Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   9266204   nuclear transcription factor Y subunit C-2-like 
 osa-r.5   9266204   nuclear transcription factor Y subunit C-2-like 
 osa-m.8   9266204   nuclear transcription factor Y subunit C-2-like 
 osa-u.4   4341785   nuclear transcription factor Y subunit C-4-like 
 osa-u.4   4347391   nuclear transcription factor Y subunit C-6-like 
 osa-u.4   4345928   nuclear transcription factor Y subunit C-6-like 
 ath-u.4   NF-YC1   nuclear factor Y, subunit C1 
 ath-u.4   NF-YC4   nuclear factor Y, subunit C4 
 gma-u.4   NF-YC02   nuclear factor Y transcription factor family protein 
 sly-u.4   CIP2a   CONSTANS interacting protein 2a 
 sly-u.4   101247122   nuclear transcription factor Y subunit C-1 
 sly-u.4   CIP2b   CONSTANS interacting protein 2b 
 ppo-u.4   112327494   nuclear transcription factor Y subunit C-3-like 
 ppo-u.4   18102323   nuclear transcription factor Y subunit C-9 
 ppo-u.4   7454560   nuclear transcription factor Y subunit C-4 
 mtr-u.4   120578221   nuclear transcription factor Y subunit C-2-like 
 mtr-u.4   11429780   nuclear transcription factor Y subunit C-3 
 mtr-u.4   11410747   nuclear transcription factor Y subunit C-3 

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Top 50 coexpressed genes to 9266204 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  15 76 25.75
 osa196   Photosynthesis - antenna proteins  10 15 23.71
 osa860   Porphyrin metabolism  3 42 4.02
 osa740   Riboflavin metabolism  1 21 -
 osa710   Carbon fixation in photosynthetic organisms  1 77 -

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osa:LOC9266204 (nuclear transcription factor Y subunit C-2-like) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
9266204
osa-r.5
for
9266204
osa-m.8
for
9266204
osa-u.4
for
4341785
osa-u.4
for
4347391
osa-u.4
for
4345928
ath-u.4
for
NF-YC1
ath-u.4
for
NF-YC4
gma-u.4
for
NF-YC02
sly-u.4
for
CIP2a
sly-u.4
for
101247122
sly-u.4
for
CIP2b
ppo-u.4
for
112327494
ppo-u.4
for
18102323
ppo-u.4
for
7454560
mtr-u.4
for
120578221
mtr-u.4
for
11429780
mtr-u.4
for
11410747
1 LOC4330408 pentatricopeptide repeat-containing protein At1g31920 4330408 Os02g0697500 6.7 7.1
 6.3
 0.3
 0.4
 -0.2

0.7
-0.6
 -1.3
 2.8
 -0.7
 -2.4
 0.7
 -0.3
 0.9
 -1.1
 -1.4
2 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 6.4 6.0
