Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4333613   3-isopropylmalate dehydrogenase 2, chloroplastic 
 osa-r.5   4333613   3-isopropylmalate dehydrogenase 2, chloroplastic 
 osa-m.8   4333613   3-isopropylmalate dehydrogenase 2, chloroplastic 
 ath-u.4   IMD1   isopropylmalate dehydrogenase 1 
 ath-u.4   IMD3   isopropylmalate dehydrogenase 3 
 ath-u.4   IMD2   isopropylmalate dehydrogenase 2 
 gma-u.4   100810468   3-isopropylmalate dehydrogenase 2, chloroplastic 
 gma-u.4   100793433   3-isopropylmalate dehydrogenase, chloroplastic-like 
 gma-u.4   100807689   3-isopropylmalate dehydrogenase 2, chloroplastic 
 sly-u.4   101247914   3-isopropylmalate dehydrogenase, chloroplastic 
 ppo-u.4   7470567   3-isopropylmalate dehydrogenase, chloroplastic 
 mtr-u.4   11433087   3-isopropylmalate dehydrogenase, chloroplastic 

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Top 50 coexpressed genes to 4333613 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1230   Biosynthesis of amino acids  12 219 13.60
 osa300   Lysine biosynthesis  5 13 10.37
 osa220   Arginine biosynthesis  3 34 4.30
 osa250   Alanine, aspartate and glutamate metabolism  3 50 3.79
 osa970   Aminoacyl-tRNA biosynthesis  3 70 3.36

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osa:LOC4333613 (3-isopropylmalate dehydrogenase 2, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4333613
osa-r.5
for
4333613
osa-m.8
for
4333613
ath-u.4
for
IMD1
ath-u.4
for
IMD3
ath-u.4
for
IMD2
gma-u.4
for
100810468
gma-u.4
for
100793433
gma-u.4
for
100807689
sly-u.4
for
101247914
ppo-u.4
for
7470567
mtr-u.4
for
11433087
1 LOC4329234 probable diaminopimelate decarboxylase, chloroplastic 4329234 OSNPB_020440000 10.9 8.4
 13.4
 1.5
0.9
 8.4
6.4
 4.4
3.7
 3.0
1.6
 2.9
1.3
 3.2
2.3
 5.6
 4.9
4.3
 5.9
2 LOC4345328 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic 4345328 Os08g0342400 8.1 6.4
 9.7
 8.3
1.5
 7.0
5.6
 3.9
1.8
 4.8
3.1
 4.1
4.0
 6.3
3.8
 4.7
0.4
 3.0
0.3
 1.8
1.3
3 LOC4329224 probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic 4329224 OSNPB_020436400 7.8 5.9
 9.7
 1.0
0.6
 5.3
3.1
 4.5
3.3
 4.0
1.6
 4.0
3.4
 4.2
4.1
 3.0
 1.6
 3.3
4 LOC4332563 probable LL-diaminopimelate aminotransferase, chloroplastic 4332563 OSNPB_030299900 7.7 6.4
 8.9
 1.4
-0.1
 7.1
-0.1
 3.3
-0.7
 3.7
3.0
 3.3
