Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4325531   phosphoenolpyruvate carboxylase 1 
 osa-r.5   4325531   phosphoenolpyruvate carboxylase 1 
 osa-m.8   4325531   phosphoenolpyruvate carboxylase 1 
 osa-u.4   4325309   phosphoenolpyruvate carboxylase, housekeeping isozyme 
 osa-u.4   4345387   phosphoenolpyruvate carboxylase 2 
 osa-u.4   4346699   phosphoenolpyruvate carboxylase 2 
 ath-u.4   PPC2   phosphoenolpyruvate carboxylase 2 
 ath-u.4   PPC3   phosphoenolpyruvate carboxylase 3 
 ath-u.4   PPC1   phosphoenolpyruvate carboxylase 1 
 gma-u.4   PPC1   phosphoenolpyruvate carboxylase 
 gma-u.4   100807407   phosphoenolpyruvate carboxylase 2 
 gma-u.4   100820574   phosphoenolpyruvate carboxylase, housekeeping isozyme-like 
 sly-u.4   PEPC4   phosphoenolpyruvate carboxylase 
 sly-u.4   ppc2   phosphoenolpyruvate carboxylase 2 
 sly-u.4   PEPC2   phosphoenolpyruvate carboxylase 
 ppo-u.4   18095497   phosphoenolpyruvate carboxylase, housekeeping isozyme 
 ppo-u.4   7472353   phosphoenolpyruvate carboxylase 
 ppo-u.4   7458241   phosphoenolpyruvate carboxylase 2 
 mtr-u.4   25502534   phosphoenolpyruvate carboxylase, housekeeping isozyme 
 mtr-u.4   11409065   phosphoenolpyruvate carboxylase 
 mtr-u.4   11407264   phosphoenolpyruvate carboxylase 

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Top 50 coexpressed genes to 4325531 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1200   Carbon metabolism  8 256 7.23
 osa630   Glyoxylate and dicarboxylate metabolism  6 72 8.05
 osa710   Carbon fixation in photosynthetic organisms  5 71 6.40
 osa1230   Biosynthesis of amino acids  5 220 4.01
 osa260   Glycine, serine and threonine metabolism  3 64 3.48

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osa:LOC4325531 (phosphoenolpyruvate carboxylase 1) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4325531
osa-r.5
for
4325531
osa-m.8
for
4325531
osa-u.4
for
4325309
osa-u.4
for
4345387
osa-u.4
for
4346699
ath-u.4
for
PPC2
ath-u.4
for
PPC3
ath-u.4
for
PPC1
gma-u.4
for
PPC1
gma-u.4
for
100807407
gma-u.4
for
100820574
sly-u.4
for
PEPC4
sly-u.4
for
ppc2
sly-u.4
for
PEPC2
ppo-u.4
for
18095497
ppo-u.4
for
7472353