 6.9
 0.3
 0.3
 -0.2
 0.4
 0.5
 0.3
-0.0
 -0.0
 2.5
 0.6
 0.0
-0.7
 -0.4
-1.5
 0.1
-0.1
 0.6
 -0.7
 0.2
3 LOC4339270 photosystem II reaction center W protein, chloroplastic-like 4339270 Os05g0508900 6.4 6.4
 6.5
 0.8
-0.5
 0.1
-0.5
 -0.1
-0.8
 1.5
 1.3
 -0.4
-0.7
 1.1
1.1
 3.1
2.2
 -1.1
-1.6
 -0.2
-0.5
 0.4
0.2
 -0.0
-0.0
 -0.1
-0.3
 -0.3
-0.3
 0.4
-0.4
4 LOC4343583 chlorophyll a-b binding protein CP29.1, chloroplastic 4343583 Os07g0558400 6.4 6.1
 6.7
 -0.5
 -0.1
 1.0
 1.8
1.3
 1.2
1.1
 0.4
-0.2
 1.2
 3.2
 0.7
 0.6
-0.4
 0.5
-0.3
 1.8
1.6
 0.6
0.1
 0.1
-0.3
 0.2
-0.5
5 LOC4344566 zinc finger CCCH domain-containing protein 54-like 4344566 OSNPB_080126700 6.3 5.7
 7.0
 -0.2
 -0.6
 -0.2
 2.7
 2.8
 -1.2
-1.2
 -0.8
-2.3
 0.9
-0.2
 -0.0
-1.9
 -0.8
-1.1
 1.1
0.8
 -0.2
-0.6
 0.5
-0.8
 0.8
-0.7
 -0.0
-0.8
6 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 6.3 6.0
 6.5
 0.3
 -0.3
 0.1
 0.9
 1.0
 -1.3
-1.6
 -0.4
 3.8
 0.2
 0.4
-0.3
 0.2
-0.9
 2.0
1.0
 -0.4
 -0.7
 -1.0
7 LOC4348209 uncharacterized LOC4348209 4348209 Os10g0181600 6.0 7.1
 5.0
 -0.3
 -0.5
 -0.5

0.4
-0.5
 -0.3
 2.4
 -0.8
 -1.1
 0.2
 0.2
 -0.1
 0.2
 -0.3
8 LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic 4343709 Os07g0577600 6.0 5.9
 6.1
 -0.4
 0.4
 0.2
 1.1
 0.5
 1.4
0.2
 0.7
 2.6
 -0.6
 -0.3
-0.6
 0.7
-0.9
 1.5
0.1
 -0.4
 -0.1
 -0.0
9 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 5.9 5.6
 6.2
 -1.0
 -0.5
 0.0
 0.4
 0.5
 -1.0
-1.1
 -0.7
-1.7
 2.7
1.4
 0.2
-0.8
 -0.3
 -0.3
 0.1
 -0.3
 -0.5
 -0.8
10 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 5.9 5.0
 6.8
 -0.9
 -0.1
 0.5
 0.6
 0.3
 -1.0
-1.9
 -0.2
-0.3
 2.5
1.9
 0.2
-0.3
 -0.3
-1.1
 -0.2
-0.3
 0.9
0.6
 -0.6
 -0.8
 -0.9
11 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 5.9 6.3
 5.5
 -0.1
-0.2
 0.6
0.5
 0.9
0.4
 1.0
1.0
 1.0
0.5
 0.1
-0.1
 1.0
0.6
 3.1
3.0
 1.3
1.1
 -0.0
-0.2
 -0.1
-0.2
 1.0
0.9
 1.0
0.4
 0.2
0.2
 1.0
0.1
12 LOC4345044 RNA polymerase sigma factor sigF, chloroplastic 4345044 Os08g0242800 5.9 5.1
 6.7
 1.2
 -1.1
 -1.6
 0.1
 -0.1
 1.1
0.4
 1.4
 0.4
 -1.6
 -2.1
 -0.2
 0.8
 -1.3
-1.6
 -0.8
-2.6
 0.2
-1.5
13 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 5.7 5.8
 5.7














14 LOC4343070 photosystem I reaction center subunit IV, chloroplastic 4343070 Os07g0435300 5.7 4.7
 6.7
 -0.4
 0.3