3.0
 4.2
2.9
 12.0
0.1
 4.5
0.1
 6.5
-0.6
5 LOC4332596 argininosuccinate lyase, chloroplastic 4332596 Os03g0305500 6.3 5.8
 6.9
 1.7
 6.3
 3.7
 3.2
2.0
 4.2
2.8
 3.8
3.5
 1.5
 1.3
 1.9
6 LOC4337316 cell division protein FtsZ homolog 1, chloroplastic 4337316 Os04g0665400 6.3 5.2
 7.4
 1.3
 4.4
 1.3
 3.6
3.0
 3.1
2.6
 3.1
2.9
 2.7
0.6
 4.9
 2.7
1.4
7 LOC4327826 WD-40 repeat-containing protein MSI4 4327826 Os01g0710000 6.1 6.0
 6.2
 0.9
0.8
 1.7
1.6
 1.6
1.1
 1.0
0.3
 2.4
0.4
 2.0
-0.3
 1.9
-0.5
 2.3
1.4
 1.5
1.3
8 LOC4340044 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 4340044 Os06g0136800 6.1 6.6
 5.6
 0.3
 2.9
 2.3
 3.1
3.0
 3.6
3.0
 2.6
2.4
 6.6
 2.8
 1.5
9 LOC4342241 eukaryotic translation initiation factor 5A-4 4342241 Os07g0112800 5.6 6.3
 4.9
 1.0
0.6
 2.5
0.3
 1.1
-0.4
 3.2
1.8
 1.7
1.6
 2.4
0.8
 1.1
1.0
 2.8
1.1
 3.5
1.1
10 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 5.6 5.1
 6.1
 0.5
 3.0
 0.8
 4.1
3.5
 3.6
3.4
 2.8
2.4
 5.9
 6.9
 1.7
11 LOC4335309 UPF0307 protein ECA0281 4335309 Os04g0251262 5.5 5.5
 5.4
 0.4
 2.6
 1.7
 0.9
 2.7
 1.9
 3.9
 3.2
 2.4
12 LOC4333537 DNA repair protein recA homolog 1, chloroplastic 4333537 Os03g0639700 5.4 4.5
 6.3
 0.7
 1.9
 -0.2
 1.8
 2.7
 2.1
 1.2
 1.7
 1.4
13 LOC4336329 2,3-dimethylmalate lyase 4336329 Os04g0504600 5.4 5.4
 5.3
 0.5
 3.1
 1.0
 3.3
1.9
 2.5
0.9
 3.3
-0.1
 4.6
 0.5
 1.2
14 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 5.3 5.4
 5.1
 0.5
-0.1
 1.1
0.6
 1.3
-0.7
 2.9
1.9
 3.9
3.1
 1.7
1.1
 3.6
2.0
 3.3
1.2
 1.6
15 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 5.2 5.8
 4.6
 0.1
 2.1
 0.4
 1.9
1.0
 0.9
0.4
 0.7
0.0
 5.2
 1.6
 1.6
16 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 5.2 6.1
 4.3
 0.5
 3.7
 2.8
 2.6
1.3
 4.1
2.8
 3.0
1.4
 7.7
 5.1
-0.1
 -0.3
17 LOC4330474 carbamoyl-phosphate synthase small chain, chloroplastic-like 4330474 OSNPB_020708100 5.2 6.0
 4.4
 0.6
 6.9
 5.0
 5.4
4.0
 4.2
4.0
 3.2
2.7
 2.3
 3.1
2.8
 2.9
2.0
18 LOC4352558 diaminopimelate epimerase, chloroplastic-like 4352558 5.2 3.5
 6.8
 0.7
 5.3
 5.3
 6.4
5.1
 2.3
1.7
 1.6
0.4
 7.3
 1.7
1.3
 2.0
19 LOC4346596 enoyl-[acyl-carrier-protein] reductase [NADH] 2, chloroplastic-like 4346596 OSNPB_090277800 5.1 5.1
 5.2
 0.1
 2.9
 3.9
 3.4
2.0
 3.8
3.3
 3.5
2.7
 4.0
3.6
 3.7
2.3
 3.2
1.9
