Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4336886   thylakoid lumenal 29 kDa protein, chloroplastic 
 osa-r.5   4336886   thylakoid lumenal 29 kDa protein, chloroplastic 
 osa-m.8   4336886   thylakoid lumenal 29 kDa protein, chloroplastic 
 ath-u.4   TL29   ascorbate peroxidase 4 
 gma-u.4   100799504   thylakoid lumenal 29 kDa protein, chloroplastic 
 gma-u.4   100795192   peroxidase-like protein 
 sly-u.4   101263901   thylakoid lumenal 29 kDa protein, chloroplastic-like 
 ppo-u.4   7468886   thylakoid lumenal 29 kDa protein, chloroplastic 
 mtr-u.4   11437370   thylakoid lumenal 29 kDa protein, chloroplastic 

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Top 50 coexpressed genes to 4336886 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  7 76 9.64
 osa1200   Carbon metabolism  6 257 4.79
 osa710   Carbon fixation in photosynthetic organisms  5 72 6.37
 osa196   Photosynthesis - antenna proteins  3 15 5.41
 osa630   Glyoxylate and dicarboxylate metabolism  3 72 3.33

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osa:LOC4336886 (thylakoid lumenal 29 kDa protein, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4336886
osa-r.5
for
4336886
osa-m.8
for
4336886
ath-u.4
for
TL29
gma-u.4
for
100799504
gma-u.4
for
100795192
sly-u.4
for
101263901
ppo-u.4
for
7468886
mtr-u.4
for
11437370
1 LOC4342001 thylakoid lumenal 16.5 kDa protein, chloroplastic 4342001 Os06g0705100 8.9 8.3
 9.4
 5.4
 3.9
1.9
 4.0
2.9
 1.2
 4.7
1.4
 3.9
2 LOC4328925 protein THYLAKOID RHODANESE-LIKE, chloroplastic-like 4328925 Os02g0257300 8.4 6.6
 10.1
 6.3
 4.1
3.0
 5.3
4.4
 3.8
1.8
 2.9
1.5
 3.8
3 LOC4329643 probable L-ascorbate peroxidase 8, chloroplastic 4329643 OSNPB_020553200 7.2 7.5
 6.9
 7.1
0.7
 1.7
1.4
 3.2
2.3
 1.2
0.2
 0.3
0.3
 1.1
4 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 7.1 6.1
 8.1
 6.4
 3.2
2.4
 4.4
3.5
 3.8
 4.0
1.4
 2.3
5 LOC4345443 peptidyl-prolyl cis-trans isomerase, chloroplastic 4345443 Os08g0382400 6.8 5.9
 7.8
 6.0
 4.3
4.2
 7.5
5.6
 3.6
 0.9
 2.5
6 LOC4339204 phosphoglycerate kinase, chloroplastic 4339204 Os05g0496200 6.7 7.4
 6.0
 4.0
1.7
 3.8
2.5
 5.1
4.4
 3.1
-0.3
 2.3
1.6
 5.4
-0.6
7 LOC4329783 photosystem II 5 kDa protein, chloroplastic 4329783 Os02g0581100 6.3 5.5
 7.1
 7.5
 3.0
2.5
 4.5
3.3
 0.0
 3.4
2.0
 3.4
2.5
8 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 6.2 4.9
 7.6
 4.8
 3.1
2.9
 5.4
3.1
 1.1
 5.3
2.3
 3.2
9 LOC4347935 protein TIC 62, chloroplastic-like 4347935 Os10g0100300 6.1 3.7
 8.5
 9.2
 4.0
2.5
 5.7
3.8
 3.2
 2.4
1.2
 2.7
10 LOC4334225 uncharacterized LOC4334225 4334225 Os03g0765900 6.1 6.6
 5.5
 2.3
 3.0
