Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4336329   2,3-dimethylmalate lyase 
 osa-r.5   4336329   2,3-dimethylmalate lyase 
 osa-m.8   4336329   2,3-dimethylmalate lyase 
 osa-u.4   4335655   2,3-dimethylmalate lyase 
 ath-u.4   AT2G43180   Phosphoenolpyruvate carboxylase family protein 
 gma-u.4   100806389   2,3-dimethylmalate lyase 
 gma-u.4   100818553   ICL/PEPM domain-containing protein 
 sly-u.4   101247324   2,3-dimethylmalate lyase 
 ppo-u.4   7466177   2,3-dimethylmalate lyase 
 mtr-u.4   120576929   2,3-dimethylmalate lyase-like 

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Top 50 coexpressed genes to 4336329 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1230   Biosynthesis of amino acids  17 220 21.96
 osa300   Lysine biosynthesis  4 13 7.91
 osa1200   Carbon metabolism  4 257 2.68
 osa3010   Ribosome  4 336 2.27
 osa220   Arginine biosynthesis  3 34 4.30

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osa:LOC4336329 (2,3-dimethylmalate lyase) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4336329
osa-r.5
for
4336329
osa-m.8
for
4336329
osa-u.4
for
4335655
ath-u.4
for
AT2G43180
gma-u.4
for
100806389
gma-u.4
for
100818553
sly-u.4
for
101247324
ppo-u.4
for
7466177
mtr-u.4
for
120576929
1 LOC4334640 anthranilate synthase alpha subunit 1, chloroplastic-like 4334640 OSNPB_030826500 6.0 4.2
 7.9
 2.7
0.3
 1.0
0.8
 2.8
-0.3
 2.5
0.6
 2.9
 1.4
-0.3
 1.4
0.7
2 LOC4332296 imidazole glycerol phosphate synthase hisHF, chloroplastic 4332296 Os03g0256400 5.7 4.8
 6.5
 3.7
 2.7
 1.9
0.3
 0.1
0.1
 3.3
 2.0
-0.6
 1.4
3 LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic 4333613 Os03g0655700 5.4 5.4
 5.3
 4.3
 3.1
1.0
 3.3
3.3
 1.9
0.9
 4.6
 0.5
 1.2
4 LOC4329234 probable diaminopimelate decarboxylase, chloroplastic 4329234 OSNPB_020440000 5.4 5.3
 5.4
 2.3
 2.4
2.2
 2.3
2.0
 5.1
1.0
 2.1
 0.0
-0.0
 1.3
5 LOC4332563 probable LL-diaminopimelate aminotransferase, chloroplastic 4332563 OSNPB_030299900 5.2 5.0
 5.5
 2.1
 1.9
0.0
 2.7
0.6
 1.2
1.1
 5.4
-0.4
 1.2
-0.8
 1.6
-0.3
6 LOC4344224 uncharacterized LOC4344224 4344224 Os07g0668200 5.2 4.9
 5.6
 2.6
 1.0
0.4
 0.4
-0.4
 -0.9
-2.3
 -0.4
 1.0
 1.4
7 LOC4346021 uncharacterized LOC4346021 4346021 Os08g0513300 5.1 4.0
 6.2
 1.7
 1.4
0.1
 4.1
0.6
 1.3
0.3
 -0.1
 2.0
 1.1
8 LOC4348590 uncharacterized LOC4348590 4348590 Os10g0407100 4.8 3.7
 6.0
 1.1
0.5
 0.4
 0.7
0.1
 0.9
0.2
 2.4
-0.3
 1.7
0.4
 1.1
0.8
9 LOC4343379 reactive Intermediate Deaminase A, chloroplastic 4343379 Os07g0516200 4.8 3.7
 5.9
 3.7
 -1.0
 1.8
1.6
 4.0
2.2
 3.4
0.2
 0.5
0.3
 2.2
0.9
10 LOC4330585 tRNA (guanine(9)-N1)-methyltransferase 4330585 Os02g0725600 4.7 4.3
 5.2
 0.7
 1.4
 1.8
-0.0
 2.6
1.3
 1.2
 1.3
-0.3
 0.1
