Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4346326   photosystem I reaction center subunit II, chloroplastic 
 osa-r.5   4346326   photosystem I reaction center subunit II, chloroplastic 
 ath-u.4   PSAD-2   photosystem I subunit D-2 
 ath-u.4   PSAD-1   photosystem I subunit D-1 
 gma-u.4   PSAD   photosystem I subunit PsaD 
 gma-u.4   100800992   photosystem I reaction center subunit II, chloroplastic 
 sly-u.4   543978   photosystem I reaction center subunit II, chloroplastic 
 ppo-u.4   7474216   photosystem I reaction center subunit II, chloroplastic 
 ppo-u.4   7467482   photosystem I reaction center subunit II, chloroplastic 
 mtr-u.4   11438662   photosystem I reaction center subunit II, chloroplastic 

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Top 50 coexpressed genes to 4346326 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  19 75 35.14
 osa196   Photosynthesis - antenna proteins  12 15 30.09
 osa860   Porphyrin metabolism  3 42 4.02
 osa710   Carbon fixation in photosynthetic organisms  3 72 3.33
 osa190   Oxidative phosphorylation  3 140 2.49

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osa:LOC4346326 (photosystem I reaction center subunit II, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4346326
osa-r.5
for
4346326
ath-u.4
for
PSAD-2
ath-u.4
for
PSAD-1
gma-u.4
for
PSAD
gma-u.4
for
100800992
sly-u.4
for
543978
ppo-u.4
for
7474216
ppo-u.4
for
7467482
mtr-u.4
for
11438662
1 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 8.3 12.2
 11.5
 18.0
 15.2
 20.9
 10.2
9.6
 9.3
 10.2
 8.4
2 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 7.5 10.6
 11.1
 13.6
 8.6
6.1
 11.7
6.2
 7.5
5.1
 7.6
0.5
 9.7
1.3
 6.4
3 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 7.0 9.9
 11.9
 16.9
 11.1
7.1
 11.1
5.7
 9.7
 5.7
2.5
 6.2
4.4
 5.9
4 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 6.5 9.0
 10.8
 12.5
 10.9
9.5
 10.3
8.8
 6.3
4.0
 5.4
 7.0
 5.7
5 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 6.4 9.2
 8.3
7.6
 14.5
9.0
 11.5
10.2
 10.2
9.1
 11.4
 12.7
9.1
 12.9
12.0
 6.5
4.0
6 LOC4343583 chlorophyll a-b binding protein CP29.1, chloroplastic 4343583 Os07g0558400 6.3 8.9
 15.9
9.7
 13.0
11.7
 11.6
9.9
 11.9
10.3
 9.6
 8.5
8.5
 12.9
10.9
 12.0
7.0
7 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 6.2 9.3
 12.1
 14.3
 8.7
7.7
 10.4
7.7
 5.4
4.9
 5.7
 6.0
 8.7
8 LOC4342404 photosystem I reaction center subunit psaK, chloroplastic 4342404 Os07g0148900 6.1 8.6
 9.1
 14.4
 10.9
7.8
 10.2
6.3
 10.0
 7.5
4.7
 8.3
4.0
 6.2
9 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 5.8 8.2
 9.7
 17.9
 10.5
10.0
 10.9
7.7
 10.9
 8.7
8.1
 13.9
9.0
 7.8
6.0
10 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 5.8 7.9
 11.5
10.9
 10.2
10.0
 8.5
7.5
 10.1
9.0
 6.5
5.7
 8.5
8.1
 9.4
9.1
 6.9
4.3