ppo-u.4
for
7458241
mtr-u.4
for
25502534
mtr-u.4
for
11409065
mtr-u.4
for
11407264
1 LOC4326583 carbonic anhydrase, chloroplastic 4326583 Os01g0639900 5.9 6.8
 4.9
 -1.2
 0.6
 0.8
 0.6
0.3
 2.6
0.9
 -0.2
-0.4
 0.7
-0.2
 0.5
0.4
 2.8
1.5
 0.2
0.1
 0.9
-0.1
 1.3
0.9
 -0.5
-0.5
 0.7
0.5
 2.2
1.0
 -0.3
-0.4
 0.1
-0.3
 2.0
1.1
2 LOC4340025 transketolase, chloroplastic 4340025 Os06g0133800 5.7 5.9
 5.6
 0.3
0.1
 2.8
0.4
 2.9
2.6
 4.7
-0.4
 2.4
2.4
 3.7
2.4
 2.0
0.3
 3.1
2.4
 2.8
1.1
 2.6
0.4
 1.3
0.2
 1.7
1.4
 1.1
-0.4
 -0.8
-1.4
 3.5
1.6
 2.5
1.7
 2.2
0.9
 2.9
0.9
3 LOC4326014 ferredoxin--nitrite reductase, chloroplastic-like 4326014 OSNPB_010357100 5.4 6.0
 4.9
 -0.4
-1.0
 1.0
0.7
 0.3
0.2
 4.3
 2.5
 -0.4
 -0.6
-0.8
 0.4
-0.5
 1.1
0.6
 1.4
0.3
 -0.5
-0.8
 5.1
3.6
 0.3
 -0.4
 -0.3
 0.6
 -1.3
 0.7
4 LOC4342543 probable ribose-5-phosphate isomerase 3, chloroplastic 4342543 Os07g0176900 5.2 4.8
 5.7
 -0.1
 1.7
 1.2
 1.0
 0.3
 0.9
 0.5
-0.0
 0.8
0.8
 1.3
1.0
 1.4
 -0.1
 2.1
 -0.0
-0.4
 -0.8
-2.2
 2.5
1.5
 2.5
 -0.1
 -1.1
5 LOC4334274 malate dehydrogenase, glyoxysomal-like 4334274 Os03g0773800 5.0 6.2
 3.7
 0.2
-0.2
 0.9
0.3
 1.0
0.8
 1.3
-0.7
 1.2
0.9
 4.0
0.3
 0.3
-0.3
 0.9
0.1
 0.5
0.3
 0.3
-0.4
 1.5
1.0
 1.1
-0.4
 0.8
-0.9
 0.2
-0.4
 1.3
-0.1
 0.6
0.6
 1.7
-0.5
 2.2
-0.0
6 LOC4344164 ferredoxin-dependent glutamate synthase, chloroplastic-like 4344164 OSNPB_070658400 4.7 5.3
 4.1
 1.1
 4.0
 1.2
 3.8
2.0
 4.3
2.2
 6.2
0.5
 1.5
1.3
 2.7
2.5
 1.6
1.4
 1.8
 0.2
 2.9
 -0.5
-1.3
 0.9
-0.7
 1.8
-0.1
 2.4
 0.5
 -0.1
7 LOC4342714 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 4342714 Os07g0212200 4.5 2.1
 6.8
 -0.4
 0.2
 0.3
 2.0
 1.6
 -0.3
 -0.4
-0.9
 0.7
-0.9
 0.3
0.1
 0.6
 2.2
 1.9
 -0.3
-1.7
 0.2
-1.5
 0.4
-0.8
 0.3
 0.0
 0.5
8 LOC4342210 glutamate--glyoxylate aminotransferase 2 4342210 Os07g0108300 4.3 5.3
 3.2
 1.0
 2.9
 0.5
 4.0
4.0
 1.6
0.4
 1.2
0.7
 1.1
0.3
 1.7
1.0
 0.0
-0.7
 0.8
-0.5
 1.6
-0.5
 3.5
0.3
 -0.5
-1.2
 0.6
-1.7
 1.1
-0.1
 0.9
 0.5
 2.0
9 LOC4324401 D-glycerate 3-kinase, chloroplastic 4324401 Os01g0682500 4.2 4.9
 3.5
 -0.5
 -0.4
 -0.5
 0.6
 0.7
 -1.7
 1.5
0.6
 0.0
-0.3
 -0.5
-0.6
 0.9
 -0.1
 1.9
 0.3
-0.4
 -0.2
-1.4
