Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4345044   RNA polymerase sigma factor sigF, chloroplastic 
 osa-r.5   4345044   RNA polymerase sigma factor sigF, chloroplastic 
 osa-m.8   4345044   RNA polymerase sigma factor sigF, chloroplastic 
 ath-u.4   SIGF   RNApolymerase sigma-subunit F 
 gma-u.4   100793539   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.4   100782822   RNA polymerase sigma factor sigF, chloroplastic-like 
 gma-u.4   100306289   RNA polymerase sigma factor sigF, chloroplastic 
 sly-u.4   101267154   RNA polymerase sigma factor sigF, chloroplastic 
 ppo-u.4   18100169   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.4   11432370   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.4   11434136   RNA polymerase sigma factor sigF, chloroplastic 

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Top 50 coexpressed genes to 4345044 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  9 76 13.31
 osa860   Porphyrin metabolism  3 42 4.02
 osa906   Carotenoid biosynthesis  2 30 2.74
 osa130   Ubiquinone and other terpenoid-quinone biosynthesis  1 46 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4345044 (RNA polymerase sigma factor sigF, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4345044
osa-r.5
for
4345044
osa-m.8
for
4345044
ath-u.4
for
SIGF
gma-u.4
for
100793539
gma-u.4
for
100782822
gma-u.4
for
100306289
sly-u.4
for
101267154
ppo-u.4
for
18100169
mtr-u.4
for
11432370
mtr-u.4
for
11434136
1 LOC9266204 nuclear transcription factor Y subunit C-2-like 9266204 OSNPB_030251350 5.9 5.1
 6.7
 0.1
-0.1
 0.2
0.0
 0.4
-0.0
 -0.8
-1.1
 1.4
0.4
 1.8
0.8
 1.3
0.2
 3.2
-1.3
2 LOC4349004 protochlorophyllide reductase B, chloroplastic-like 4349004 OSNPB_100496900 5.7 5.5
 5.8
 3.1
2.0
 0.7
0.3
 1.1
-0.7
 1.2
-0.1
 3.6
1.4
 1.5
0.6
 2.2
 2.0
3 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 5.2 5.1
 5.4
 0.6
 -1.4
-1.5
 0.2
-0.3
 -0.0
-0.4
 -0.6
 1.4
1.1
 -0.7
 0.8
4 LOC4330626 zinc finger protein CONSTANS-LIKE 16 4330626 Os02g0731700 5.2 4.1
 6.3
 2.3
1.5
 1.3
0.8
 1.4
1.0
 2.4
1.9
 2.2
0.6
 0.6
0.4
 1.5
1.4
 2.9
0.9
5 LOC4324196 lycopene epsilon cyclase, chloroplastic 4324196 Os01g0581300 5.0 3.6
 6.5
 4.1
 1.6
1.3
 1.0
0.5
 2.4
1.3
2.1
 0.2
 3.7
6 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 5.0 5.4
 4.5
 1.2
0.8
 0.3
-0.3
 1.0
0.7
 1.1
0.7
 1.1
 1.1
1.0
 0.2
-0.4
 3.6
2.4
7 LOC4349652 uncharacterized LOC4349652 4349652 Os11g0127800 4.9 4.1
 5.7
 2.1
 0.6
 1.9
 2.3
 1.3
 1.2
0.6
 1.7
 2.0
8 LOC4326901 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic 4326901 Os01g0279100 4.8 4.6
 5.1
 2.6
 -0.1
-0.6
 -0.0
-0.3
 0.2
-0.2
 2.1
 1.3
 -1.0
 -0.6
9 LOC4332887 transcription termination factor MTEF1, chloroplastic 4332887 Os03g0360600 4.8 3.1
 6.5
 4.4
 1.1
0.8
 0.6
0.5
 1.7
1.2
 2.7
 0.3
 2.1
 2.0
10 LOC4329191 RHOMBOID-like protein 9, chloroplastic 4329191 Os02g0326700 4.7 3.4