11 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 5.8 8.2
 14.3
9.4
 15.0
12.8
 8.7
8.1
 10.1
8.5
 9.5
5.9
 9.1
 13.5
 9.6
12 LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic 4350176 Os11g0242800 5.7 7.8
 9.9
 13.5
 7.6
7.6
 10.3
7.5
 9.7
 5.8
5.0
 7.7
5.6
 4.7
13 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 5.6 8.1
 9.5
 7.8
 4.2
3.7
 6.5
4.4
 8.8
 3.6
 2.9
 6.3
14 LOC4352085 photosystem I reaction center subunit XI, chloroplastic 4352085 Os12g0420400 5.5 8.7
 10.0
 16.5
 16.5
11.3
 15.4
8.3
 12.5
11.0
 11.3
2.5
 12.1
3.2
 6.2
15 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 5.4 7.6
 11.5
10.9
 10.2
10.0
 8.5
7.5
 10.1
9.0
 6.5
5.7
 8.5
8.1
 9.4
9.1
 6.9
4.3
16 LOC4339833 plastocyanin, chloroplastic-like 4339833 OSNPB_060101600 5.3 8.4
 12.1
6.7
 13.2
10.2
 10.0
7.9
 10.6
9.4
 7.0
 6.8
6.5
 7.8
6.8
 9.6
17 LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic 4343709 Os07g0577600 5.3 8.2
 9.6
 12.6
 12.5
9.3
 11.2
10.6
 9.9
 6.9
6.1
 8.1
7.4
 5.4
18 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 5.3 7.9
 13.1
 16.4
 9.8
9.6
 11.7
9.2
 7.2
6.2
 8.3
7.1
 7.8
7.5
 7.2
19 LOC4346803 chlorophyll a-b binding protein 1, chloroplastic-like 4346803 OSNPB_090346500 5.2 7.8
 11.5
10.9
 10.2
10.0
 8.5
7.5
 10.1
9.0
 6.5
5.7
 8.5
8.1
 9.4
9.1
 6.9
4.3
20 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 5.2 7.3
 8.8
 10.9
 7.6
7.3
 7.1
6.8
 7.2
 7.6
6.1
 10.3
6.3
 8.6
21 LOC4324705 chlorophyll a-b binding protein of LHCII type 1 4324705 Os01g0720500 5.2 7.7
 11.5
10.9
 10.2
10.0
 8.5
7.5
 10.1
9.0
 6.5
5.7
 8.5
8.1
 9.4
9.1
 6.9
4.3
22 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 5.1 6.8
 10.4
 15.9
 12.7
11.8
 13.2
10.4
 10.0
4.3
 8.9
 7.9
 8.7
23 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 5.0 6.9
 5.7
 7.5
 4.9
4.5
 6.3
5.4
 3.0
 2.2
 2.1
 3.6
24 LOC4330608 calcium sensing receptor, chloroplastic 4330608 Os02g0729400 5.0 7.2
 3.9
 4.5
 3.1
1.5
 5.2
1.3
 3.7
 0.8
 1.8
 5.8
1.6
25 LOC4348209 uncharacterized LOC4348209 4348209 Os10g0181600 5.0 7.0

4.0
3.8
 5.0
4.0
 4.2
 0.5
 1.6
 4.1
26 LOC4343515 oxygen-evolving enhancer protein 3, chloroplastic-like 4343515 OSNPB_070544800 5.0 6.7
 10.2
7.4
 14.5
12.0
 8.8
5.7
 7.8
7.1
 14.0
 8.8
6.9
 8.9
8.5
 4.9
27 LOC4343070 photosystem I reaction center subunit IV, chloroplastic 4343070 Os07g0435300 4.9 6.4
 10.6
7.1
 15.1
10.7
 11.3
10.8
 11.9
9.1
 12.2
7.9
 10.0
 13.1
 7.2
4.1
28 LOC9270776 ATP synthase delta chain, chloroplastic 9270776 Os02g0750100 4.9 7.2
 6.5
 9.4
 9.5
7.1
 11.6
7.7
 7.9
 5.1
1.6
 6.2
1.4
 5.4
29 LOC4330625 protein CURVATURE THYLAKOID 1A, chloroplastic 4330625 Os02g0731600 4.8 6.6
 3.6
 8.0
 9.0
8.0
 9.7
7.4
 8.7
3.5
 5.9
4.0
 5.8
4.7
 2.5
30 LOC4343366 ATP synthase subunit gamma, chloroplastic 4343366 Os07g0513000 4.8 7.0
 5.1
 10.4
 6.2
4.2
 7.3
4.0
 8.4
 5.4
3.4
