Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4343583   chlorophyll a-b binding protein CP29.1, chloroplastic 
 osa-r.5   4343583   chlorophyll a-b binding protein CP29.1, chloroplastic 
 osa-m.8   4343583   chlorophyll a-b binding protein CP29.1, chloroplastic 
 ath-u.4   LHCB4.3   light harvesting complex photosystem II 
 ath-u.4   LHCB4.1   light harvesting complex photosystem II 
 ath-u.4   LHCB4.2   light harvesting complex photosystem II 
 gma-u.4   100785180   chlorophyll a-b binding protein CP29.2, chloroplastic 
 gma-u.4   100794604   chlorophyll a-b binding protein CP29.3, chloroplastic 
 gma-u.4   100820335   chlorophyll a-b binding protein CP29.3, chloroplastic 
 sly-u.4   101249002   chlorophyll a-b binding protein CP29.1, chloroplastic 
 ppo-u.4   7488015   chlorophyll a-b binding protein CP29.3, chloroplastic 
 ppo-u.4   7466067   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.4   7487313   chlorophyll a-b binding protein CP29.2, chloroplastic 
 mtr-u.4   11406674   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-u.4   11422473   chlorophyll a-b binding protein CP29.1, chloroplastic 

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Top 50 coexpressed genes to 4343583 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  18 76 32.63
 osa196   Photosynthesis - antenna proteins  11 14 27.40
 osa860   Porphyrin metabolism  4 42 5.74
 osa710   Carbon fixation in photosynthetic organisms  3 72 3.33
 osa1200   Carbon metabolism  3 273 -

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osa:LOC4343583 (chlorophyll a-b binding protein CP29.1, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4343583
osa-r.5
for
4343583
osa-m.8
for
4343583
ath-u.4
for
LHCB4.3
ath-u.4
for
LHCB4.1
ath-u.4
for
LHCB4.2
gma-u.4
for
100785180
gma-u.4
for
100794604
gma-u.4
for
100820335
sly-u.4
for
101249002
ppo-u.4
for
7488015
ppo-u.4
for
7466067
ppo-u.4
for
7487313
mtr-u.4
for
11406674
mtr-u.4
for
11422473
1 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 20.2 17.6
 22.8
 -0.2
 15.7
 15.2
 8.7
8.5
 1.8
0.2
 1.8
1.4
 7.8
6.5
 2.8
0.9
 9.8
2.2
 15.2
2.9
 3.8
 8.0
2 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 17.7 13.8
 21.5
 0.0
 14.3
 17.0
 12.5
11.2
 1.9
1.7
 1.6
0.7
 7.0
4.5
 2.8
 6.2
 10.0
 3.7
 6.4
3 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 14.7 11.3
 18.1
 0.9
 14.4
 13.3
 9.7
7.3
 1.5
1.1
 1.5
1.3
 9.3
 3.9
0.5
 5.6
4.5
 6.4
6.3
 3.0
 6.1
4 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 14.1 11.3
 17.0
 0.5
-0.1
 12.7
10.1
 13.9
13.9
 12.2
11.6
 2.3
1.5
 1.7
1.6
 9.4
7.7
 3.7
3.1
 10.6
8.5
 13.7
13.1
 4.2
3.2
 10.9
5.6
5 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 13.8 12.8
 14.8
 0.0
 17.9
 14.4
 11.0
10.1
 1.8
1.7
 2.1
2.0
 10.0
4.9
 3.2
 6.8
 10.6
 8.3
 8.2
6 LOC4342404 photosystem I reaction center subunit psaK, chloroplastic 4342404 Os07g0148900 12.6 9.9
 15.3
 1.7
 13.3
 10.8
 10.4
8.1
 2.4
1.9
 2.3
1.6
 8.4
 3.2
2.6
 7.7
3.2
 7.0
5.4
 3.7
 4.8
7 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 12.5 7.9
 17.0











