Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4346878   homeobox protein Hox-D9 
 osa-r.5   4346878   homeobox protein Hox-D9 
 osa-m.8   4346878   homeobox protein Hox-D9 
 osa-u.4   4345537   uncharacterized LOC4345537 
 osa-u.4   4340530   uncharacterized LOC4340530 
 ath-u.4   AT4G39795   hypothetical protein (DUF581) 
 ath-u.4   AT5G65040   senescence-associated family protein (DUF581) 
 ath-u.4   AT1G78020   senescence-associated family protein, putative (DUF581) 
 gma-u.4   100527853   FCS-like zinc-finger domain-containing protein 
 gma-u.4   100803140   FCS-Like Zinc finger 6 
 gma-u.4   100796944   FCS-like zinc-finger domain-containing protein 
 sly-u.4   101248202   uncharacterized LOC101248202 
 sly-u.4   101250672   protein MARD1-like 
 sly-u.4   101267225   uncharacterized LOC101267225 
 ppo-u.4   7468909   uncharacterized LOC7468909 
 ppo-u.4   112327513   uncharacterized LOC112327513 
 ppo-u.4   7456921   uncharacterized LOC7456921 
 mtr-u.4   25489418   FCS-Like Zinc finger 5 
 mtr-u.4   11416116   FCS-Like Zinc finger 5 

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Top 50 coexpressed genes to 4346878 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa630   Glyoxylate and dicarboxylate metabolism  3 72 3.33
 osa260   Glycine, serine and threonine metabolism  2 64 2.09
 osa100   Steroid biosynthesis  1 40 -
 osa710   Carbon fixation in photosynthetic organisms  2 77 -
 osa1200   Carbon metabolism  3 273 -

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osa:LOC4346878 (homeobox protein Hox-D9) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4346878
osa-r.5
for
4346878
osa-m.8
for
4346878
osa-u.4
for
4345537
osa-u.4
for
4340530
ath-u.4
for
AT4G39795
ath-u.4
for
AT5G65040
ath-u.4
for
AT1G78020
gma-u.4
for
100527853
gma-u.4
for
100803140
gma-u.4
for
100796944
sly-u.4
for
101248202
sly-u.4
for
101250672
sly-u.4
for
101267225
ppo-u.4
for
7468909
ppo-u.4
for
112327513
ppo-u.4
for
7456921
mtr-u.4
for
25489418
mtr-u.4
for
11416116
1 LOC4345537 uncharacterized LOC4345537 4345537 Os08g0407600 8.5 7.6
 9.4
 8.5
3.0
 3.0
2.7
 3.3
2.3
 2.6
2.4
 5.8
2.6
 8.9
2.6
 5.5
5.0
 8.9
6.6
 2.3
0.5
 2.7
1.5
 2.8
1.5
 8.2
4.6
 8.2
2.5
 3.3
1.9
 3.0
 3.0
2 LOC4334822 putative gamma-glutamylcyclotransferase At3g02910 4334822 Os03g0854000 5.7 4.7
 6.6
 3.7
 0.8
 -0.6
 1.0
 -0.2
 0.1
0.1
 1.1
-0.0
 2.0
0.7
 1.5
-0.3
 0.2
-0.6
 0.2
-0.9
 1.8
0.9
 1.2
0.6
 0.8
0.2
 1.2
-0.1
 1.8
-0.9
3 LOC4330172 cyclin-P4-1-like 4330172 Os02g0652000 4.7 4.7
 4.6
 3.9
1.1
 0.8
0.4
 -0.3
 -0.3
 -0.6
 2.2
1.7
 1.8
1.2
 2.5
2.2
 1.5
1.5
 0.1
-0.3
 0.5
0.2
 -0.1
-0.2
 0.2
-0.3
 0.6
0.6
 0.2
-0.3
 -0.7
-1.0
4 LOC4329923 B-box zinc finger protein 25 4329923 Os02g0606200 4.0 4.0
 3.9
 1.8
1.6
 1.5
-0.3
 0.0
-0.3
 -0.1
-0.6
 0.8
0.7
 1.0
-0.0
 2.4
1.8
 0.0
-0.6
 -0.2
 2.0
 1.1
 1.6
0.8
 1.7
0.8
 0.8
-0.3
 1.2
0.1
 1.1
-0.1
5 LOC4350194 ankyrin repeat protein SKIP35 4350194 Os11g0246900 4.0 4.8
 3.2
 3.0
 2.3
 0.1
0.0
 0.1
-1.9
 1.3
0.4
 0.6
0.0
 0.3
-0.9
 0.0
-0.0
 1.0
-0.3
 1.0
0.4
 0.7
0.4
 1.8
-0.7
 1.1
-0.3
 0.2
-0.2
 -0.5
 1.2
6 LOC4345854 homeobox-leucine zipper protein HOX20-like 4345854 OSNPB_080481400 3.9 3.3
 4.6
 3.3
1.8
 1.8
1.1
 1.7
0.9
 0.6
0.2
 2.4
1.0
 2.2
1.5
 5.5
2.7
 3.7
2.9
 2.1
1.8
 1.0
0.1
 1.4
0.4
 2.8
1.5
 1.5
1.5
 0.9
0.9
 4.7
2.4
 2.8
2.3
7 LOC4340183 GDSL esterase/lipase At5g45910 4340183 Os06g0157000 3.9 4.3
 3.4
 1.4
 1.5