 0.0
 1.9
0.8
 0.8
0.5
 0.3
-0.4
 2.6
1.3
 4.7
3.5
 0.3
-0.0
 -0.2
 0.2
 1.1
 0.2
-0.1
 -0.3
-0.6
 1.0
-0.3
15 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 5.6 5.6
 5.6
 -0.7
 0.7
 -0.0
 0.8
 0.6
 -0.3
 1.1
1.0
 3.1
2.5
 -0.6
-0.8
 -0.0
 -0.6
 1.3
 -1.0
 -1.5
 -1.7
16 LOC4347935 protein TIC 62, chloroplastic-like 4347935 Os10g0100300 5.5 4.9
 6.0
 0.0
 -0.9
 -0.5
 -0.1
 -0.6
 0.1
-1.0
 1.2
 2.0
 -0.4
 0.5
-0.0
 -1.0
-1.4
 0.7
0.5
 -0.0
 -0.6
 -0.9
17 LOC4342404 photosystem I reaction center subunit psaK, chloroplastic 4342404 Os07g0148900 5.4 4.6
 6.2
 -0.1
 -0.1
 0.0
 1.0
 1.4
 -0.5
-0.9
 0.7
 3.5
 0.1
 -0.2
-0.4
 -0.6
-0.7
 -0.4
-0.6
 -1.4
 -0.4
 -0.4
18 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 5.4 4.9
 5.9
 -0.3
 -0.5
 -0.8
 1.5
 0.9
 -0.2
-0.5
 1.3
 4.0
 -0.5
 0.9
-1.5
 -0.4
-0.6
 0.7
-0.3
 -0.1
 -0.3
 -0.6
19 LOC4324196 lycopene epsilon cyclase, chloroplastic 4324196 Os01g0581300 5.3 5.4
 5.2
 0.1
 -1.3
 -0.8
 0.2
 0.4
 -0.4
-1.3


-0.9
 0.7
 1.5
 -0.2
 -0.2
 -1.6
20 LOC4329862 rhodanese-like domain-containing protein 11, chloroplastic 4329862 Os02g0596000 5.3 4.7
 5.8
 -0.3
 -0.2
 -1.0
 1.1
 0.8
 1.0
 0.7
 2.4
 -0.6
 -0.6
 1.3
 1.3
 0.3
 -0.2
 -0.4
21 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 5.2 5.4
 5.0
 -0.5
 0.1
 -0.4
 1.7
 0.9
 0.4
-0.4
 0.8
 3.6
 1.8
 -0.2
-0.7
 0.4
-0.1
 0.4
0.3
 0.3
0.0
 0.8
0.4
 -0.0
-0.8
22 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 5.2 5.3
 5.0
 -0.1
-0.2
 0.6
0.5
 0.9
0.4
 1.0
1.0
 1.0
0.5
 0.1
-0.1
 1.0
0.6
 3.1
3.0
 1.3
1.1
 -0.0
-0.2
 -0.1
-0.2
 1.0
0.9
 1.0
0.4
 0.2
0.2
 1.0
0.1
23 LOC4352085 photosystem I reaction center subunit XI, chloroplastic 4352085 Os12g0420400 5.2 5.3
 5.1
 -0.7
 0.4
 -0.3
 1.3
 0.3
 0.5
0.1
 1.7
1.3
 4.9
2.9
 0.5
0.5
 0.2
0.1
 0.2
-0.2
 0.3
-0.1
 -0.1
 0.4
 0.4
24 LOC4329783 photosystem II 5 kDa protein, chloroplastic 4329783 Os02g0581100 5.2 4.7
 5.7
 -0.2
 1.1
 0.9
 1.7
 0.9
 -0.8
-1.1
 -1.3
 0.3
 0.4
 -0.3
-0.3
 0.2
-0.2
 0.4
0.4
 0.4
-0.1
 1.1
0.6
 0.7
-0.1
25 LOC4330626 zinc finger protein CONSTANS-LIKE 16 4330626 Os02g0731700 5.1 4.7
 5.5
 0.7
0.7
 -0.4
-0.7
 -0.5
-0.5
 2.5
1.2
 2.6
1.3
 -0.3
-0.4
 1.6
0.6
 2.9
2.3
 0.1
-0.5
 -0.7
-0.8
 0.8
0.3
 0.3
0.0
 -0.0
-2.2
 -0.8
-1.0
 -1.2
-2.5
26 LOC4336044 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 4336044 Os04g0459500 5.0 5.2
