Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.4   11444480   pentatricopeptide repeat-containing protein At4g20740 
 mtr-r.4   11444480   pentatricopeptide repeat-containing protein At4g20740 
 mtr-m.5   11444480   pentatricopeptide repeat-containing protein At4g20740 
 gma-u.4   102662754   pentatricopeptide repeat-containing protein At4g20740 
 gma-u.4   100788816   pentatricopeptide repeat-containing protein At4g20740 
 ppo-u.4   7460213   pentatricopeptide repeat-containing protein At4g20740 
 ath-u.4   EMB3131   Pentatricopeptide repeat (PPR-like) superfamily protein 
 sly-u.4   101245985   pentatricopeptide repeat-containing protein 
 osa-u.4   4342554   pentatricopeptide repeat-containing protein At4g20740 

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Top 50 coexpressed genes to 11444480 (mtr-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 mtr3040   Spliceosome  6 182 5.56
 mtr310   Lysine degradation  1 35 -
 mtr3008   Ribosome biogenesis in eukaryotes  1 95 -
 mtr3018   RNA degradation  1 109 -
 mtr3015   mRNA surveillance pathway  1 124 -

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mtr:LOC11444480 (pentatricopeptide repeat-containing protein At4g20740) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.4
for
11444480
mtr-r.4
for
11444480
mtr-m.5
for
11444480
gma-u.4
for
102662754
gma-u.4
for
100788816
ppo-u.4
for
7460213
ath-u.4
for
EMB3131
sly-u.4
for
101245985
osa-u.4
for
4342554
1 LOC11408816 putative F-box/LRR-repeat protein At5g41840 11408816 MTR_6g013230 6.2 7.2






2 LOC11438137 DDT domain-containing protein PTM 11438137 MTR_4g076180 5.8 5.7
5.7
4.6
 5.2
4.6
 2.3
2.1
 2.0
 2.1
 0.4
3 LOC11417491 putative F-box/LRR-repeat protein At5g41840 11417491 MTR_6g013380 5.7 6.4
 2.9





4 LOC11418819 DEAD-box ATP-dependent RNA helicase 42 11418819 MTR_2g007000 5.7 6.1
 3.1
 5.0
4.0
 4.9
3.6
 3.6
3.4
 0.1
 0.9
 1.4
0.8
5 LOC11445374 YLP motif-containing protein 1 11445374 MTR_4g107890 5.6 6.0
2.1
1.4
 1.6
1.6
 2.9
 1.6
 0.7
 1.0
6 LOC25483858 uncharacterized LOC25483858 25483858 MTR_1g060580 5.6 5.3
1.4
 1.3
 3.2
1.9
 -0.4
 1.7
 1.1
7 LOC25485216 uncharacterized LOC25485216 25485216 MTR_1g103830 5.5 5.7
4.3
4.1
 3.4
3.4
 3.6
3.5
 3.8
2.3
 2.1
1.9
 1.4
1.0
8 LOC11443624 pre-mRNA-processing protein 40C 11443624 MTR_4g074440 5.5 5.3
 3.6
 3.5
2.2
 3.1
1.9
 1.6
-0.2
 3.0
 1.2
 0.7
9 LOC25482653 pentatricopeptide repeat-containing protein At5g39710 25482653 MTR_1g033960 5.5 6.0
4.6
 4.6
 3.4
 4.9
 2.5
 -0.7
10 LOC25492469 pentatricopeptide repeat-containing protein At1g07740, mitochondrial 25492469 MTR_4g062480 5.4 6.2
0.2
 0.9
 0.7
 4.8
 2.2
11 LOC25492693 pentatricopeptide repeat-containing protein At2g15980 25492693 MTR_4g068800 5.4 5.9
3.0
 3.2
 2.2
 4.2
 1.4
 1.9
12 LOC25482449 uncharacterized protein At1g21580 25482449 MTR_1g029710 5.4 5.1
3.1
2.2
 2.1
1.2
 3.6
2.8
 0.5
 1.5
 0.5
13 LOC11433947 protein ALTERED PHOSPHATE STARVATION RESPONSE 1 11433947 MTR_5g098980 5.4 5.6
 3.0
 3.9
2.7
 2.6
2.3
 2.6
1.3
 3.6
2.6
 0.1
-0.3
 1.3
1.0
14 LOC25494206 uncharacterized LOC25494206 25494206 MTR_4g125820 5.3 5.3
3.7
3.5
 2.8
2.1
 3.1
1.1
 3.5
1.1
 0.5
 0.6
15 LOC11420562 F-box/kelch-repeat protein At3g23880 11420562 MTR_7g057270 5.3 5.6
 2.9
 2.0
1.4
 2.2
1.8