8 LOC4333160 membrane-anchored ubiquitin-fold protein 1-like 4333160 OSNPB_030426800 3.7 3.8
 3.6
 1.4
 0.7
 -0.5
-0.9
 0.8
0.5
 1.2
-0.2
 0.4
0.1
 2.1
1.3
 1.2
0.5
 0.7
 0.4
 1.2
 1.0
0.4
 -0.1
-0.1
 0.6
-0.3
 0.5
0.2
 0.0
-1.3
9 LOC4337051 aminomethyltransferase, mitochondrial 4337051 Os04g0623800 3.6 3.8
 3.4
 2.2
 1.9
 0.3
 -0.7
 1.5
 0.8
0.5
 0.4
0.4
 0.8
0.8
 0.1
 -1.6
 -0.3
 -0.1
-0.4
 1.1
0.4
 2.4
-0.7
 0.4
 2.4
10 LOC4342343 amino acid permease 6 4342343 Os07g0134000 3.6 5.6
 1.6
 2.6
 1.1
 1.1
-0.1
 -0.5
-1.5
 -0.5
-0.9
 0.8
0.5
 1.3
0.9
 0.2
-0.1
 1.4
0.3
 0.6
-0.2
 0.5
-0.2
 0.7
 1.0
 -1.4
 0.5
0.2
 2.9
2.4
11 LOC4324489 probable purine permease 4 4324489 Os01g0504100 3.6 4.6
 2.5
 3.0
-0.1
 0.8
0.2
 0.9
 1.2
 -0.1
 1.6
1.4
 0.6
-0.1
 1.1
0.5
 0.1
 0.6
 -0.6
 -1.6
 -1.1
 -0.8

12 LOC4333995 lecithin-cholesterol acyltransferase-like 1 4333995 Os03g0730000 3.6 2.7
 4.5
 2.8
 -0.9
 0.6
 0.0
 2.5
 0.2
 -1.6
 -0.1
 1.2
 -0.2
 0.1
 1.4
 1.8
 -1.5
 -0.3
 0.1
13 LOC4336797 uncharacterized LOC4336797 4336797 Os04g0586200 3.6 3.8
 3.3
 2.5
2.1
 2.7
2.1













14 LOC4341478 uncharacterized LOC4341478 4341478 Os06g0606700 3.5 3.8
 3.2
 3.8
0.0
 3.1
-0.6
 0.9
-0.0
 0.3
-1.1
 1.9
0.7
 1.4
1.3
 4.4
2.7
 2.0
2.0
 1.1
0.8
 0.9
-0.3
 1.5
0.3
 3.0
1.4
 2.3
0.9
 1.8
1.4
 1.0
0.5
 2.1
-0.6
15 LOC4334039 magnesium-dependent phosphatase 1 4334039 Os03g0737400 3.5 2.7
 4.4
 1.6
-0.6
 -0.1
-1.0
 -0.8
 1.1
 -1.0
 1.6
-0.3
 0.7
-0.3
 2.2
1.6
 -0.3
 0.9
 0.8
 -0.3
 0.1
 0.3
 0.4
0.1
 1.8
-0.3
16 LOC4341236 CBL-interacting protein kinase 25-like 4341236 OSNPB_060543400 3.5 2.7
 4.3
 3.4
 0.8