 4.9
 -0.5
 0.4
 0.6
 -0.1
-0.2
 0.3
0.2
 -0.2
-0.3
 0.7
-0.2
 2.8
0.3
 0.6
-0.8
 0.2
 -1.7
 1.7
 -0.1
 0.3
 -0.7
27 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 5.0 4.6
 5.4
 0.1
 0.1
 -0.2
 1.4
1.3
 0.9
0.8
 0.4
0.1
 0.5
 2.8
 1.0
 0.1
-0.4
 0.2
0.0
 1.6
1.2
 -0.4
-0.6
 -0.1
-1.4
 0.0
-1.4
28 LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic 4350176 Os11g0242800 5.0 4.4
 5.5
 -0.1
 0.3
 1.3
 0.4
 0.6
 0.1
0.1
 1.2
 3.3
 1.2
 0.2
-0.5
 -0.7
-0.8
 0.2
-0.1
 0.5
 -0.0
 0.1
29 LOC4343515 oxygen-evolving enhancer protein 3, chloroplastic-like 4343515 OSNPB_070544800 4.9 4.9
 5.0
 0.4
 -0.7
 -0.4
 1.6
0.8
 1.6
0.4
 -0.5
-0.8
 1.6
 2.6
 -0.2
 0.0
-0.4
 -0.4
-1.6
 1.1
0.9
 0.2
 -0.6
 -0.3
30 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 4.9 4.8
 5.0
 -0.0
 -0.3
 -0.2
 -0.8
 -0.4
 -1.2
-1.5
 0.6
 3.7
 -1.7
 -0.6
 0.1
 1.5
 -0.3
 -0.9
 -0.5
31 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 4.9 4.7
 5.1
 -0.4
 -0.5
 -0.0
 1.4
1.2
 0.6
0.2
 0.7
-0.3
 2.0
0.6
 4.8
2.9
 -0.3
-0.9
 -0.3
 -0.7
 1.8
 -0.2
 0.3
 -1.6
32 LOC4329191 RHOMBOID-like protein 9, chloroplastic 4329191 Os02g0326700 4.9 3.5
 6.3
 -0.5
 -1.3
 -1.0
 -0.4
 -0.2
 -0.8
-0.8
 -0.6
 2.1
 -0.5
 -1.4
 -0.7
 -0.7
 0.2
 -0.4
 0.3
33 LOC4347395 photosystem I reaction center subunit V, chloroplastic 4347395 Os09g0481200 4.9 4.6
 5.1
 0.4
 0.2
 0.2
 0.5
 0.9
 -0.0
-0.2
 1.3
 2.6
 0.2
 0.2
-0.0
 0.3
0.2
 0.6
0.3
 -0.6
 -1.0
 -1.8
34 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 4.9 6.4
 3.3
 -0.6
 -0.3
 -0.0
 1.2
 0.9
 -0.4
-1.9
 0.8
 2.8
 -0.1
 0.2
-0.7
 0.4
-0.7
 0.8
0.6
 -0.7
 -0.9
 -0.8
35 LOC4339017 probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 4339017 OSNPB_050460600 4.8 3.5
 6.1
 2.1
 -0.3
 -0.2
 2.8
 2.3
 -0.4
 -0.8
 1.5
 -0.5
 -0.8
 -0.7
 -0.0
 -0.4
 -1.1
 -1.3
36 LOC4330625 protein CURVATURE THYLAKOID 1A, chloroplastic 4330625 Os02g0731600 4.8 5.2
 4.4
 0.2
0.1
 1.7
0.8
 1.5
0.4
 0.6
 0.6
 -0.1
-0.9
 2.6
1.3
 3.9
2.3
 -0.6
-0.9
 0.4
-0.2
 0.1
-1.1
 1.1
0.9
 1.1
 0.4
 -0.0
37 LOC4347585 uncharacterized LOC4347585 4347585 Os09g0517000 4.8 4.6
 5.0
 0.3
 0.2
 0.6
 1.4
 1.3
 -1.7
-2.1
 0.1
 3.8
 -0.6
 0.3
 0.1
 1.1
 1.3
 0.2
 0.8
38 LOC4340704 protein CURVATURE THYLAKOID 1A, chloroplastic 4340704 Os06g0264800 4.8 4.7
 4.9
 0.2
0.1
 1.7
0.8
 1.5
0.4
 0.6
