Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4334225   uncharacterized LOC4334225 
 osa-r.5   4334225   uncharacterized LOC4334225 
 osa-m.8   4334225   uncharacterized LOC4334225 
 ath-u.4   AT2G26500   cytochrome b6f complex subunit (petM) 
 gma-u.4   100500243   uncharacterized LOC100500243 
 gma-u.4   100500315   cytochrome b6f complex subunit petM-like 
 gma-u.4   100306224   uncharacterized LOC100306224 
 sly-u.4   101250638   uncharacterized LOC101250638 
 sly-u.4   101256427   uncharacterized LOC101256427 
 ppo-u.4   18104961   uncharacterized LOC18104961 
 ppo-u.4   18097853   uncharacterized LOC18097853 
 ppo-u.4   18102124   uncharacterized LOC18102124 
 mtr-u.4   25482675   uncharacterized LOC25482675 

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Top 50 coexpressed genes to 4334225 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  13 76 21.39
 osa1200   Carbon metabolism  5 257 3.69
 osa710   Carbon fixation in photosynthetic organisms  4 72 4.79
 osa630   Glyoxylate and dicarboxylate metabolism  3 72 3.33
 osa10   Glycolysis / Gluconeogenesis  2 143 -

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osa:LOC4334225 (uncharacterized LOC4334225) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4334225
osa-r.5
for
4334225
osa-m.8
for
4334225
ath-u.4
for
AT2G26500
gma-u.4
for
100500243
gma-u.4
for
100500315
gma-u.4
for
100306224
sly-u.4
for
101250638
sly-u.4
for
101256427
ppo-u.4
for
18104961
ppo-u.4
for
18097853
ppo-u.4
for
18102124
mtr-u.4
for
25482675
1 LOC4349114 glycine cleavage system H protein, mitochondrial 4349114 OSNPB_100516100 7.1 5.7
 8.5
 7.5
7.4
 8.6
5.2
 7.0
5.0
 9.3
5.9
 6.2
2.2
 5.7
3.9
 2.4
1.6
 3.4
2.3
 1.2
1.0
 4.4
2 LOC4350631 uncharacterized LOC4350631 4350631 Os11g0528500 6.6 6.9
 6.3
 8.4
 5.9
4.0
 4.9
4.1
 5.1
4.7
 3.9
 3.1
 1.4
 1.3
 2.4
 2.7
3 LOC4343570 cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like 4343570 OSNPB_070556200 6.6 7.6
 5.7
 14.0
 6.5
5.5
 7.9
5.6
 9.9
7.9
 7.5
 9.6
 4.8
0.7
 2.1
1.0
 1.5
1.5
 3.9
4 LOC4344439 ferredoxin-1, chloroplastic-like 4344439 OSNPB_080104600 6.5 6.1
 6.8
 10.7
3.1
 4.2
3.7
 7.7
4.1
 6.6
6.4
 4.7
0.5
 6.1
2.7
 3.7
2.4
 3.1
2.0
 2.3
2.0
 2.3
1.8
5 LOC9271497 uncharacterized LOC9271497 9271497 Os07g0243150 6.5 5.9
 7.1
 10.9
 5.0
3.4
 4.9
4.4
 9.3
6.1
 4.7
 7.1
 6.0
1.6
 2.8