8 LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic 4350176 Os11g0242800 12.3 11.0
 13.5
 0.6
 16.2
 14.0
 10.7
8.5
 2.8
2.4
 2.6
2.1
 11.9
 3.4
3.2
 5.2
4.7
 9.5
8.5
 4.9
 6.3
9 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 11.9 10.0
 13.8
 0.5
-0.1
 12.7
10.1
 13.9
13.9
 12.2
11.6
 2.3
1.5
 1.7
1.6
 9.4
7.7
 3.7
3.1
 10.6
8.5
 13.7
13.1
 4.2
3.2
 10.9
5.6
10 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 11.6 8.3
 14.8
 0.5
 15.0
 10.2
 9.1
 2.2
 2.3
 12.0
7.1
 4.3
 7.3
 10.8
 4.0
 5.7
11 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 11.1 8.1
 14.1
 2.8
1.2
 18.2
8.8
 10.4
6.5
 9.0
8.6
 3.7
2.7
 2.1
1.6
 10.5
 4.7
4.2
 11.6
9.7
 13.2
11.0
 4.9
2.4
 4.6
3.8
12 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 10.8 12.6
 8.9
 -0.4
 13.1
 17.8
 9.6
8.2
 2.0
0.5
 0.9
0.7
 6.7
6.1
 2.9
 5.7
 6.7
 4.5
 14.4
13 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 10.5 9.5
 11.6
 1.4
0.5
 12.7
9.8
 11.5
9.3
 9.0
8.0
 2.5
2.4
 1.8
1.7
 7.9
5.8
 4.0
 9.1
 12.7
 5.2
 9.3
14 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 10.3 7.0
 13.6
 1.6
 17.2
 10.6
 10.9
9.2
 2.1
2.0
 1.4
1.4
 10.4
 4.2
3.7
 12.9
6.7
 12.1
10.7
 3.4
3.3
 8.8
7.0
15 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 10.0 12.5
 7.5
 0.6
 14.0
 16.9
 11.5
11.3
 1.8
1.6
 1.8
0.9
 8.5
7.0
 3.1
1.7
 8.8
7.2
 11.8
10.1
 3.3
 11.5
16 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 9.9 8.2
 11.6
 1.5
 12.4
 10.3
 7.3
7.2
 3.0
2.4
 2.1
1.9
 7.7
 4.0
3.4
 6.4
5.0
 8.1
6.5
 4.9
 9.0
17 LOC4329783 photosystem II 5 kDa protein, chloroplastic 4329783 Os02g0581100 9.8 6.2
 13.4
 1.8
 11.2
 7.9
 6.7
5.5
 3.9
3.8
 3.3
2.5
 0.9
 3.5
3.0
 6.7
3.0
 6.6
4.4
 3.4
3.0
 4.5
4.4
18 LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic 4343709 Os07g0577600 9.8 13.3
 6.2
 1.2
 16.8
 11.2
 12.8
11.7
 2.3
2.0
 1.7
1.6
 9.7
 4.6
3.2
 8.5
7.0
 10.2
7.8
 3.0
 5.4
19 LOC4340704 protein CURVATURE THYLAKOID 1A, chloroplastic 4340704 Os06g0264800 9.7 6.2
 13.2
 2.0
 8.2
 4.9
 8.2
7.1
 1.5
0.8
 2.2
1.1
 7.1
2.3
 4.5
4.4
 5.2
4.2
 7.4
2.7
 2.2
 3.8
20 LOC4347395 photosystem I reaction center subunit V, chloroplastic 4347395 Os09g0481200 9.5 7.2
 11.9
 0.3
 12.3
 8.7
 12.6
7.2
 2.3
1.0
 2.8
1.8
 7.6
 3.7
3.1
 8.0
6.7
 10.7
7.3
 6.2
 11.4
21 LOC4343070 photosystem I reaction center subunit IV, chloroplastic 4343070 Os07g0435300 9.5 5.5
 13.5
 0.9
0.2
 15.2
14.4
 11.6
9.1
 9.5
9.0
 2.5
2.3
 2.6
2.2
 6.8
6.4
 3.6
 11.3
 10.6
 3.3
3.2
 6.4
5.7
22 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 9.2 7.6
 10.8
 1.6
 10.6
 8.8
 7.7
7.3
 2.8
2.6
 2.8
2.7
 5.4
 2.5
2.1
 7.7
6.5
 10.8
8.0
 4.2
2.4
 7.5
2.7
23 LOC4343515 oxygen-evolving enhancer protein 3, chloroplastic-like 4343515 OSNPB_070544800 8.9 8.0
 9.7
 3.2
0.3
 13.1
9.8
 12.4
7.3
 6.9
6.6
 2.6
2.3
 2.4
2.2
 9.8
 2.8
2.7
 10.1
8.6
 11.1
9.7
 3.0
 4.7
24 LOC4339833 plastocyanin, chloroplastic-like 4339833 OSNPB_060101600 8.4 7.3
 9.6
 2.7
0.2
 10.7
7.4
 11.1
6.9
 7.2
6.9
 2.1
0.9
 2.4
1.7
 7.9
 5.4
3.4
 6.8
5.9
 10.3
6.9
 7.4
 6.7
25 LOC4349004 protochlorophyllide reductase B, chloroplastic-like 4349004 OSNPB_100496900 8.1 7.8
 8.5
 1.2
-0.8
 5.5
4.4
 5.8
3.5
 8.5
5.2
 0.7
0.4
 1.6
0.7
 7.8
5.6
 3.3
2.7
 8.6
5.4
 10.0
7.1
 2.7
 4.3
26 LOC4348209 uncharacterized LOC4348209 4348209 Os10g0181600 8.1 8.0
 8.2