 5.9
3.3
 2.5
31 LOC4324933 photosystem II 22 kDa protein, chloroplastic 4324933 Os01g0869800 4.7 6.9
 3.3
 7.4
 2.6
 3.8
 4.0
 2.9
 1.9
 9.0
32 LOC4338302 protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic 4338302 Os05g0291700 4.6 7.3
 9.0
 9.4
 6.0
5.6
 6.6
5.4
 7.0
 8.2
3.6
 6.3
3.6
 3.1
33 LOC9269218 uncharacterized LOC9269218 9269218 Os07g0673550 4.5 6.6
 8.4
 14.1
 14.5
9.4
 11.7
9.6
 10.9
7.7
 8.5
5.7
 9.5
7.3
 4.5
4.5
34 LOC4336044 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 4336044 Os04g0459500 4.5 6.3
 5.9
2.9
 8.0
5.2
 7.5
7.2
 8.3
6.9
 8.0
4.3
 2.9
 4.1
 8.6
35 LOC4344899 photosystem II 10 kDa polypeptide, chloroplastic 4344899 Os08g0200300 4.5 6.6
 5.5
 10.4
 7.7
5.7
 5.3
4.0
 5.2
0.6
 4.4
2.0
 3.8
3.2
 5.7
36 LOC4330413 phosphoribulokinase, chloroplastic 4330413 Os02g0698000 4.5 6.2
 5.3
 5.9
 5.9
3.9
 6.2
3.7
 6.0
 4.2
1.4
 5.9
2.1
 8.0
37 LOC4331129 uncharacterized LOC4331129 4331129 Os02g0815400 4.5 6.4
 2.3
 2.8
 3.1
 2.4
 2.2
 0.6
 0.6
 0.7
38 LOC4347395 photosystem I reaction center subunit V, chloroplastic 4347395 Os09g0481200 4.5 6.0
 8.4
 14.5
 12.5
7.9
 15.8
6.7
 9.8
 8.9
6.5
 8.4
7.5
 14.0
39 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 4.3 5.4
 11.1
 17.8
 11.2
6.8
 14.2
9.4
 9.9
 9.7
5.9
 10.6
10.6
 8.2
3.8
40 LOC4329783 photosystem II 5 kDa protein, chloroplastic 4329783 Os02g0581100 4.1 5.3
 9.1
 13.6
 6.1
5.7
 7.3
5.7
 1.7
 6.5
3.3
 8.0
3.9
 5.3
4.3
41 LOC4334225 uncharacterized LOC4334225 4334225 Os03g0765900 4.1 5.8
 2.5
 5.2
 10.1
6.4
 10.4
7.8
 5.8
5.3
 4.6
2.7
 6.8
2.8
 3.0
42 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 4.0 5.4
 7.3
 8.1
 7.6
7.4
 8.7
7.0
 6.8
 6.5
4.3
 8.0
3.4
 3.7
43 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 4.0 5.2







44 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 4.0 5.4
 8.1
 12.0
 11.6
7.2
 11.7
6.5
 8.0
 4.5
1.3
 5.3
2.0
 6.1
45 LOC4332843 divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic 4332843 OSNPB_030351200 4.0 5.5
 1.2
 2.1
 2.6
1.8
 3.4
2.2
 3.6
 2.9
 4.5
 1.0
46 LOC4326901 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic 4326901 Os01g0279100 3.9 5.6
 8.8
 11.7
 7.0
6.7
 10.1
6.7
 6.9
 5.0
 7.1
 7.6
47 LOC4351966 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4351966 OSNPB_120274700 3.9 5.9
 3.5
3.3
 6.7
4.8
 5.6
4.7
 5.1
4.0
 5.4
3.9
 4.0
2.3
 5.1
4.0
 3.8
3.4
48 LOC4332431 ATP synthase subunit b', chloroplastic 4332431 Os03g0278900 3.9 5.4
 4.0
 5.7
 6.4
 5.7
 4.8
4.0
 2.3
2.1
 3.3
2.2
 1.6
49 LOC4343189 protein CURVATURE THYLAKOID 1B, chloroplastic 4343189 Os07g0469100 3.9 5.3
 6.8
 10.1
 5.6
5.3
 6.9
4.6
 6.7
 7.7
3.3
 6.5
3.1
 5.8
0.6
50 LOC4327654 uncharacterized LOC4327654 4327654 Os01g0585300 3.8 5.4
 3.6
 5.7
 6.6
6.1
 5.2
4.7
 7.6
 6.0
3.2
 5.3
4.3
 2.0
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