 0.9
-0.8
 1.4
 -0.4
 -0.6
10 LOC4337051 aminomethyltransferase, mitochondrial 4337051 Os04g0623800 4.2 4.3
 4.1
 0.1
 2.0
 1.2
 2.2
 1.1
 0.6
 4.2
3.8
 1.1
1.0
 -0.4
-0.6
 1.8
 0.0
 0.5
 -0.5
-1.2
 -1.3
-1.4
 2.9
0.8
 2.0
 -0.1
 -0.2
11 LOC4328586 peroxiredoxin-2E-2, chloroplastic-like 4328586 OSNPB_020192700 4.0 2.5
 5.5
 -0.1
-0.2
 -0.2
-0.7
 1.3
0.1
 1.3
 1.3
 0.2
 1.2
 1.0
 1.3
 0.3
 -0.1
 -0.2
 0.7
 -0.3
 0.4
 1.0
 1.5
 0.3
12 LOC4336185 uncharacterized LOC4336185 4336185 Os04g0481300 3.9 2.5
 5.4
 -1.2
 -1.2
 -0.7
 -0.1
 -0.2
 -0.3
 0.2
 0.5
 -0.4
 0.8
 0.5
 0.6
 0.4
 1.0
 0.4
 0.2
 -1.6
 -1.0
13 LOC4337829 bifunctional protein FolD 2 4337829 Os05g0150800 3.9 5.5
 2.3
 -0.0
 2.4
 0.7
 0.1
 -0.5
 2.8
 0.9
0.8
 1.2
-0.4
 -0.3
-1.4
 2.1
 0.8
 -0.5
 0.4
0.3
 0.3
-0.0
 0.2
0.0
 0.9
 1.6
 0.1
14 LOC4349082 probable plastid-lipid-associated protein 10, chloroplastic 4349082 Os10g0509200 3.9 4.2
 3.5
 -0.6
 0.1
 -0.7
 0.3
 0.8
 -1.1
 0.8
 -1.4
 -0.5
 -0.5
 -1.4
 1.6
 -0.2
 -0.8
 1.4
 0.8
 -1.4
 -1.2
15 LOC4324366 uncharacterized LOC4324366 4324366 Os01g0919600 3.8 4.2
 3.4
 -1.2
 1.3
 0.2
 0.9
-0.5
 -0.3
-0.6
 1.3
-1.0
 0.6
0.4
 -0.0
-0.3
 1.9
0.7
 0.8
-0.1
 -0.8
-2.3
 0.2
-0.7
 0.1
0.0
 0.7
-0.5
 1.4
0.5
 0.1
-1.9
 0.6
-1.2
 0.7
-0.2
16 LOC4330752 ethylene-responsive transcription factor RAP2-4 4330752 Os02g0752800 3.8 4.4
 3.1
 -0.4
-0.7
 0.4
0.4
 0.3
-0.1
 2.1
1.0
 0.6
0.5
 0.6
0.4
 1.3
1.0
 1.2
1.1
 0.0
-0.0
 -0.1
-0.2
 -0.2
-1.1
 -0.1
-0.2
 1.0
0.4
 0.7
0.7
 1.1
0.6
 0.3
-0.8
 0.3
-0.8
 0.5
0.1
17 LOC4339871 uncharacterized membrane protein YjcL 4339871 Os06g0107100 3.7 2.1
 5.4
 -0.7
 0.2
 -0.4
 1.2
-0.7
 0.7
-0.5
 2.3
-1.1


1.0
0.4
 -1.0
-1.1
 -0.3
-0.7
 1.0
0.5
 0.1
-0.3
 1.5
1.2
 1.0
 0.7
 -0.1
18 LOC4344370 uncharacterized LOC4344370 4344370 Os07g0691200 3.7 5.5
 2.0
 1.0
 2.4
 1.1
 0.1
 -0.7
 -0.4
 2.1
1.2
 2.1
1.2
 1.0
0.6
 -0.2
 2.2
 -0.1
 0.3
 1.5
 -1.8
 0.1
 1.1
 3.1
19 LOC4334283 putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_0910 4334283 Os03g0775000 3.7 3.9
 3.5
 0.3
 0.6
 -0.4
 1.1
 0.3
 -0.4
 -0.2
-0.7
 1.5
1.2
 0.2
0.2


-1.0
 -0.3
 1.9
 0.7
 -0.5
 0.2
20 LOC4352397 myosin heavy chain, striated muscle 4352397 Os12g0529900 3.6 4.0