11 LOC4332779 putative tRNA pseudouridine synthase 4332779 Os03g0338600 4.6 4.0
 5.3
 0.2
 3.4
 2.0
1.6
 2.3
1.6
 1.1
 1.5
 1.6
0.4
12 LOC4336353 isocitrate dehydrogenase [NADP] 4336353 Os04g0508200 4.6 4.8
 4.4
 3.2
2.9
 3.6
1.7
 1.6
1.5
 -0.3
-0.4
 2.4
2.2
 2.4
0.9
 0.9
0.1
13 LOC4345328 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic 4345328 Os08g0342400 4.5 4.3
 4.8
 3.7
-0.3
 1.7
1.4
 1.5
1.0
 1.8
0.3
 3.4
0.4
 -0.9
-0.9
 2.3
1.8
14 LOC4346596 enoyl-[acyl-carrier-protein] reductase [NADH] 2, chloroplastic-like 4346596 OSNPB_090277800 4.5 4.6
 4.4
 2.0
1.9
 -0.7
 1.8
1.4
 1.4
0.9
 1.0
1.0
 0.2
-0.0
 1.5
0.2
15 LOC4349400 uncharacterized LOC4349400 4349400 Os10g0563400 4.4 3.7
 5.1
 0.2
 2.0
 1.5
 -0.4
 1.6
 3.1
 1.5
16 LOC4349687 alpha-L-arabinofuranosidase 1 4349687 Os11g0132600 4.3 4.0
 4.6
 1.1
1.0
 0.3
 1.3
-0.5
 1.3
1.1
 -1.1
 -0.2
-1.4
 0.4
0.3
17 LOC9272292 50S ribosomal protein L25 9272292 Os03g0612600 4.3 4.0
 4.7
 1.8
 0.9
 0.1
 0.3
 1.6
 0.6
-0.6
 1.8
18 LOC4342437 putative deoxyribonuclease TATDN1 4342437 Os07g0158200 4.2 2.3
 6.2
 1.1
 0.8
 0.5
 3.4
 1.7
 1.2
 1.0
19 LOC4324261 histidine biosynthesis bifunctional protein hisIE, chloroplastic 4324261 Os01g0276500 4.2 3.8
 4.6
 2.1
 0.6
 0.4
 1.2
 1.9
 -0.3
 1.8
20 LOC4344854 phosphoribosylamine--glycine ligase 4344854 Os08g0191200 4.2 3.7
 4.6
 1.0
0.9
 1.9
 1.1
 1.1
 2.5
 1.7
1.3
21 LOC4335473 pentatricopeptide repeat-containing protein At1g60770 4335473 Os04g0320200 4.2 3.7
 4.6
 2.3
 0.9
 -1.0
 -1.4
 0.3
 0.4
0.4
 0.3
22 LOC4332596 argininosuccinate lyase, chloroplastic 4332596 Os03g0305500 4.1 3.3
 4.9
 3.9
 0.9
 1.8
1.4
 0.6
0.5
 0.5
 0.1
 3.7
23 LOC4329224 probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic 4329224 OSNPB_020436400 4.0 4.5
 3.5
 2.1
0.1
 0.3
0.1
 2.5
0.6
 2.9
0.2
 1.5
 -0.4
 1.4
24 LOC4336869 P-loop guanosine triphosphatase YjiA 4336869 Os04g0599700 4.0 3.6
 4.4
 1.0
0.7
 -1.4
 2.1
 0.6
 0.7
25 LOC4345281 GMP synthase [glutamine-hydrolyzing] 4345281 Os08g0326600 4.0 4.7
 3.2
 2.1
 -1.0
 -0.2
-0.5
 -0.3
-0.8
 -1.2
 0.5
 0.4
26 LOC9269231 ornithine carbamoyltransferase, chloroplastic 9269231 Os02g0704800 3.9 3.4
 4.3
 2.8
 2.4
 1.5
0.9
 1.2
1.1
 1.8
1.4
 0.5
 1.4
-0.7
27 LOC4338324 lactoylglutathione lyase 4338324 Os05g0295850 3.8 3.4
 4.2
 1.1
 -0.5
 2.1
1.8
 3.6
2.7
 1.2
 1.0
 0.2
28 LOC4342564 pyruvate kinase isozyme A, chloroplastic 4342564 Os07g0181000 3.8 5.0
 2.6
 3.7
 -0.6
 1.9
0.4
 -0.2
-0.4
 1.3
 1.4
0.4
 1.8
29 LOC4336715 E3 ubiquitin ligase BIG BROTHER-related 4336715 Os04g0571200 3.8 4.4
 3.2
 0.9


-1.0

30 LOC4331535 glutathione S-transferase F11 4331535 Os03g0135300 3.7 2.5
 5.0
 1.4
 -0.2
-0.2
 0.9
0.2
 1.7
1.3
 2.1
-0.1
 -0.4
-0.7
 0.6
0.3