16 LOC25485827 uncharacterized LOC25485827 25485827 MTR_1g492940 5.3 5.4
3.8
2.3
 2.8
1.5
 4.1
3.0
1.7
1.5
17 LOC25493092 homeobox-DDT domain protein RLT1 25493092 MTR_4g088375 5.3 5.1
4.7
4.7
 3.8
3.7
 3.2
2.8
 1.0
-0.9
 0.9
0.8
 1.8
0.2
18 LOC11438267 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 11438267 MTR_3g029990 5.2 5.7
 2.8
 3.5
 3.9
 1.2
 4.1
 2.0
 1.1
19 LOC11441947 pentatricopeptide repeat-containing protein At5g14080 11441947 MTR_7g027940 5.2 6.0
 2.3
 2.2
 4.0
 0.2
 0.6
 1.5
 1.8
20 LOC11442044 mediator of RNA polymerase II transcription subunit 15a 11442044 MTR_2g104400 5.2 4.5
 3.9
 4.4
4.0
 3.5
3.0
 1.4
0.9
 -1.1
 1.5
 0.3
21 LOC25497511 protein RIK 25497511 MTR_7g013700 5.2 5.4
2.8
2.7
 1.9
1.5
 3.6
 -0.3
 0.9
 0.5
22 LOC25485518 serine/threonine-protein kinase prpf4B 25485518 MTR_1g111180 5.2 4.7
4.4
3.7
 4.2
3.7
 3.6
2.5
 0.3
0.2
 0.8
 0.7
0.0
23 LOC25500615 vacuolar protein sorting-associated protein 8 homolog 25500615 MTR_8g024320 5.2 5.0
2.6
2.5
 1.6
1.5
 3.4
2.2
 1.5
 1.9
 1.8
24 LOC25482189 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 25482189 MTR_1g023985 5.1 5.6
6.7
4.5
 7.3
4.7
 2.1
2.0
 2.2
 1.5
0.2
 1.7
0.6
25 LOC11410482 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 11410482 MTR_6g061840 5.1 5.1
 3.0
 2.1
1.8
 2.7
2.5
 1.0
 0.5
-0.7
 1.3
0.9
 0.2
26 LOC112416091 uncharacterized protein C57A7.06-like 112416091 5.1 5.1






