Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.4   18099874   rhodanese-like domain-containing protein 9, chloroplastic 
 ppo-r.3   18099874   rhodanese-like domain-containing protein 9, chloroplastic 
 gma-u.4   100801860   rhodanese-like domain-containing protein 9, chloroplastic-like 
 gma-u.4   100500055   rhodanese-like domain-containing protein 9, chloroplastic 
 mtr-u.4   11440441   rhodanese-like domain-containing protein 9, chloroplastic 
 ath-u.4   AT2G42220   Rhodanese/Cell cycle control phosphatase superfamily protein 
 sly-u.4   101266002   rhodanese-like domain-containing protein 9, chloroplastic 
 osa-u.4   4346604   rhodanese-like domain-containing protein 9, chloroplastic 

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Top 50 coexpressed genes to 18099874 (ppo-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 pop196   Photosynthesis - antenna proteins  7 25 13.23
 pop195   Photosynthesis  7 90 9.08
 pop450   Selenocompound metabolism  1 22 -
 pop970   Aminoacyl-tRNA biosynthesis  2 101 -
 pop620   Pyruvate metabolism  1 141 -

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ppo:LOC18099874 (rhodanese-like domain-containing protein 9, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.4
for
18099874
ppo-r.3
for
18099874
gma-u.4
for
100801860
gma-u.4
for
100500055
mtr-u.4
for
11440441
ath-u.4
for
AT2G42220
sly-u.4
for
101266002
osa-u.4
for
4346604
1 LOC7476812 uncharacterized LOC7476812 7476812 POPTR_001G035200v3 4.2 4.6
 1.6
1.4
 0.5
0.4
 2.0
0.8
 0.2
0.1
 -0.4
 0.4
0.4
2 LOC7466067 chlorophyll a-b binding protein CP29.2, chloroplastic 7466067 POPTR_016G115200v3 3.8 4.4
 5.9
4.9
 8.7
5.6
 5.8
3.3
 9.4
8.0
 5.4
 7.0
3 LOC7473011 chlorophyll a-b binding protein CP24 10A, chloroplastic 7473011 POPTR_001G210000v3 3.8 4.0
 5.9
5.6
 10.2
7.2
 4.9
 11.4
 4.1
3.7
 5.1
4 LOC7455996 chlorophyll a-b binding protein 151, chloroplastic 7455996 POPTR_014G165100v3 3.7 4.2
 5.0
4.9
 9.5
7.3
 4.5
3.9
 10.4
10.3
 5.8
4.2
 6.6
5.3
5 LOC7497759 uncharacterized protein At4g37920 7497759 POPTR_007G000400v3 3.6 3.9
 1.2
1.1
 0.9
0.6
 2.8
 1.1
 0.2
 1.5
6 LOC7489580 methionine--tRNA ligase, chloroplastic/mitochondrial 7489580 POPTR_010G207300v3 3.6 4.0
 1.2
0.5
 1.3
1.0
 0.4
 0.5
 1.0
 -0.8
7 LOC7474216 photosystem I reaction center subunit II, chloroplastic 7474216 POPTR_010G089400v3 3.6 4.2
 4.4
3.7
 6.5
4.2
 6.3
 9.5
7.8
 8.8
 5.6
8 LOC112324181 photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like 112324181 POPTR_014G198400v3 3.4 4.0





9 LOC7470005 bZIP transcription factor 44 7470005 POPTR_004G158200v3 3.4 4.2
 0.2
0.0
 0.8
0.7
 -0.5
-0.7
 -0.0
-0.3
 3.3
0.2
 -0.1
-0.4
10 LOC7467065 30S ribosomal protein S6 alpha, chloroplastic 7467065 POPTR_001G088300v3 3.4 3.7
 1.4
0.5
 2.7
2.4
 1.8
 4.0
 2.0
 1.4
11 LOC7492945 tricalbin-3 7492945 POPTR_010G170300v3 3.4 3.9
 -0.2
-0.5
 1.1
0.1
 -0.4
 -0.4
-0.6
 1.5
 0.1
12 LOC18105563 uncharacterized LOC18105563 18105563 POPTR_015G036500v3 3.4 3.7
 1.3
0.9
 1.7
1.6
 2.0
 -0.7
 4.8
 1.2
13 LOC7471200 photosystem I reaction center subunit IV A, chloroplastic 7471200 POPTR_002G253800v3 3.4 3.8
 5.2
4.5
 7.2
5.6
 6.5
4.8
 10.2
8.2
 6.4
6.1
 5.9
14 LOC18104391 uncharacterized LOC18104391 18104391 POPTR_013G105500v3 3.4 3.9