2.9
 4.2
3.6
 2.9
0.9
 3.5
3.2
 2.4
11 LOC4352083 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 4352083 Os12g0420200 6.1 6.5
 5.6
 4.8
 3.4
1.5
 4.1
2.6
 2.2
 1.1
 2.5
12 LOC4347166 photosystem I chlorophyll a/b-binding protein 6, chloroplastic 4347166 Os09g0439500 5.9 5.8
 5.9
 7.0
 4.5
2.8
 6.0
3.5
 1.9
 4.0
 3.3
13 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 5.7 4.6
 6.8
 8.2
7.2
 4.2
3.5
 5.1
4.7
 2.5
1.3
 6.6
 3.1
14 LOC4343189 protein CURVATURE THYLAKOID 1B, chloroplastic 4343189 Os07g0469100 5.5 5.9
 5.1
 6.5
 4.2
3.2
 6.5
3.4
 1.4
 5.3
3.2
 5.8
1.5
15 LOC4328917 protein TSS 4328917 Os02g0255700 5.5 6.4
 4.7
 2.0
 2.1
2.0
 3.9
2.8
 1.1
 2.2
0.5
 2.6
16 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 5.4 4.4
 6.5
 5.9
 4.2
 5.3
 2.9
1.8
 4.5
 3.0
17 LOC4351966 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4351966 OSNPB_120274700 5.4 6.6
 4.1
 5.0
4.4
 2.3
1.8
 2.9
1.6
 1.9
1.8
 3.0
2.8
 2.6
2.4
18 LOC4330625 protein CURVATURE THYLAKOID 1A, chloroplastic 4330625 Os02g0731600 5.3 3.3
 7.3
 6.6
 4.7
4.0
 7.1
6.4
 2.4
1.8
 4.1
2.5
 2.5
19 LOC4336044 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 4336044 Os04g0459500 5.3 5.1
 5.5
 7.6
3.0
 3.0
2.5
 3.1
2.8
 2.7
2.7
 3.0
 5.7
20 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 5.3 5.6
 5.0
 6.9
 3.0
2.8
 3.9
3.4
 2.3
 5.5
4.4
 2.7
1.9
21 LOC4324705 chlorophyll a-b binding protein of LHCII type 1 4324705 Os01g0720500 5.2 3.9
 6.4
 6.6
6.3
 4.3
4.0
 4.8
4.3
 3.3
3.0
 4.8
4.7
 4.3
3.3
22 LOC4331129 uncharacterized LOC4331129 4331129 Os02g0815400 5.2 4.0
 6.3
 3.7
 0.4
 2.3
 1.6
 1.4
 2.6
23 LOC4340162 uncharacterized LOC4340162 4340162 Os06g0152800 5.1 5.2
 5.0





24 LOC4352021 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4352021 Os12g0292400 5.1 4.6
 5.5
 5.0
4.4
 2.3
1.8
 2.9
1.6
 1.9
1.8
 3.0
2.8
 2.6
2.4
25 LOC4330413 phosphoribulokinase, chloroplastic 4330413 Os02g0698000 5.1 5.2
 4.9
 4.1
 1.7
1.5
 2.8
2.4
 3.2
 3.1
1.9
 7.5
26 LOC4326140 peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic 4326140 Os01g0111100 5.1 4.2
 5.9
 3.9
 1.7
1.5
 3.4
2.1
 2.4
 2.1
 2.4
27 LOC4342714 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 4342714 Os07g0212200 5.0 5.0
 5.1
 7.4
 2.7
2.0
 5.8
4.0
 2.3
 2.7
2.5
 5.8
28 LOC4325097 uncharacterized LOC4325097 4325097 Os01g0896500 5.0 4.7
 5.3
 5.9
 2.2
1.9
 4.5
3.4
 2.5
 1.2
 0.5
29 LOC4327544 psbP domain-containing protein 6, chloroplastic 4327544 Os01g0805300 5.0 5.3
 4.6
 5.6
 3.0
2.5
 5.2
3.6
 2.8
 1.5
 6.7
30 LOC4347585 uncharacterized LOC4347585 4347585 Os09g0517000 4.9 3.9
 6.0
 9.3
 4.0
3.9
 5.4
4.8
 2.3
 5.0
 0.6