20 LOC4341354 elongation factor 1-gamma 3-like 4341354 OSNPB_060571400 5.1 4.5
 5.8
 -0.2
-0.5
 2.0
0.9
 3.3
1.9
 5.5
4.9
 5.9
5.3
 4.5
4.3
 0.7
-0.1
 2.2
2.1
 3.3
3.0
21 LOC4351381 bifunctional aspartokinase/homoserine dehydrogenase 1 4351381 Os12g0125400 5.1 4.1
 6.1
 1.0
 3.4
 2.8
 2.0
 2.4
 3.6
 1.6
 2.2
 3.1
22 LOC4330495 uncharacterized protein At1g26090, chloroplastic 4330495 Os02g0711200 5.1 4.7
 5.5
 0.5
 1.9
 2.4
 1.8
 2.6
 1.3
 3.4
 1.9
 1.6
23 LOC4347161 20 kDa chaperonin, chloroplastic 4347161 Os09g0438700 5.1 6.0
 4.1
 0.7
 4.0
 3.3
 4.4
4.3
 3.1
2.9
 3.2
2.5
 5.5
4.2
 3.4
2.8
 3.8
2.4
24 LOC4344571 uncharacterized LOC4344571 4344571 Os08g0127600 5.1 6.3
 3.8
 0.8
 3.6
 2.0
 3.5
3.0
 4.0
3.9
 2.9
2.8
 5.4
 3.0
0.8
 -0.2
25 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 5.1 4.6
 5.5
 0.3
 1.7
 1.6
 2.7
2.1
 5.4
2.4
 3.6
2.2
 1.4
 3.4
 1.7
26 LOC4352058 serine hydroxymethyltransferase 4 4352058 Os12g0409000 5.0 3.5
 6.5
 1.4
0.4
 1.7
0.8
 -0.1
-1.1
 0.7
0.0
 0.5
0.0
 0.6
0.1
 1.2
1.0
 0.5
-0.2
 1.2
0.8
27 LOC4328615 outer envelope protein 80, chloroplastic-like 4328615 OSNPB_020196300 5.0 4.7
 5.3
 0.4
 3.6
 2.1
 3.4
2.8
 3.6
3.6
 3.7
2.6
 3.0
2.8
 3.6
0.4
 0.9
28 LOC4346941 DEAD-box ATP-dependent RNA helicase 22-like 4346941 OSNPB_090383400 4.9 3.6
 6.3
 1.6
 5.1
 1.2
 2.8
 3.2
 1.3
 1.1
 2.9
 1.4
29 LOC4339585 phenylalanine--tRNA ligase beta subunit, cytoplasmic 4339585 Os05g0558900 4.9 4.0
 5.7
 0.2
 2.6
 2.2
 3.1
1.5
 3.0
1.5
 4.4
3.7
 -0.6
 3.8
1.4
 3.6
1.5
30 LOC4324282 histidinol dehydrogenase, chloroplastic-like 4324282 OSNPB_010232700 4.8 5.4
 4.2
 1.1
 5.6
 5.0
 3.3
1.4
 3.4
0.8
 3.8
2.3
 5.8
 3.3
0.5
 2.6
31 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 4.8 2.9
 6.8
 0.6
 3.0
 2.4
 2.4
 3.5
 3.6
 3.6
 3.1
 2.4
32 LOC9269231 ornithine carbamoyltransferase, chloroplastic 9269231 Os02g0704800 4.8 4.6
 5.0
 0.7
 4.4
 4.5
 3.7
3.2
 2.4
2.2
 5.1
3.8
 4.5
2.9
 4.3
 2.2
-0.2
33 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 4.8 4.7
 4.9
 0.2
 2.1
 2.0
 2.8
1.5
 4.6
3.3
 5.4
2.8
 5.2
 3.3
-0.9
 3.2
34 LOC4332547 malonyl CoA-acyl carrier protein transacylase 4332547 Os03g0297400 4.8 4.3
 5.2
 0.8
 5.4
 5.4
 4.4
2.0
 3.6
1.5
 4.5
1.4
 5.8
 5.4
 4.6
35 LOC4336463 uncharacterized LOC4336463 4336463 Os04g0527800 4.8 4.2
 5.3
 -0.1
 2.1
 3.8
 4.6
4.1
 5.9
4.6
 5.8
3.0
 5.3