2.0
 2.8
2.1
 2.3
1.8
6 LOC4332431 ATP synthase subunit b', chloroplastic 4332431 Os03g0278900 6.4 7.9
 5.0
 7.2
 3.4
 4.6
 4.8
 5.0
4.3
 4.6
3.3
 1.5
1.1
 1.4
0.9
 1.0
0.7
 1.7
7 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 6.2 6.8
 5.6
 8.2
 3.5
 9.2
 6.9
 4.0
3.0
 4.3
4.2
 5.2
 4.0
 2.9
 3.7
8 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 6.1 5.2
 7.0
 5.8
 3.8
3.4
 7.8
4.2
 7.2
5.3
 6.3
 6.0
 3.3
2.0
 2.7
2.2
 1.8
1.1
 2.6
9 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 6.1 4.6
 7.6
 7.0
 3.0
2.7
 5.6
3.0
 4.3
3.4
 4.1
 4.1
 5.1
2.7
 3.0
0.5
 2.8
1.4
 3.3
10 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 6.1 5.5
 6.7
 6.4
 3.3
3.2
 8.5
6.0
 8.9
6.9
 7.2
 5.4
 5.1
5.0
 2.6
2.1
 3.1
1.7
 3.0
2.1
11 LOC4343515 oxygen-evolving enhancer protein 3, chloroplastic-like 4343515 OSNPB_070544800 6.1 4.1
 8.1
 8.7
6.5
 4.2
4.0
 5.5
5.1
 6.0
5.7
 3.9
 5.1
 7.5
4.6
 3.8
3.4
 2.6
2.2
 3.3
12 LOC4336886 thylakoid lumenal 29 kDa protein, chloroplastic 4336886 Os04g0602100 6.1 6.6
 5.5
 2.3
 2.8
2.1
 3.6
1.9
 4.2
2.9
 0.9
 2.9
 3.5
 3.2
 2.4
 2.4
13 LOC4347166 photosystem I chlorophyll a/b-binding protein 6, chloroplastic 4347166 Os09g0439500 5.9 6.6
 5.2
 2.0
 5.6
3.8
 6.8
4.0
 8.3
3.8
 2.1
 3.9
 2.8
 3.1
 1.2
 2.9
14 LOC9270776 ATP synthase delta chain, chloroplastic 9270776 Os02g0750100 5.8 8.1
4.5
 3.3
2.9
 8.3
4.9
 5.1
4.9
 6.9
 5.4
 2.1
0.3
 2.4
0.2
 1.5
0.9
 4.6
15 LOC4324744 uncharacterized LOC4324744 4324744 Os01g0862200 5.8 4.9
 6.7
 2.4
 4.8
2.8
 3.1
2.6
 6.4
4.0
 4.3
 4.0
 2.7
 1.8
 0.9
 1.6
16 LOC4329888 protein HHL1, chloroplastic 4329888 Os02g0600200 5.8 5.9
 5.6
 4.7
 2.0
 3.6
 2.3
 2.5
 1.1
 3.0
 1.5
 0.6
 2.2
17 LOC4337587 uncharacterized LOC4337587 4337587 Os05g0110100 5.6 6.1
 5.2
 5.0
 2.6
1.8
 4.0
3.7
 3.2
2.0
 1.9
 0.6
 5.2
 3.3
 2.0
 3.7
18 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 5.6 6.0
 5.3
 7.9
4.0
 3.4
3.3
 6.3
5.0
 6.4
4.6
 5.4
 5.5
 5.3
5.2
 2.9
2.6
 2.9
2.4
 3.4
2.7
19 LOC4327543 uncharacterized LOC4327543 4327543 Os01g0805200 5.6 4.6
 6.6
 2.7
 3.9
3.7
 4.8
3.4
 4.9
4.1
 6.8
 4.6
 1.7
 0.2
 -0.2
 2.4
20 LOC4326140 peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic 4326140 Os01g0111100 5.5 6.4
 4.6
 0.7
 1.9
0.3
 2.6
2.5
 3.5
1.2
 1.3
 2.3
 2.0
 2.2
 2.0
 0.7
21 LOC4343189 protein CURVATURE THYLAKOID 1B, chloroplastic 4343189 Os07g0469100 5.4 5.2