 0.6
 -0.1
-0.9
 2.6
1.3
 3.9
2.3
 -0.6
-0.9
 0.4
-0.2
 0.1
-1.1
 1.1
0.9
 1.1
 0.4
 -0.0
39 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 4.8 5.1
 4.5
 0.2
 0.1
 0.4
 1.3
 1.4
 -0.0
-0.7
 0.4
0.2
 3.3
2.6
 0.2
-0.4
 -1.0
-1.0
 0.5
0.2
 1.4
0.8
 0.6
 0.0
 0.6
40 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 4.8 4.6
 4.9
 0.1
 0.5
 0.4
 0.1
 0.1
 -0.6
-0.9
 -0.3
-0.4
 2.3
1.6
 1.2
0.7
 -0.4
 -0.3
 -0.3
 0.9
 -0.1
 0.4
41 LOC4349004 protochlorophyllide reductase B, chloroplastic-like 4349004 OSNPB_100496900 4.8 5.7
 3.9
 -0.3
-1.3
 0.1
-0.5
 0.4
-0.7
 1.1
0.5
 3.0
1.7
 -0.7
-1.1
 1.5
0.9
 3.6
3.6
 0.7
-1.5
 -0.2
-0.3
 0.4
-0.1
 1.9
1.2
 -1.6
 -1.2
 -1.4
42 LOC4326901 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic 4326901 Os01g0279100 4.7 3.6
 5.8
 -0.3
 -0.1
 -0.2
 -0.3
 0.3
 -0.1
-0.3
 -0.7
 2.6
 -0.2
 -0.7
 -0.3
 0.2
 1.2
 0.6
 0.2
43 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 4.7 4.4
 5.1
 -0.1
 1.9
 0.6
 1.5
 0.3
 0.4
-0.8
 1.7
 2.5
 1.1
 -0.5
-0.9
 0.5
-0.1
 0.5
0.2
 -0.6
-1.0
 -0.6
-0.7
 -0.1
-1.7
44 LOC4331129 uncharacterized LOC4331129 4331129 Os02g0815400 4.7 4.0
 5.4
 0.9
 -0.1
 0.4
 0.3
 -0.5
 -0.8
 1.1
 2.2
 -2.5
 -0.9
 -0.4
 0.6
 0.4
 0.7
 -1.1
45 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 4.7 4.6
 4.7
 -0.9
 -0.2
 0.0
 -0.5
 0.4
 0.2
-0.4
 -0.2
 3.7
 0.1
 0.0
 -1.6
 0.0
 1.2
 -0.3
 -0.1
46 LOC4331514 probable signal recognition particle 43 kDa protein, chloroplastic 4331514 OSNPB_030131900 4.6 3.4
 5.9
 0.7
 0.8
 0.2
 2.8
 2.3
 -0.4
 1.0
 3.4
 -1.6
 -0.1
-0.7
 -0.1
-1.7
 0.9
0.0
 -1.6
 0.0
 -0.2
47 LOC4342395 photosystem II 10 kDa polypeptide, chloroplastic 4342395 Os07g0147500 4.6 4.3
 5.0
 0.1
-0.2
 -0.2
-0.3
 -0.4
-0.4
 1.9
 1.0
 0.4
-0.1
 0.8
-1.1
 3.1
-0.6
 1.6
1.6
 1.0
0.4
 1.3
-0.3
 1.3
0.7
 -0.2
 -0.4
 0.1
48 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 4.6 5.4
 3.8
 -0.4
 -0.1
 -0.3
 0.8
 0.3
 0.0
-0.2
 -0.3
-0.9
 3.4
2.8
 -0.5
-0.5
 -0.3
 -0.7
 0.4
 0.9
 0.1
 1.0
49 LOC4332887 transcription termination factor MTEF1, chloroplastic 4332887 Os03g0360600 4.4 3.4
 5.4
 -0.1
 0.5
 0.5
 2.0
 1.2
 1.2
1.0
 0.4
 2.0
 -1.1
 -1.1
 0.4
 0.6
 0.2
 -0.9
 -0.3
50 LOC4334032 uncharacterized LOC4334032 4334032 Os03g0736600 4.4 4.5
 4.2
 -0.5
 0.6
 -0.1











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