27 LOC25492033 histone-lysine N-methyltransferase ATXR3 25492033 MTR_4g045743 4.9 4.4
6.1
5.6
 4.7
4.6
 2.7
2.3
 0.1
 2.0
 1.2
28 LOC25491414 protein SCAR2 25491414 MTR_4g013235 4.9 4.9
3.6
3.1
 3.5
2.6
 1.9
-0.3
 1.1
 -0.0
 0.2
29 LOC25480553 protein SMG7 25480553 MTR_0175s0030 4.8 4.7
2.5
2.4
 1.9
1.7
 1.0
0.8
 1.5
 1.5
0.7
 -0.9
30 LOC11405951 RNA-binding protein 25 11405951 MTR_5g034430 4.8 5.3
 2.4
 3.0
2.0
 2.6
1.4
 3.9
3.8
 -0.5
 0.6
 1.6
31 LOC11409414 E3 ubiquitin-protein ligase PRT6 11409414 MTR_7g061540 4.8 4.2
 3.5
 3.7
3.0
 3.3
3.2
 0.6
 -1.2
 1.2
0.6
 0.7
32 LOC11443762 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 11443762 4.8 4.8
6.7
4.5
 7.3
4.7
 2.1
2.0
 2.2
 1.5
0.2
 1.7
0.6
33 LOC11408616 probable apyrase 7 11408616 MTR_5g025280 4.8 3.7
 4.0
 3.5
3.5
 4.0
3.4
 1.7
 1.2
 0.1
 0.7
34 LOC25501438 FHA domain-containing protein At4g14490 25501438 MTR_8g069135 4.8 5.3
1.1
0.7
 1.1
0.4
 0.2
 2.4
 0.1
 1.5
35 LOC120577622 uncharacterized LOC120577622 120577622 4.8 4.5
5.5
5.2
 4.9
4.8
 4.1
3.5
 0.5
 1.7
 0.8
36 LOC11428174 uncharacterized LOC11428174 11428174 MTR_3g077620 4.8 5.3
 2.3
 3.0
2.8
 3.2
3.1
 1.6
0.5
 -0.2
 1.3
 0.9
37 LOC25489957 activating signal cointegrator 1 complex subunit 2 25489957 MTR_3g103040 4.7 4.7
2.0
1.3
 1.9
1.7
 2.3
 0.6
 0.6
 -0.9
38 LOC25495189 methyl-CpG-binding domain-containing protein 9 25495189 MTR_6g007650 4.7 4.1
4.7
4.6
 4.0
3.9
 1.1
 2.1
 1.2
 0.5
39 LOC25482423 transcriptional corepressor SEUSS 25482423 MTR_1g029400 4.7 4.6
3.8
2.6
 3.2
2.6
 2.2
1.9
 1.9
 1.4
1.3
 2.1
1.6
40 LOC11429104 lysine-specific demethylase 5B 11429104 MTR_5g010300 4.7 3.4
 4.1
 3.2
2.7
 3.0
2.2
 2.2
 0.3
 1.3
 0.5
41 LOC11419986 SAC3 family protein A 11419986 MTR_3g073080 4.7 4.1
 3.4
 1.5
1.2
 0.5
0.3
 3.2
2.7
 -0.3
 1.5
 1.9
0.0
42 LOC11416201 cyclin-T1-3 11416201 MTR_1g104820 4.7 6.0
 1.6
 2.4
1.4
 1.9
1.1
 2.6
1.5
1.5
43 LOC11416384 lysine-specific histone demethylase 1 homolog 3 11416384 MTR_1g023510 4.7 4.4
 3.2
 5.2
5.2
 4.9
3.8
 3.1
2.5
 3.1
 2.8
 2.0
44 LOC11434056 protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 11434056 MTR_8g021980 4.6 3.0
 4.4
 4.1
3.1
 3.2
2.7
 3.2
1.8
 -0.0
 0.2
 1.5
45 LOC25490520 putative protein FAR1-RELATED SEQUENCE 10 25490520 MTR_3g448640 4.6 5.2
-1.8
 -1.9

-0.1
 1.4
1.3
46 LOC11444866 enhancer of mRNA-decapping protein 4 11444866 MTR_3g061160 4.6 4.1
 3.3
 4.3
4.3
 3.6
3.3
 2.6
2.0
 1.2
-0.4
 1.6
1.5
 1.8
0.9
47 LOC11411068 enhancer of mRNA-decapping protein 4 11411068 MTR_2g027690 4.6 4.0
 3.4
 4.3
4.3
 3.6
3.3
 2.6
2.0
 1.2
-0.4
 1.6
1.5
 1.8
0.9
48 LOC25487444 uncharacterized LOC25487444 25487444 MTR_2g084285 4.6 4.6
2.6
2.1
 2.8
2.1
 3.0
1.3
 0.4
49 LOC25484765 metal tolerance protein 2 25484765 MTR_1g088870 4.6 4.6
0.5
-0.8
 -0.5
-0.5
 2.1
 -0.9
 -0.2
 0.7
50 LOC120578139 uncharacterized LOC120578139 120578139 4.6 4.3
3.6
1.7
 3.9
2.2
 2.5
 1.7
 2.1
 1.0
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