8.3
3.4
 2.3
0.7
 2.3
-0.4
 5.2
 -0.7
 2.0
 0.9
 4.3
 5.3
27 LOC4331915 probable protein phosphatase 2C BIPP2C1 4331915 OSNPB_030192500 8.1 0.7
 15.5
 2.6
 0.8
 -0.8
 3.7
 2.1
 0.3
 2.7
0.3


0.1
 0.4
28 LOC4336044 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 4336044 Os04g0459500 8.1 6.9
 9.3
 4.0
2.6
 7.7
7.4
 5.6
3.7
 5.1
4.7
 3.4
2.6
 2.8
2.5
 6.4
3.2
 5.0
 2.8
 4.9
 13.2
 6.3
29 LOC4324705 chlorophyll a-b binding protein of LHCII type 1 4324705 Os01g0720500 8.0 7.6
 8.3
 0.5
-0.1
 12.7
10.1
 13.9
13.9
 12.2
11.6
 2.3
1.5
 1.7
1.6
 9.4
7.7
 3.7
3.1
 10.6
8.5
 13.7
13.1
 4.2
3.2
 10.9
5.6
30 LOC4344899 photosystem II 10 kDa polypeptide, chloroplastic 4344899 Os08g0200300 7.7 6.6
 8.9
 1.6
 12.1
 7.9
 8.5
7.2
 2.7
1.7
 1.6
1.3
 6.2
0.1
 3.0
2.5
 2.7
2.6
 1.9
1.6
 4.9
 7.0
31 LOC4330625 protein CURVATURE THYLAKOID 1A, chloroplastic 4330625 Os02g0731600 7.7 6.3
 9.1
 2.0
 8.2
 4.9
 8.2
7.1
 1.5
0.8
 2.2
1.1
 7.1
2.3
 4.5
4.4
 5.2
4.2
 7.4
2.7
 2.2
 3.8
32 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 7.7 7.6
 7.7
 1.0
 6.9
 7.2
 4.5
4.5
 2.4
0.8
 2.4
0.9
 3.6
 2.4
 2.4
 4.4
 2.8
 5.0
33 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 7.7 7.0
 8.3
 2.0
 9.7
 6.9
 6.9
6.6
 2.5
1.9
 2.5
2.2
 4.6
 3.1
3.1
 8.0
2.7
 11.1
3.3
 2.8
 2.6
34 LOC4330608 calcium sensing receptor, chloroplastic 4330608 Os02g0729400 7.6 7.9
 7.4
 2.4
 4.3
 5.7
 2.1
-0.2
 3.5
3.3
 2.2
1.5
 4.6
 1.5
 1.4
 1.8
 3.2
1.8
 4.6
2.1
35 LOC4346803 chlorophyll a-b binding protein 1, chloroplastic-like 4346803 OSNPB_090346500 7.4 10.7
0.5
-0.1
 12.7
10.1
 13.9
13.9
 12.2
11.6
 2.3
1.5
 1.7
1.6
 9.4
7.7
 3.7
3.1
 10.6
8.5
 13.7
13.1
 4.2
3.2
 10.9
5.6
36 LOC4344439 ferredoxin-1, chloroplastic-like 4344439 OSNPB_080104600 7.4 5.0
 9.8
 3.6
2.6
 6.2
1.5
 3.1
0.8
 3.5
2.7
 4.3
4.2
 3.5
3.2
 6.8
1.8
 3.5
2.1
 3.0
2.2
 5.2
4.6
 6.1
4.6
 5.7
4.9
37 LOC4330408 pentatricopeptide repeat-containing protein At1g31920 4330408 Os02g0697500 7.0 8.1
 6.0