 5.6
 7.4
 5.2
5.0
 5.9
5.3
 7.5
6.6
 6.1
 6.0
 3.3
3.2
 2.5
2.2
 2.2
1.6
 2.4
0.5
22 LOC4333370 uncharacterized LOC4333370 4333370 Os03g0595300 5.4 4.2
 6.6
 6.2
3.2
 5.3
4.6
 4.8
3.5
 7.9
4.1
 3.7
 3.0
 4.3
 2.3
 2.8
 2.1
23 LOC4342714 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 4342714 Os07g0212200 5.4 5.3
 5.5
 2.5
 5.2
4.2
 4.6
4.2
 5.3
4.5
 6.3
 4.9
 2.2
1.5
 1.6
1.1
 1.2
0.7
 3.2
24 LOC4329783 photosystem II 5 kDa protein, chloroplastic 4329783 Os02g0581100 5.4 4.2
 6.6
 9.2
 4.0
3.7
 8.0
6.5
 7.2
5.9
 0.7
 1.2
 6.8
2.9
 2.5
1.8
 2.9
2.5
 3.0
2.3
25 LOC4351966 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4351966 OSNPB_120274700 5.3 5.7
 4.9
 7.1
5.0
 5.6
5.6
 5.2
3.5
 7.2
5.2
 7.3
3.5
 7.9
4.1
 2.6
2.6
 4.0
3.2
 2.2
1.3
 3.8
3.7
26 LOC4341766 peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic 4341766 Os06g0663800 5.2 5.7
 4.7
 4.0
 5.9
 4.5
 6.6
 2.7
 3.6
 2.1
 1.3
 2.1
 2.1
27 LOC4325238 NAD(P)H-quinone oxidoreductase subunit O, chloroplastic 4325238 Os01g0959900 5.2 5.1
 5.3
 3.1
 3.8
 4.4
 5.6
 2.7
 2.2
 2.5
 1.8
 1.5
 1.7
28 LOC4341496 fructose-bisphosphate aldolase 5, cytosolic 4341496 Os06g0608700 5.2 5.5
 4.9
 1.9
1.1
 2.7
2.0
 2.5
2.0
 3.3
2.5
 3.0
-0.4
 2.5
1.4
 1.0
0.9
 2.9
2.3
 1.0
0.9
 0.1
-0.2
29 LOC4342001 thylakoid lumenal 16.5 kDa protein, chloroplastic 4342001 Os06g0705100 5.2 5.4
 4.9
 5.2
 5.2
4.2
 7.1
5.4
 8.4
3.7
 2.1
 1.9
 2.5
0.8
 6.5
1.7
 1.2
0.8
 2.7
30 LOC4334749 30S ribosomal protein S6 alpha, chloroplastic 4334749 Os03g0843400 5.2 6.3
 4.0
 3.7
 2.1
0.9
 3.1
2.6
 2.6
1.5
 2.7
 1.9
 4.3
 1.7
 1.7
 2.5
31 LOC4343070 photosystem I reaction center subunit IV, chloroplastic 4343070 Os07g0435300 5.1 3.8
 6.5
 7.6
6.9
 3.9
3.3
 6.7
4.7
 5.6
3.8
 6.8
3.5
 5.1
2.5
 6.3
 2.0
 2.3
 3.1
2.1
32 LOC4336633 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic 4336633 Os04g0557000 5.1 5.9
 4.3









33 LOC4345153 photosynthetic NDH subunit of subcomplex B 1, chloroplastic 4345153 Os08g0276100 5.0 6.3
 3.8
 2.9
 3.7
2.8
 4.2
3.5
 3.8
2.9
 3.4
 1.8
 2.1
 4.0
 0.7
 0.9
34 LOC4349239 protein CURVATURE THYLAKOID 1B, chloroplastic 4349239 Os10g0536500 5.0 4.2
 5.8
 7.4
 5.2
5.0
 5.9
5.3
 7.5
6.6
 6.1
 6.0
 3.3
3.2
 2.5
2.2
 2.2
1.6
 2.4
0.5
35 LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic 4330704 Os02g0744000 5.0 4.9