 3.3
 0.6
-0.1
 1.3
1.1
 0.7
0.6














21 LOC4349795 purple acid phosphatase 22 4349795 Os11g0151700 3.6 3.3
 4.0
 1.0
0.2
 0.3
0.1
 1.4
0.1
 0.7
0.0
 0.3
0.3
 0.6
-0.1
 0.6
0.3
 3.2
1.8
 1.6
1.1
 1.2
 -0.3
 -0.0
 1.3
 1.5
 -0.4
 0.5
0.4
 2.0
1.3
 0.7
0.4
22 LOC9268894 peroxisomal membrane protein PEX14 9268894 Os01g0107000 3.6 4.0
 3.2
 -0.0
-1.4
 1.9
0.2
 0.6
0.3
 2.4
 -0.6
 -0.3
 1.9
0.2
 1.9
-0.4
 0.8
-0.2
 -0.7
-1.7
 0.5
-0.4
 2.2
-0.7
 1.5
0.4
 -0.4
-0.8
 0.5
0.2
 1.8
 1.2
 -0.5
23 LOC4346004 uncharacterized LOC4346004 4346004 Os08g0510800 3.5 2.8
 4.3
 0.9
-0.3
 1.5
0.8
 0.9
0.4
 1.2
 -1.2
 -0.5
 -0.2
-0.8
 -0.1
-0.1
 0.5
0.3
 -1.1
 0.0
 -0.4
 1.4
1.3
 -0.6
-0.7
 1.3
1.0
 -0.6
 0.4
 -1.0
24 LOC4331718 UPF0481 protein At3g47200 4331718 Os03g0163200 3.5 3.1
 3.9

















25 LOC4352791 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like 4352791 OSNPB_120615400 3.5 3.6
 3.4

















26 LOC4328147 3-isopropylmalate dehydratase large subunit, chloroplastic 4328147 Os02g0125100 3.5 3.9
 3.1
 -0.3
 2.7
 0.6
 2.2
 1.0
 1.7
 0.2
-0.8
 0.6
0.0
 1.3
0.5
 0.4
0.2
 1.4
-1.5
 1.1
-1.4
 0.4
 0.4
 0.1
 1.8
-1.8
 0.9
-0.3
 0.2
-1.9
27 LOC4346276 protein indeterminate-domain 6, chloroplastic 4346276 Os08g0554400 3.5 1.5
 5.4
 -0.0
-0.1
 1.1
0.4
 -0.9
-1.1
 1.4
0.0
 0.5
-0.9
 0.3
-0.9
 1.7
0.9
 0.5
0.1
 1.5
1.0


0.7
-0.1
 0.1
-0.0
 2.6
0.7
 2.2
1.7
 -0.2
-0.4
 0.5
0.2
28 LOC4345218 putative chloride channel-like protein CLC-g 4345218 Os08g0300300 3.5 4.0
 2.9
 -0.2
-0.6
 1.1
-0.5
 0.7
-1.2
 2.4
 -0.1
 1.0
 -0.4
 2.2
 0.8
 -0.1
 -0.3
 1.6
 0.1
-0.2
 0.9
0.2
 0.8
0.2
 0.3
 1.0
 0.3
29 LOC4324354 zinc finger CCCH domain-containing protein 12-like 4324354 OSNPB_010917400 3.5 5.1
 1.8
 1.1
0.5
 1.9
1.5
 1.0
0.2
 1.8
-0.5
 0.2
-0.1
 0.8
-1.3
 1.4
1.1
 0.1
0.1
 -0.6
-0.6
 0.1
 -0.5
 3.0
 0.7
-0.2
 -0.0
-0.7
 1.3
1.0
 1.7
 0.0
 1.9
30 LOC9266341 protein SUPPRESSOR OF QUENCHING 1, chloroplastic 9266341 Os03g0311300 3.4 3.9
 2.9
 -0.5
 0.4
 1.5
 4.4
 0.7
 1.3
 -0.4
 -1.0
 -1.4
 -0.2
 -0.4
 1.9
 -0.9
 -1.3
 -0.1
 1.4
 -1.0
 -0.7
31 LOC4334291 proline-rich receptor-like protein kinase PERK4 4334291 Os03g0776100 3.4 3.2