 6.0
 3.6
 0.3
-0.2
 0.7
-0.1
 0.2
-0.2
 0.6
 1.5
 0.3
 -0.0
11 LOC4333999 uncharacterized LOC4333999 4333999 Os03g0731100 4.6 5.6
 3.7
 3.7
 1.3
 1.1
 3.3
 -0.0
 0.3
 1.1
0.8
 2.0
1.1
12 LOC4331128 uncharacterized LOC4331128 4331128 Os02g0815300 4.5 4.0
 5.1
0.4
0.2
 1.6
1.2
 2.9
1.2
 1.2
 0.5
 -0.7
 0.8
13 LOC4347659 rhodanese-like domain-containing protein 14, chloroplastic 4347659 Os09g0530000 4.5 3.0
 6.0
 1.8
 2.1
0.1
 1.1
-1.0
 0.9
0.4
 2.2
 3.2
1.3

14 LOC4344738 RNA polymerase sigma factor sigA 4344738 Os08g0163400 4.4 2.8
 6.0
 4.2
 1.6
0.5
 1.3
0.7
 1.2
1.1
 2.1
1.4
 2.2
1.7
 0.7
 1.8
15 LOC4331514 probable signal recognition particle 43 kDa protein, chloroplastic 4331514 OSNPB_030131900 4.4 3.1
 5.7
 3.6
 0.0
 0.3
 1.4
 3.6
 1.3
-0.5
 1.6
 2.9
16 LOC4331129 uncharacterized LOC4331129 4331129 Os02g0815400 4.4 3.4
 5.3
 -0.7
 1.2
 2.5
 2.8
 1.3
 2.9
 0.0
 1.6
17 LOC4340698 zinc finger protein CONSTANS-LIKE 16 4340698 Os06g0264200 4.4 3.9
 4.9
 2.3
1.5
 1.3
0.8
 1.4
1.0
 2.4
1.9
 2.2
0.6
 0.6
0.4
 1.5
1.4
 2.9
0.9
18 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 4.4 4.5
 4.2
 0.9
 0.0
-0.5
 1.3
1.1
 1.3
1.1
 2.4
 0.7
0.6
 1.1
0.2
 1.0
0.4
19 LOC4339017 probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 4339017 OSNPB_050460600 4.4 4.1
 4.6
 3.8
 -0.9
 1.7
 2.1
 2.4
 0.6
 0.0
 2.9
20 LOC4348209 uncharacterized LOC4348209 4348209 Os10g0181600 4.3 3.8
 4.8
1.9
1.4
 2.3
0.4
 3.6
0.7
 2.2
 0.7
 1.0
 2.2
21 LOC4334497 protochlorophyllide-dependent translocon component 52, chloroplastic 4334497 Os03g0805600 4.3 4.3
 4.3
 0.6
 1.5
0.9
 1.4
0.3
 1.0
1.0
 0.5
 1.9
1.0
 1.6
0.8
 3.3
0.6
22 LOC4330413 phosphoribulokinase, chloroplastic 4330413 Os02g0698000 4.3 3.3
 5.2
 3.3
 -0.3
-1.4
 1.0
0.7
 1.6
1.0
 1.6
 1.7
0.0
 0.1
 -0.1
23 LOC4347395 photosystem I reaction center subunit V, chloroplastic 4347395 Os09g0481200 4.3 3.2
 5.3
 -0.0
 -0.1
-0.2
 1.7
1.3
 1.3
1.0
 0.5
 0.8
0.3
 -0.2
 0.0
24 LOC4340162 uncharacterized LOC4340162 4340162 Os06g0152800 4.2 4.3
 4.1







25 LOC4326948 beta-glucosidase 5-like 4326948 OSNPB_010930800 4.2 3.8
 4.6
 1.6
1.6
 -0.2
-0.2
 0.8
-0.0
 0.6
-0.7
 2.0
0.1
0.6
0.4
 1.3
1.0
26 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 4.2 4.5
 3.9
 3.9
 1.7
 2.3
 3.2
 2.6
 1.8
 2.2
 1.9
27 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 4.2 4.0
 4.4







28 LOC4342509 uncharacterized LOC4342509 4342509 Os07g0170200 4.2 4.1
 4.3
 -0.7
 2.8
2.2
 0.2
-0.2
 1.6
0.6
2.6
0.2
 2.5
 1.3
29 LOC4331999 BTB/POZ domain-containing protein SR1IP1 4331999 Os03g0206700 4.2 4.3
 4.0
 2.9
 0.4
0.1
 0.7
-0.0
 0.7
-0.0
 2.5
-0.5
 2.1
 1.1
0.9
 1.1
0.2
30 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 4.1 2.9
 5.3
 1.5
 -0.1
-0.7
 2.4
1.6
 2.6
1.2
 3.3
 2.3
1.5
 1.2
-0.2
 2.0
1.5
31 wsl5 white stripe leaf5 4337454 Os04g0684500 4.1 4.1
 4.1
 7.6
 3.1
1.4
 2.8