17 LOC4342210 glutamate--glyoxylate aminotransferase 2 4342210 Os07g0108300 3.5 3.6
 3.3
 2.4
 -0.1
 0.4
-0.1
 -0.5
-0.6
 0.7
-0.1
 0.8
0.6
 5.3
2.3
 0.7
-0.6
 -0.3
-0.7
 0.8
-0.1
 0.2
-0.5
 0.5
-0.2
 0.3
-0.1
 0.7
0.2
 1.2
 2.4
18 LOC4349475 mitochondrial carnitine/acylcarnitine carrier-like protein 4349475 Os10g0573700 3.5 2.8
 4.1
 2.9
-0.5
 0.6
-0.1
 1.0
 -0.6
 2.6
 1.9
0.9
 0.1
-0.1
 1.0
1.0
 -0.8
-1.0
 0.7
0.2
 -0.3
-0.3
 0.4
-0.5
 1.8
-0.1
 -0.1
-0.2
 0.3
0.2
 1.6
1.1
19 LOC4337829 bifunctional protein FolD 2 4337829 Os05g0150800 3.4 3.7
 3.1
 1.2
 0.7
 0.1
 -1.7
 0.5
 1.9
1.1
 2.7
2.0
 1.6
1.6
 0.9
 -0.6
 -1.2
 -0.2
-0.3
 -0.2
-0.2
 0.3
-0.1
 -0.7
 2.1
20 LOC4341715 F-box protein AFR 4341715 Os06g0655500 3.4 3.2
 3.5
 3.4
 1.4


2.1
1.3
 1.6
0.5
 1.5
-0.9


1.4
 0.6
 -1.6
 -0.1
 -0.3
21 LOC4324354 zinc finger CCCH domain-containing protein 12-like 4324354 OSNPB_010917400 3.4 5.3
 1.4
 1.3
0.3
 -0.1
-0.6
 -0.0
-0.1
 0.1
-0.8
 3.0
2.0
 1.2
1.0
 1.3
0.8
 1.4
0.9
 -0.6
 1.4
 0.1
 1.7
1.0
 1.8
0.7
 -0.1
-0.5
 1.8
 1.1
22 LOC4350800 uncharacterized LOC4350800 4350800 Os11g0586300 3.3 3.6
 3.0
 2.6
 0.9
 1.5
 -1.1
 1.0
 0.8
 1.1
 0.5
 -0.2
 -0.5
 -0.7
 3.5
 2.1
 -0.6
 -0.4
 0.6
23 LOC4326871 ocs element-binding factor 1 4326871 Os01g0542700 3.3 3.7
 2.9
 2.7
0.9
 2.9
1.4