31 LOC4335926 protein TIC 40, chloroplastic 4335926 Os04g0439900 3.7 4.1
 3.3
 2.2
 2.3
 2.2
1.5
 0.8
-0.1
 3.7
 2.2
1.7
 3.3
32 LOC4337316 cell division protein FtsZ homolog 1, chloroplastic 4337316 Os04g0665400 3.7 3.6
 3.9
 1.4
 0.2
 3.6
2.4
 2.3
1.2
 1.8
0.5
 1.8
 1.0
0.9
33 LOC4331176 60S ribosomal protein L28-1 4331176 Os02g0821200 3.7 4.0
 3.4
 2.3
1.9
 -0.5
-0.8
 0.8
0.2
 1.0
-0.1
 -1.0
-1.1
 -0.3
-0.3
 0.6
-0.3
34 LOC4332127 uncharacterized LOC4332127 4332127 Os03g0226700 3.7 2.0
 5.4
 1.2
 1.4
 3.6
2.5
 1.7
0.2
 1.4
 1.7
 1.6
35 LOC4333537 DNA repair protein recA homolog 1, chloroplastic 4333537 Os03g0639700 3.7 2.4
 4.9
 1.9
 3.1
 5.9
 -0.8
 2.0
 3.2
 1.9
36 LOC4328671 50S ribosomal protein L19, chloroplastic 4328671 Os02g0205000 3.6 3.1
 4.1
 1.1
 1.1
0.7
 0.3
-0.4
 2.3
0.8
 0.5
 -0.2
 1.5
37 LOC4346318 dihydroxy-acid dehydratase, chloroplastic 4346318 Os08g0559600 3.6 3.0
 4.3
 1.9
 2.0
 2.3
 0.8
 1.8
1.1
 0.7
-0.5
 0.9
38 LOC4342620 bifunctional phosphatase IMPL2, chloroplastic 4342620 Os07g0191000 3.6 3.3
 4.0
 1.3
 2.0
 1.9
 5.1
 3.4
 -0.4
 0.6
39 LOC4352058 serine hydroxymethyltransferase 4 4352058 Os12g0409000 3.6 3.1
 4.1
 1.7
0.8
 -1.0
-1.7
 1.8
0.7
 -0.1
-1.0
 0.2
0.1
 -0.1
-1.2
 0.7
-0.6
40 LOC4327826 WD-40 repeat-containing protein MSI4 4327826 Os01g0710000 3.6 3.6
 3.6
 2.0
 0.4
0.3
 1.3
0.3
 1.2
1.1
 1.5
1.0
 2.0
0.9
 1.2
0.8
41 LOC4341354 elongation factor 1-gamma 3-like 4341354 OSNPB_060571400 3.6 3.1
 4.0
 2.5
2.1
 -1.4
-1.7
 1.8
0.7
 -0.0
-0.1
 0.1
-0.9
 0.2
-0.2
 1.3
0.8
42 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 3.6 4.5
 2.7
 1.4
 4.1
 3.8
 -2.3
 4.7
 2.8
 2.0
43 LOC9267107 tRNA pseudouridine synthase A 1 9267107 Os05g0279300 3.6 2.6
 4.5
 -0.1
 3.3
 0.3
-0.0
 0.4
-0.4
 3.3
 0.9
44 LOC4337794 pentatricopeptide repeat-containing protein At4g35850, mitochondrial 4337794 Os05g0145600 3.5 2.5
 4.6
 1.4
 0.8
 0.4
0.1
 -0.4
-0.7
 1.1
 2.3
 0.2
45 LOC4329028 uncharacterized LOC4329028 4329028 Os02g0282100 3.5 2.1
 4.9
 1.2
 -1.1
 0.3
-1.4
 -0.3
-0.3
 0.0
 -0.5
-0.6
 1.0
0.3
46 LOC4344683 transaldolase 4344683 Os08g0154300 3.5 3.4
 3.6
 1.9
 0.2
 1.4
1.1
 1.3
-1.1
 6.4
 0.5
 1.7
47 LOC4347105 5'-nucleotidase domain-containing protein DDB_G0275467 4347105 Os09g0424600 3.5 3.1
 3.9
 1.6
 1.1
 2.3
 0.4
 1.1
 4.8
 1.2
48 LOC4324645 30S ribosomal protein S6 4324645 Os01g0220300 3.5 1.8
 5.1
 0.5
 -0.1
 -0.8
-1.4
 0.3
-1.3
 1.6
1.0
 0.9
 1.0
0.8
49 LOC4351847 argininosuccinate synthase, chloroplastic 4351847 Os12g0235800 3.5 3.1
 3.8
 3.5
 0.4
 1.1
1.0
 0.9
0.6
 2.0
 0.7
-0.5
 1.5
1.2
50 LOC4332547 malonyl CoA-acyl carrier protein transacylase 4332547 Os03g0297400 3.5 4.0
 2.9
 2.2
 1.6
 1.7
1.1
 -0.5
-1.2
 2.0
 -1.0
 1.5
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