31 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 4.9 2.7
 7.1
 6.1
 3.9
3.2
 5.2
3.4
 2.9
2.0
 3.7
 2.9
32 LOC4340391 putative peroxiredoxin Q, chloroplastic 4340391 OSNPB_060196300 4.9 6.2
 3.6
 5.3
 5.3
4.4
 7.3
5.9
 2.2
 3.0
2.0
 4.3
33 LOC4328151 light-harvesting complex-like protein 3 isotype 2, chloroplastic 4328151 Os02g0125700 4.9 4.2
 5.5
 5.1
1.6
 2.9
2.4
 4.4
4.2
 1.9
1.5
 0.9
-0.8
 0.6
34 LOC4338302 protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic 4338302 Os05g0291700 4.8 7.0
 2.7
 8.4
 3.5
2.2
 7.1
5.5
 3.3
 3.2
3.0
 4.4
35 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 4.8 4.6
 5.0
 5.2
 4.6
1.6
 7.1
1.4
 0.6
 3.5
3.0
 2.0
1.9
36 LOC4344733 uncharacterized LOC4344733 4344733 Os08g0162600 4.8 5.6
 4.0
 1.4
 1.4
1.0
 1.7
1.6
 1.7
 1.4
 0.1
37 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 4.8 4.7
 4.8





38 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 4.7 3.1
 6.3
 14.2
 4.9
2.2
 5.7
4.1
 2.3
 1.7
 5.6
39 LOC4329862 rhodanese-like domain-containing protein 11, chloroplastic 4329862 Os02g0596000 4.7 4.7
 4.7
 4.0
 0.9
 0.8
 1.0
 0.2
 2.4
40 LOC4340015 magnesium protoporphyrin IX methyltransferase, chloroplastic 4340015 Os06g0132400 4.7 5.2
 4.3
 5.7
 3.8
3.0
 6.3
5.6
 0.5
 2.4
 4.8
41 LOC4349114 glycine cleavage system H protein, mitochondrial 4349114 OSNPB_100516100 4.7 4.7
 4.7
 6.7
3.8
 3.6
3.5
 6.3
4.1
 2.9
2.2
 3.5
2.2
 8.2
42 LOC4333259 magnesium-chelatase subunit ChlI, chloroplastic-like 4333259 OSNPB_030563300 4.7 6.5
 2.9
 6.3
5.7
 4.6
3.8
 6.2
5.4
 1.4
 3.5
0.7
 4.5
-0.7
43 LOC4346192 peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic 4346192 Os08g0541400 4.7 5.1
 4.4
 9.2
 3.3
2.9
 5.0
4.0
 2.9
 3.8
3.1
 4.0
44 LOC4324744 uncharacterized LOC4324744 4324744 Os01g0862200 4.7 4.8
 4.6
 4.4
 1.8
1.3
 4.4
3.0
 1.8
 1.7
 0.6
45 LOC4333746 ferredoxin C 2, chloroplastic 4333746 Os03g0685000 4.7 4.5
 4.9
 4.8
 2.7
1.7
 3.9
2.0
 1.5
 1.2
 2.8
46 LOC4337069 chloroplastic lipocalin 4337069 Os04g0626400 4.7 3.8
 5.6
 2.2
 0.8
0.8
 1.8
0.3
 -0.8
 0.3
 1.5
47 LOC4348209 uncharacterized LOC4348209 4348209 Os10g0181600 4.7 3.0
 6.3
2.5
2.1
 3.4
2.8
 2.6
 -0.3
 5.5
48 LOC4331275 epimerase family protein SDR39U1 homolog, chloroplastic 4331275 Os02g0834700 4.7 5.0
 4.3
 4.7
 1.8
1.6
 5.0
2.1
 1.0
 0.3
 2.3
49 LOC4344439 ferredoxin-1, chloroplastic-like 4344439 OSNPB_080104600 4.7 5.2
 4.1
 3.4
0.0
 4.2
3.7
 6.3
5.7
 2.5
1.0
 3.7
2.3
 4.5
1.3
50 LOC4324026 protein FLUORESCENT IN BLUE LIGHT, chloroplastic 4324026 Os01g0510600 4.6 4.5
 4.8
 2.7
 1.9
1.5
 2.6
1.9
 1.0
0.9
 -0.4
 5.0
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