3.7
3.5
 1.4
0.7
 1.5
0.9
 4.4
 1.4
 3.4
 3.7
 3.7
 6.0
38 LOC4326901 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic 4326901 Os01g0279100 7.0 7.2
 6.8
 0.6
 9.6
 11.4
 7.0
6.0
 1.3
0.9
 1.0
-0.0
 9.2
 3.1
 6.9
 7.5
 4.2
 10.1
39 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 7.0 5.3
 8.7
 -0.7
 8.0
 9.4
 5.9
5.6
 0.1
0.1
 0.2
-0.2
 5.4
 1.6
 3.8
 2.4
 3.3
 5.8
40 LOC4330413 phosphoribulokinase, chloroplastic 4330413 Os02g0698000 6.9 4.3
 9.5
 3.4
 4.7
 3.6
 5.0
2.6
 2.9
2.4
 2.1
2.0
 5.3
 4.1
3.8
 4.0
0.6
 4.1
2.5
 10.1
 4.8
41 LOC4330711 geranylgeranyl diphosphate reductase, chloroplastic-like 4330711 OSNPB_020744900 6.5 5.2
 7.9
 0.4
 8.6
 9.7
 6.5
5.9
 2.5
2.0
 2.1
1.9
 8.1
1.4
 1.9
1.6
 5.8
4.2
 10.0
7.3
 1.0
0.5
 2.9
0.5
42 LOC4333882 zinc finger protein CONSTANS-LIKE 16 4333882 Os03g0711100 6.4 6.8
 6.0











43 LOC9266204 nuclear transcription factor Y subunit C-2-like 9266204 OSNPB_030251350 6.4 6.1
 6.7
 1.3
1.2
 1.3
0.7
 1.8
1.1
 1.2
0.9
 1.7
0.4
 1.0
0.1
 3.2
1.2
 0.8
0.6
 2.4
1.6
 1.8
1.4
 3.5
0.2
 2.3
0.6
44 LOC4352085 photosystem I reaction center subunit XI, chloroplastic 4352085 Os12g0420400 6.4 8.8
 3.9
 0.8
 16.3
 11.8
 10.4
8.0
 1.8
0.8
 2.4
1.9
 10.5
9.3
 3.6
2.8
 8.8
2.9
 9.9
2.4
 5.0
 6.4
45 LOC4346326 photosystem I reaction center subunit II, chloroplastic 4346326 Os08g0560900 6.3 8.9
0.9
0.9
 13.0
9.7
 15.9
11.7
 11.6
10.3
 3.1
3.0
 3.0
2.4
 9.6
 5.2
3.8
 12.9
8.5
 10.9
8.5
 7.0
 12.0
46 LOC4352021 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4352021 Os12g0292400 6.3 3.7
 8.9
 4.2
4.1
 6.4
4.6
 3.0
2.0
 3.9
3.8
 2.7
2.0
 4.3
3.7
 6.1
4.6
 4.5
4.1
 3.2
1.7
 5.2
5.0
 6.5
6.4
 3.3
3.2
47 LOC4352606 uncharacterized LOC4352606 4352606 Os12g0575000 6.3 5.6
 7.0
 2.2
 3.9
 2.0
 3.4
3.0
 1.0
0.9
 2.7
0.5
 4.2
 1.9
 2.0
 2.9
 5.2
 3.2
48 LOC4331128 uncharacterized LOC4331128 4331128 Os02g0815300 6.1 4.9
 7.3


3.3
2.2
 2.3
1.8
 1.8
1.6
 3.7
 2.3
 2.2
 3.1
 1.4
 0.9
49 LOC9269218 uncharacterized LOC9269218 9269218 Os07g0673550 5.9 7.9
1.7
 12.3
 9.4
 11.1
9.9
 3.9
3.3
 3.0
3.0
 6.8
6.2
 4.3
3.7
 7.4
6.7
 10.7
7.7
 3.4
2.9
 4.2
3.6
50 LOC4339270 photosystem II reaction center W protein, chloroplastic-like 4339270 Os05g0508900 5.8 4.7
 6.8
 1.5
 12.9
 10.1
 11.4
10.4
 3.3
2.1
 3.1
2.2
 8.5
5.5
 3.6
3.6
 9.7
5.7
 8.5
6.6
 3.8
2.7
 4.8
2.1
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