 5.1
 5.1
 5.0
4.1
 4.5
3.9
 4.8
4.4
 4.0
 3.3
 1.2
 4.4
 1.4
 3.9
36 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 4.9 4.7
 5.1
 6.9
4.3
 4.6
3.2
 8.2
5.1
 7.4
5.5
 2.7
2.1
 3.7
2.8
 5.7
 3.4
 2.9
 3.7
37 LOC4331275 epimerase family protein SDR39U1 homolog, chloroplastic 4331275 Os02g0834700 4.9 6.0
 3.9
 2.4
 3.1
0.7
 4.3
1.4
 5.5
2.6
 1.6
 2.1
 0.9
 1.5
 0.8
 1.7
38 LOC4324032 plastidal glycolate/glycerate translocator 1, chloroplastic 4324032 Os01g0511600 4.9 5.3
 4.4
 3.3
 1.6
0.5
 1.9
-0.4
 1.2
0.5
 0.6
 3.1
 2.7
 1.2
 0.7
 1.9
39 LOC4352021 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4352021 Os12g0292400 4.8 4.6
 5.1
 7.1
5.0
 5.6
5.6
 5.2
3.5
 7.2
5.2
 7.3
3.5
 7.9
4.1
 2.6
2.6
 4.0
3.2
 2.2
1.3
 3.8
3.7
40 LOC4337264 uncharacterized LOC4337264 4337264 Os04g0657900 4.8 4.3
 5.3
 3.7
 3.1
 3.2
 4.1
 2.6
 2.2
 1.3
 0.5
 0.8
 1.6
41 LOC4339204 phosphoglycerate kinase, chloroplastic 4339204 Os05g0496200 4.8 4.9
 4.7
 3.6
0.3
 2.3
2.0
 5.3
3.7
 3.9
3.0
 1.6
-1.6
 4.0
-0.8
 2.1
1.3
 2.4
2.4
 1.5
0.9
 2.6
0.2
42 LOC4348287 uncharacterized LOC4348287 4348287 Os10g0213700 4.8 5.2
 4.4
 2.2
 5.2
 7.1
 6.9
 2.4
 2.8
 0.1
 1.5
 1.4
 1.7
43 LOC4349041 thylakoid lumenal 17.4 kDa protein, chloroplastic 4349041 Os10g0502000 4.8 3.6
 6.0
 3.5
 3.8
3.5
 5.8
3.6
 5.7
3.3
 4.2
 3.1
 2.5
 1.8
 1.4
 1.6
44 LOC4324275 50S ribosomal protein 5, chloroplastic 4324275 Os01g0278900 4.8 6.1
 3.5









45 LOC4340391 putative peroxiredoxin Q, chloroplastic 4340391 OSNPB_060196300 4.7 5.8
 3.6
 5.1
 4.4
3.5
 5.5
4.1
 6.8
4.8
 4.1
 6.8
 1.2
0.6
 1.9
0.1
 2.5
2.3
 1.6
46 LOC4326517 uncharacterized LOC4326517 4326517 Os01g0940600 4.7 4.4
 5.0
 1.3
 0.1
 1.0
 0.4
 0.7
 1.1
 1.9
 1.1
 2.3
 0.8
47 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 4.7 4.1
 5.3
 8.7
 3.8
3.0
 7.9
5.6
 7.4
6.7
 3.4
 6.1
 7.8
4.7
 3.0
2.1
 2.9
2.4
 2.5
1.0
48 LOC4346075 uncharacterized LOC4346075 4346075 Os08g0521800 4.6 4.8
 4.5
 1.0
 1.2
0.7
 1.3
0.6
 1.3
0.7
 2.6
 2.0
 2.1
 0.3
 1.2
 1.2
49 LOC4334032 uncharacterized LOC4334032 4334032 Os03g0736600 4.6 3.5
 5.7









50 LOC4342404 photosystem I reaction center subunit psaK, chloroplastic 4342404 Os07g0148900 4.6 4.4
 4.8
 8.5
 3.7
3.6
 5.3
4.7
 5.3
4.7
 4.6
 5.1
 5.5
4.1
 1.8
1.7
 2.5
2.3
 3.2
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