 3.7
 0.5
0.4
 0.8
0.5
 0.8
 2.3
2.0
 1.2
0.8
 0.3
0.3
 1.4
1.1
 1.7
1.5
 0.4
0.3
 2.5
1.9
 1.9
1.6
 2.0
1.6
 1.1
0.8
 1.3
1.0
 0.9
0.7
 1.5
1.5
 0.5
0.2
 0.6
0.4
32 LOC4334349 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like 4334349 Os03g0786000 3.4 5.6
 1.2
 0.6
0.4
 1.9
-0.6
 0.8
-0.1
 2.1
2.0
 1.9
1.3
 0.9
0.1
 2.6
1.2
 2.7
1.0
 0.3
0.3
 1.6
1.2
 1.0
0.2
 0.9
0.8
 1.5
-0.5
 1.4
0.8
 0.9
0.6
 0.9
0.8
 1.6
0.8
 0.6
0.4
33 LOC4324032 plastidal glycolate/glycerate translocator 1, chloroplastic 4324032 Os01g0511600 3.4 3.2
 3.7
 0.7
-0.3
 0.9
0.8
 -0.4
-0.9
 1.2
 1.5
 0.1
 1.1
-0.9
 1.5
-0.6
 0.6
-0.4
 -0.5
 -1.3
 1.4
 -0.3
 -0.3
 0.8
 1.4
 0.3
 -0.8
34 LOC4352930 uncharacterized LOC4352930 4352930 Os12g0641300 3.4 3.4
 3.3
 -0.4
 0.7
 0.8
 3.7
 0.9
 -0.4
 -0.1
 0.2
 -1.2
 -2.1
 -0.7
 -0.7
 -0.5
 -0.3
 -0.5
 0.7
 -0.8
 -1.1
35 LOC4346508 ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like 4346508 OSNPB_090249900 3.4 3.6
 3.2
 -0.1
 2.2
 0.1
 2.0
 -0.2
 0.7
 -0.5
-0.8
 -0.8
-1.2
 -0.9
-1.0
 -0.6
 -0.0
 2.2
 -2.2
 -2.0
 0.0
 0.5
 -0.5
 -1.6
36 LOC4351682 histone deacetylase 14 4351682 Os12g0182700 3.4 3.4
 3.3
 -0.3
 0.5
 0.6
 1.7
 0.4
 0.1
 0.7
 0.5
 -2.2
 -1.6
 0.4
 0.8
 -0.4
 -2.2
 0.6
 1.5
 -2.1
 -0.7
37 LOC4337441 K(+) efflux antiporter 2, chloroplastic 4337441 Os04g0682800 3.3 3.8
 2.9
 1.2
 3.0
 1.7
 4.3
3.4
 1.5
0.7
 3.0
1.1
 2.1
1.4
 3.0
2.4
 3.3
2.9
 1.2
 -0.2
 3.0
 2.1
1.7
 0.9
-0.5
 1.1
1.1
 1.7
1.4
 0.2
-0.7
 1.7
0.2
38 LOC4334728 tol-Pal system protein TolB 4334728 Os03g0840200 3.3 3.0
 3.6
 0.1
 1.1
 1.3
 0.4
0.3
 1.2
0.3
 1.1
0.7
 -0.5
 1.0
 -0.3
 -1.1
 -0.0
 1.4
 -0.2
 -0.6
 1.1
 2.3
 1.3
 -0.1
39 LOC4338815 pheophytinase, chloroplastic 4338815 Os05g0419000 3.3 3.9
 2.7
 -0.4
 0.8
 -0.2
 0.7
 0.4
 -0.0
 -1.1
 2.3
 0.1
 -0.7
 -0.9
 2.6
 0.4
 -0.3
 1.8
 0.4
 -0.7
 -0.8
40 LOC4326358 D-amino-acid transaminase, chloroplastic 4326358 Os01g0238500 3.3 2.8
 3.8
 -0.3
-0.7
 2.4
-0.7
 1.5
-1.4


3.7
 3.8
 1.5
 0.7
 -0.5
 -0.4
 0.3
 1.2
 -0.9
 -0.3
 -0.8
 -0.3
41 LOC4339713 zinc-finger homeodomain protein 6 4339713 OSNPB_050579300 3.3 2.6
 4.0
 0.8
0.5
 1.3
0.4
 0.6
-0.1
 0.3
-0.7
 0.4