 4.0
 2.5
36 LOC4339677 ketol-acid reductoisomerase, chloroplastic-like 4339677 OSNPB_050573700 4.7 4.3
 5.0
 1.3
 7.1
 6.1
 5.3
3.8
 4.4
2.4
 2.7
2.1
 2.4
1.3
 1.5
0.7
 2.6
37 LOC4331292 phosphatidylserine decarboxylase proenzyme 1, mitochondrial-like 4331292 OSNPB_030101900 4.7 4.4
 4.9
 0.1
 1.4
 1.6
 1.3
 2.1
 1.9
 -0.8
 1.0
 2.5
38 LOC4333659 uncharacterized LOC4333659 4333659 Os03g0665800 4.6 3.5
 5.8
 -0.4
 -0.5
 -0.8
 0.3
-0.1
 1.3
0.9
 1.6
1.5
 0.4
 2.5
 1.9
39 LOC4350906 serine--tRNA ligase, chloroplastic/mitochondrial 4350906 Os11g0610900 4.6 3.5
 5.8
 0.5
 3.6
 4.1
 0.8
 2.0
 2.4
 2.7
 6.4
 1.1
40 LOC4328168 ribose-phosphate pyrophosphokinase 1, chloroplastic-like 4328168 OSNPB_020127700 4.6 4.7
 4.5
 0.5
-0.0
 2.5
2.2
 2.8
2.3
 2.7
1.9
 2.7
2.1
 2.8
2.6
 2.1
1.9
 1.9
0.8
 1.9
1.1
41 LOC4328365 single-stranded DNA-binding protein WHY2, mitochondrial 4328365 Os02g0158400 4.5 4.2
 4.9
 1.1
 1.8
 1.2
 0.7
0.4
 2.3
0.7
 2.9
2.4
 0.2
 3.0
 1.5
42 LOC4328657 uncharacterized protein At2g34160 4328657 Os02g0202500 4.5 4.6
 4.5
 1.4
0.0
 3.3
1.0
 1.1
0.3
 2.2
2.0
 2.9
2.8
 4.0
3.2
 3.2
2.8
 2.3
1.2
 2.8
1.4
43 LOC4331122 60S ribosomal protein L23 4331122 Os02g0814700 4.5 4.2
 4.8
 1.1
0.9
 3.6
3.5
 3.5
3.2
 2.6
2.2
 2.2
2.1
 3.2
2.7
 2.5
1.2
 1.7
1.5
 2.8
2.7
44 LOC4345370 30S ribosomal protein S17 4345370 Os08g0359600 4.5 4.5
 4.5
 -0.6
 0.1
 -0.3
 3.8
1.9
 1.6
1.1
 0.9
0.6
 2.2
 0.8
0.1
 0.4
-0.2
45 LOC4338324 lactoylglutathione lyase 4338324 Os05g0295850 4.5 5.1
 3.9
 0.1
 -0.8
 1.0
 0.2
0.2
 2.0
1.1
 2.1
0.8
 2.6
 1.4
 1.3
46 LOC4346021 uncharacterized LOC4346021 4346021 Os08g0513300 4.5 4.8
 4.1
 0.4
0.4
 1.1
0.7
 1.4
1.1
 2.6
2.5
 1.6
1.6
 2.2
1.2
 0.1
 1.1
 2.2
47 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 4.5 3.1
 5.8
 0.6
 2.0
 0.7
 2.2
 2.2
 1.9
 1.5
 2.3
 1.7
48 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 4.5 4.8
 4.1
 0.6
 2.5
 1.3
 2.6
2.4
 4.3
4.2
 4.0
3.3
 7.9
 5.0
3.1
 3.6
2.5
49 LOC4330763 50S ribosomal protein L29, chloroplastic 4330763 Os02g0754300 4.4 5.0
 3.9
 -0.9
 -0.2
 1.0
 1.1
0.3
 1.9
1.7
 1.1
0.7
 4.0
2.9
 2.5
1.3
 1.1
50 LOC4351847 argininosuccinate synthase, chloroplastic 4351847 Os12g0235800 4.4 3.6
 5.3
 3.3
 6.9
 4.0
 2.3
0.9
 2.6
1.8
 4.4
2.7
 4.1
 3.5
1.5
 2.4
2.1
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