2.0
 4.0
2.8
 4.1
2.6
 2.7
2.5
 2.8
 1.1
32 LOC4325097 uncharacterized LOC4325097 4325097 Os01g0896500 4.1 4.5
 3.6
 3.1
 1.6
0.6
 1.4
1.4
 4.1
2.1
 2.5
 1.8
 0.9
 0.8
33 LOC4337691 uncharacterized LOC4337691 4337691 Os05g0128100 4.1 5.0
 3.1
 1.6
 2.5
1.2
 2.2
1.5
 1.7
1.6
0.2
 2.6
 2.6
34 LOC4339270 photosystem II reaction center W protein, chloroplastic-like 4339270 Os05g0508900 4.0 3.0
 5.1
 0.4
 -0.0
-0.4
 0.9
0.6
 1.4
1.0
 1.7
-0.0
 0.8
0.8
 0.1
-0.1
 1.9
0.4
35 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 4.0 3.5
 4.5
 2.9
 -0.2
-0.4
 0.9
0.8
 1.4
0.3
 2.1
 0.7
 0.1
 0.0
36 LOC4329844 inorganic phosphate transporter 2-1, chloroplastic 4329844 Os02g0593500 4.0 2.4
 5.7
 2.4
 1.8
0.8
 2.1
0.9
 1.6
-0.1
 1.2
 1.9
-0.6
 0.4
 0.1
37 LOC4327790 probable 2-carboxy-D-arabinitol-1-phosphatase 4327790 Os01g0237100 4.0 4.5
 3.6
1.8
1.2
 1.6
1.1
 3.5
3.0
 0.6
 1.4
 2.1
 4.8
38 LOC4335625 violaxanthin de-epoxidase, chloroplastic 4335625 Os04g0379700 4.0 4.2
 3.8
 4.4
 1.3
0.8
 3.1
2.0
 4.2
2.9
 3.2
 1.1
 2.8
 3.6
39 LOC4330408 pentatricopeptide repeat-containing protein At1g31920 4330408 Os02g0697500 4.0 2.8
 5.1
0.1
-0.3
 1.6
0.3
 1.4
0.5
 0.2
 2.0
 -1.6
 4.0
40 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 4.0 3.7
 4.2
 0.6
 0.1
 1.0
 1.3
 1.6
1.1
 0.4
 0.0
 1.9
41 LOC4340977 probable transcription factor GLK1 4340977 OSNPB_060348800 3.9 3.8
 4.1
 -0.3
-0.8
 0.7
0.2
 0.1
0.0
 0.8
-0.0
 0.4
-0.0
 0.7
0.2
 -0.4
-0.8
 0.2
0.0
42 LOC4324318 uncharacterized LOC4324318 4324318 Os01g0912700 3.9 3.2
 4.6
 2.0
 1.1
0.8
 1.7
1.2
 1.9
1.3
 2.7
 2.1
 2.2
 2.5
43 LOC9268489 isochorismate synthase 1, chloroplastic 9268489 Os09g0361500 3.9 3.0
 4.7
 0.1
-0.2
 0.7
-0.2
 2.2
0.4
 2.0
0.8
 0.7
 1.9
 1.6
 5.6
44 LOC4344899 photosystem II 10 kDa polypeptide, chloroplastic 4344899 Os08g0200300 3.8 4.3
 3.4
 0.4
 -0.1
-0.6
 0.0
-0.5
 -0.1
-0.3
 0.5
-0.3
 1.6
0.3
 -0.7
 0.7
45 LOC4352606 uncharacterized LOC4352606 4352606 Os12g0575000 3.8 3.5
 4.1
 2.7
 0.2
-0.0
 1.1
0.8
 1.3
0.9
 0.1
 1.4
 -0.4
 3.1
46 LOC4328000 ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like 4328000 Os02g0103800 3.8 3.9
 3.6
 2.6
1.3
 1.9
1.2
 2.4
2.1
 2.7
2.6
 3.2
1.4
 1.3
0.8
 2.3
 0.4
47 LOC4328487 calmodulin-binding protein 60 C 4328487 Os02g0177800 3.7 4.1
 3.4
 1.0
0.7
 0.7
0.0
 -0.1
-0.4
 -0.1
-0.3
 0.3
0.0
 0.8
-0.2
 0.7
-0.5
 0.3
0.0
48 LOC4330995 translation initiation factor IF3-4, chloroplastic 4330995 Os02g0794400 3.7 4.5
 2.9
 6.2
1.3
 2.3
1.9
 3.5
3.0
 5.8
5.7
 5.1
 2.0
 4.6
 4.5
49 LOC4344752 protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 4344752 Os08g0167500 3.7 3.1
 4.3
 3.4
 -0.3
-0.5
 2.2
2.1
 2.7
2.5
 1.2
 -0.1
 1.3
 2.0
50 LOC4336446 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic 4336446 Os04g0525000 3.7 3.7
 3.7
 2.5
 1.4
 2.6
 3.6
 1.7
 1.3
 2.5
 4.0
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