24 LOC4347050 uncharacterized LOC4347050 4347050 Os09g0413600 3.3 3.4
 3.1
 1.8
 1.6
 -0.4
-0.9
 0.5
0.1
 0.0
-0.6
 0.3
0.3
 0.8
0.6
 0.6
0.4
 1.9
-0.4
 1.3
0.8
 0.3
0.0
 1.2
0.6
 0.1
0.0
 0.8
0.6
 1.2
0.3
 2.3
1.7
25 LOC4325531 phosphoenolpyruvate carboxylase 1 4325531 Os01g0208700 3.3 3.2
 3.3
 1.5
1.5
 0.6
0.4
 1.0
1.0
 0.2
-0.1
 1.2
-0.3
 0.7
0.5
 0.2
-0.0
 1.3
0.2
 0.6
0.4
 2.2
0.5
 -0.1
-0.2
 0.7
0.5
 0.8
0.3
 0.2
-0.5
 0.8
-0.4
 0.5
0.1
26 LOC4334805 ankyrin repeat domain-containing protein 2A 4334805 Os03g0851700 3.2 4.2
 2.3
 1.9
0.5
 0.6
-0.7
 0.6
0.0
 0.1
-0.1
 0.6
0.3
 0.0
0.0
 2.2
1.4
 0.1
-0.2
 -0.6
 -0.3
 -0.1
 0.0
 0.1
 0.6
 0.2
 0.9
27 LOC4349278 methylsterol monooxygenase 1-1 4349278 Os10g0545200 3.2 3.4
 3.0
 1.8
 0.5
 0.3
-0.8
 -0.0
-0.3
 0.3
-0.3
 0.2
0.2
 -0.6
-0.9
 -1.4
-1.7
 0.5
 0.4
 0.4
 -0.5
-0.9
 0.2
-0.7
 0.2
-0.6
 0.6
 -0.4
28 LOC4331022 RING-H2 finger protein ATL3 4331022 Os02g0798200 3.2 2.9
 3.5
 2.2
1.7
 1.2
0.6
 1.2
 -0.2
 3.7
 1.8
-0.1
 2.3
1.3
 1.8
-1.2
 1.3
0.9
 1.5
-0.0
 1.2
0.3
 2.5
 1.8
 -1.0
 3.2
 1.3
29 LOC4346075 uncharacterized LOC4346075 4346075 Os08g0521800 3.2 2.7
 3.7
 2.7
 -0.1
 -0.7
 -0.7
 0.9
 1.1
0.9
 0.5
-0.1
 1.7
1.1
 -0.6
 0.0
 0.0
 0.6
 0.5
 -0.3
 1.1
 -1.4
30 LOC4342162 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 4342162 OSNPB_070100200 3.2 3.2
 3.1
 2.1
1.1
 1.1
-0.5
 1.8
0.1
 -1.6
-1.7
 2.1
1.7
 1.7
1.6
 1.1
0.8
 2.6
1.9
 -1.1
 0.2
 0.4
 1.2
-0.8
 1.2
-0.1
 -0.4
-1.3
 1.1
 -0.5
31 LOC4348760 silicon efflux transporter LSI2-like 4348760 Os10g0447900 3.2 4.3
 2.0
 1.7
1.6
 0.9
0.6
 -0.5
 1.0
 -1.1
 1.8
1.2
 1.0
0.6
 1.3
0.2
 2.7
-0.7
 1.4
0.6
 0.9
0.8
 0.1
-0.8
 1.2
0.0
 1.8
0.1
 0.7
 0.9
32 LOC4346672 bZIP transcription factor 44 4346672 Os09g0306400 3.2 3.5
 2.8
 2.1
-0.7
 2.4
1.2













33 LOC4336288 zinc finger protein CONSTANS-LIKE 3 4336288 Os04g0497700 3.2 2.7
 3.6
 2.8
0.9
 -0.7
-1.3
 0.0
-0.4
 -0.1
-1.3
 4.0
-0.6
 0.8
0.6
 3.7
2.9
 0.9
0.5
 0.9
0.1
 2.3
1.1
 0.9
0.5
 2.1
0.5
 0.8
0.5
 -0.7
-1.1
 1.8
0.5
 0.9
-0.3
34 LOC4341854 glutamate receptor 3.4 4341854 Os06g0680500 3.1 3.8
 2.4
 2.4
1.1
 2.1
0.5
 0.8
0.4
 0.5
-0.3
 1.9
0.8
 1.4
0.8
 1.0
1.0
 1.4
0.3
 0.2
-0.5
 -1.1
-1.3
 1.2
-1.2
 1.4
-0.1
 1.2
1.1
 -0.4
-0.4
 2.2
 2.5
35 LOC4347333 homeobox-leucine zipper protein HOX4-like 4347333 OSNPB_090470500 3.1 2.7
 3.5
 3.3
1.8
 1.8
1.1
 1.7
0.9
 0.6
0.2
 2.4
1.0
 2.2
1.5
 5.5
2.7
 3.7
2.9
 2.1
1.8
 1.0
0.1
 1.4
0.4
 2.8
1.5
 1.5
1.5
 0.9
0.9
 4.7
2.4
 2.8
2.3
36 LOC4336796 uncharacterized LOC4336796 4336796 Os04g0586100 3.1 3.0
 3.2
 2.5
2.1
 2.7
2.1













37 LOC4343523 isopentenyl-diphosphate Delta-isomerase I 4343523 Os07g0546000 3.1 2.4
 3.8
 2.8
-0.7
 -0.1
-0.3
 -0.6
-0.8
 1.1
0.1
 -1.0
-1.4
 0.4
0.0
 0.2
-1.0
 -0.1
-0.8
 1.2
-0.5
 0.3
-0.1
 0.7
-0.2
 0.5
 0.9
 1.5
 -1.0
 1.8
38 LOC4347295 probable carboxylesterase 2 4347295 Os09g0462100 3.1 3.9
 2.3
 1.9
 2.0