0.0
 -0.3
-0.4
 0.7
0.3
 0.8
0.5
 4.0
1.0
 0.2
-0.2
 -0.3
-0.4
 2.2
1.8
 0.5
0.4
 0.7
0.5
 2.3
2.1
 0.9
0.8
 1.1
0.8
 0.6
-0.4
42 LOC4329941 outer envelope pore protein 37, chloroplastic 4329941 Os02g0608900 3.3 3.0
 3.5
 -0.1
-0.5
 0.6
-0.7
 0.5
0.2
 0.3
 -1.2
 1.1
 -0.5
 1.0
 0.6
 0.3
 -0.5
 0.1
 1.4
1.2
 -1.4
-2.5
 0.7
-1.0
 1.5
 0.1
 -0.2
43 LOC4342680 zeta-carotene desaturase, chloroplastic/chromoplastic 4342680 Os07g0204900 3.3 2.8
 3.8
 -0.5
 1.4
 0.7
 2.9
 0.8
 1.2
 -0.0
-0.1
 1.3
1.1
 2.1
1.0
 0.8
 -1.3
 2.4
 1.4
0.1
 1.6
-1.4
 1.1
1.1
 0.4
 -0.3
 -0.4
44 LOC4346878 homeobox protein Hox-D9 4346878 Os09g0367900 3.3 3.2
 3.3
 0.7
-0.2
 1.5
1.4
 0.6
0.5
 1.2
1.0
 1.0
0.2
 0.7
0.6
 0.3
0.2
 1.9
0.8
 -0.6
-1.1
 0.4
-0.1
 0.6
0.3
 1.1
0.5
 0.5
0.2
 0.3
0.1
 1.3
0.9
 -1.4
-1.9
 -0.3
-0.5
 0.1
-0.4
45 LOC4338057 thioredoxin-like 2, chloroplastic 4338057 OSNPB_050200100 3.2 2.3
 4.2
 -0.9
 0.7
 -0.5
 1.2
0.4
 -0.5
-0.9
 0.1
-1.1
 0.0
-1.5
 0.1
-0.3
 -0.5
-0.8
 -0.0
-1.2
 -0.4
-1.0
 2.0
-0.4
 0.5
-0.6
 -0.1
-1.4
 1.0
0.2
 0.2
 -1.0
 -1.8
46 LOC4343366 ATP synthase subunit gamma, chloroplastic 4343366 Os07g0513000 3.2 3.8
 2.7
 -0.8
 1.3
 0.7
 2.7
 0.3
 1.6
 -0.2
-0.3
 1.7
1.1
 0.1
-0.1
 -0.2
 -0.7
 1.1
 0.4
-0.6
 1.2
-0.9
 -0.2
-1.0
 1.8
 -1.0
 -0.3
47 LOC4332759 pentatricopeptide repeat-containing protein At5g41170, mitochondrial 4332759 Os03g0336000 3.2 2.7
 3.7
 -1.3
 -0.3
 -0.7


-0.3
 -0.7
 -0.6
 -1.8
 -0.8
 -0.9
 -0.6
 -1.6
 0.3
 1.7
 -0.5
 -1.1
48 LOC4332431 ATP synthase subunit b', chloroplastic 4332431 Os03g0278900 3.2 3.3
 3.1
 -0.7
 0.1
 -0.0
 2.2
 -0.2
 -0.7
 -0.8
 -0.8
 1.4
 0.1
-0.3
 -0.5
-0.9
 2.5
1.9
 -0.1
-0.2
 -0.9
-1.1
 0.6
-0.1
 1.3
 -0.2
 -0.8
49 LOC4339204 phosphoglycerate kinase, chloroplastic 4339204 Os05g0496200 3.2 3.8
 2.6
 0.5
-0.1
 2.2
2.0
 3.9
2.9
 2.8
2.0
 2.6
1.6
 7.4
1.6
 2.0
0.9
 3.1
2.0
 1.7
1.0
 1.1
0.8
 1.4
-0.9
 1.0
-0.1
 2.9
2.2
 1.5
0.8
 1.7
-0.3
 1.5
0.2
 3.1
2.1
 7.6
3.8
50 LOC4328186 uncharacterized LOC4328186 4328186 Os02g0129900 3.2 2.3
 4.1
 -0.7
 0.7
 -0.9
 1.8
 0.2
 -2.0
 -1.4
 0.3
 0.1
 0.1
 -1.1
 1.9
 -0.6
 0.8
 1.2
 0.5
 -0.6
 0.5
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