39 LOC4343569 cyclin-D6-1-like 4343569 OSNPB_070556000 3.1 3.1
 3.0
 2.2
 0.8
 0.0
 -0.9
 -2.0
 0.2
-0.3
 1.4
0.5
 0.4
-0.4
 0.5
0.3
 1.5
-0.2
 0.3
-0.1
 -0.5
-0.5
 -0.0
-0.4
 0.6
-0.3
 1.8
 -0.2
40 LOC4329833 probable serine/threonine-protein kinase DDB_G0276461 4329833 Os02g0591900 3.0 3.5
 2.6
 0.9
-0.7
 0.8
-0.3
 -1.6
 -0.6
 -0.3
 0.6
-0.3
 1.0
0.4
 0.3
-0.5
 0.0
 0.2
 -0.8
 -0.7
 0.7
 0.8
 0.2
 0.4
41 LOC4346563 BTB/POZ domain-containing protein At5g47800 4346563 Os09g0266600 3.0 2.7
 3.3
 3.0
 1.3
 0.5
 1.0
 3.2
 1.4
1.2
 1.9
0.9
 2.0
1.0


0.3
-0.8
 0.7
-0.1
 1.0
-1.3
 1.1
-0.5
 -0.7
-0.9
42 LOC4336793 uncharacterized LOC4336793 4336793 Os04g0585700 3.0 3.6
 2.4
 2.8
 1.8













43 LOC4339814 uncharacterized LOC4339814 4339814 Os05g0595300 3.0 4.1
 1.9
 2.4
 2.1
 0.7
-0.1
 3.1
1.5
 4.6
2.1
 1.6
1.0
 1.9
-0.8
 2.6
1.4
 1.8
 0.1
 1.2
 2.2
-0.4
 1.2
-0.2
 1.5
1.3
 3.0
2.0
 3.0
2.2
44 LOC4342700 remorin 4.1-like 4342700 Os07g0208600 3.0 3.6
 2.4
 3.0
2.4
 3.8
1.4
 2.1
0.7
 -0.0
-0.6
 1.3
0.1
 0.6
-0.6
 0.0
-0.3
 0.7
-0.9
 1.7
1.3
 2.0
1.0
 2.2
1.7
 1.8
1.7
 1.2
1.1
 0.8
0.5
 2.5
0.7
 3.1
1.3
45 LOC4337541 uncharacterized LOC4337541 4337541 Os05g0103400 3.0 3.1
 2.9
 0.8
 1.1













46 LOC4344164 ferredoxin-dependent glutamate synthase, chloroplastic-like 4344164 OSNPB_070658400 3.0 2.5
 3.5
 1.2
 0.2
 0.3
-0.4
 1.9
-0.1
 0.3
-0.3
 0.7
0.3
 1.9
0.8
 1.3
0.4
 0.1
 -1.1
 -1.1
 -0.5
-0.9
 0.5
0.3
 -0.6
-1.7
 0.7
 0.7
47 LOC4334283 putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_0910 4334283 Os03g0775000 3.0 2.2
 3.7
 1.5
 -0.6
 -0.9
 -0.6
 1.2
 1.0
0.8
 -0.0
-1.5
 1.5
0.9


1.3
 1.3
 -0.6
 -0.4
 0.5
48 LOC4341174 uncharacterized LOC4341174 4341174 Os06g0523300 3.0 2.4
 3.5
 3.3
2.4
 1.9
1.3
 0.1
-1.2
 1.5
0.1
 0.9
-0.1
 -0.0
 0.2
 0.1
 -1.0
 2.1
 -0.6
 0.2
 -0.2
 1.8
 0.9
 -0.1
49 LOC4345580 uncharacterized LOC4345580 4345580 Os08g0416800 3.0 2.9
 3.0
 1.6
 2.2
 0.9
 2.1
 0.4
 -0.2
-0.8
 0.8
-0.2
 0.3
-0.7


-0.8
 0.4
 -0.1
 0.7
 0.4
50 LOC4332132 glucan endo-1,3-beta-glucosidase 7 4332132 Os03g0227400 2.9 3.9
1.8
 0.7













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