1.7
 2.3
 1.1
15 LOC18100169 RNA polymerase sigma factor sigF, chloroplastic 18100169 POPTR_006G125700v3 3.4 3.8
 1.5
1.3
 2.5
1.7
 4.2
0.9
 0.9
 1.6
 2.6
16 LOC7486684 probable plastid-lipid-associated protein 4, chloroplastic 7486684 POPTR_001G209600v3 3.3 3.4
 1.6
1.5
 4.2
3.1
 2.4
1.6
 1.8
-0.1
 3.3
 2.8
17 LOC7464911 cell division protein FtsY homolog, chloroplastic 7464911 POPTR_014G078800v3 3.3 3.6
 1.5
 0.8
 0.5
 1.3
 2.9
 1.1
18 LOC7453924 pentatricopeptide repeat-containing protein At1g02150 7453924 POPTR_002G139400v3 3.3 3.4
 0.7
0.2
 0.7
0.7
 1.5
 1.2
 1.4
 -0.4
19 LOC7465087 protein plastid transcriptionally active 16, chloroplastic 7465087 POPTR_001G244800v3 3.3 3.9
 5.3
4.5
 7.8
5.2
 3.2
 8.4
 7.4
 4.7
20 LOC7456015 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 7456015 POPTR_014G169300v3 3.3 3.7
 1.4
 3.1
 2.2
 -0.9
 2.0
 0.7
21 LOC18100475 nifU-like protein 3, chloroplastic 18100475 POPTR_006G165600v3 3.3 3.5
 2.2
1.9
 3.4
3.0
 2.8
 0.6
 2.7
 2.0
22 LOC7480941 photosystem II core complex proteins psbY, chloroplastic 7480941 POPTR_008G181900v3 3.3 3.9
 4.6
2.8
 6.9
4.5
 6.9
3.3
 6.5
 4.8
 4.9
23 LOC18105580 uncharacterized LOC18105580 18105580 POPTR_015G033200v3 3.2 3.5
 0.6
 0.2
 -0.3
 1.9
 -0.1
 0.6
24 LOC7480891 31 kDa ribonucleoprotein, chloroplastic 7480891 POPTR_008G172100v3 3.2 3.0
 3.2
0.8
 4.5
3.3
 7.0
 3.4
 6.6
 2.1
25 LOC18102278 probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic 18102278 POPTR_010G015200v3 3.2 3.6
 2.8
2.6
 3.9
2.4
 2.5
-0.8
 3.8
-0.5
 3.0
-0.2
 2.7
-0.2
26 LOC7478631 putative low molecular weight protein-tyrosine-phosphatase slr0328 7478631 POPTR_009G146800v3 3.2 3.5
 0.3
-0.2
 0.7
-1.1
 -1.0
 -0.1
 2.7
 1.4
27 LOC7486483 RNA-binding protein CP29B, chloroplastic 7486483 POPTR_016G090700v3 3.2 3.1
 0.7
0.6
 1.4
0.5
 0.7
 0.3
-0.2
 1.4
1.3
 0.5
-0.0
28 LOC18104606 uncharacterized LOC18104606 18104606 POPTR_013G128700v3 3.2 3.7
 3.9
2.9
 5.5
5.5
 2.6
 14.2
 3.5
 4.0
29 LOC7454544 ribonuclease J 7454544 POPTR_012G095800v3 3.2 3.4
 2.0
0.9
 2.2
0.7
 0.7
0.1
 -2.0
 1.0
 -0.9
30 LOC7498162 cytochrome b6-f complex iron-sulfur subunit, chloroplastic 7498162 POPTR_019G118500v3 3.2 3.4
 2.5
1.6
 4.1
2.8
 5.2
 3.0
 3.1
 1.3
31 LOC7496570 chlorophyll a-b binding protein 7, chloroplastic 7496570 POPTR_003G171500v3 3.2 3.4
 5.8
5.7
 7.8
6.2
 4.3
 8.2
 7.7
 5.6
32 LOC18107279 peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic 18107279 POPTR_017G072800v3 3.2 3.5
 3.7
3.1
 5.5
3.8
 4.2
 4.2
 2.2
 4.1
33 LOC7494480 probable zinc metalloprotease EGY2, chloroplastic 7494480 POPTR_008G066500v3 3.2 3.4
 3.3
1.5
 4.3
3.1
 2.4
 1.8
 4.1
 4.2
34 LOC7495298 oxygen-evolving enhancer protein 3-2, chloroplastic 7495298 POPTR_011G031300v3 3.2 3.5
 4.7
4.0
 6.3
6.1
 4.9
 9.1
7.9
 7.4
 4.0
35 LOC18104961 uncharacterized LOC18104961 18104961 POPTR_014G037000v3 3.1 3.6
 4.2
3.9
 5.6
5.4
 4.4
 3.2
 3.9
2.8
 1.6
36 LOC18107343 uncharacterized LOC18107343 18107343 POPTR_017G099600v3 3.1 3.4
 1.9
 0.8
 2.4
 0.1
 2.6
 1.4
37 LOC7462929 probable lactoylglutathione lyase, chloroplastic 7462929 POPTR_018G042100v3 3.1 3.2
 4.0
2.1
 5.7
2.1
 2.3
2.0
 0.2
-0.0
 1.7
1.6
 1.4
0.6
38 LOC7480481 oxygen-evolving enhancer protein 1, chloroplastic 7480481 POPTR_005G130400v3 3.1 3.2
 5.6
5.4
 7.1
5.5
 6.7
6.1
 6.5
6.0
 4.6
 5.1
39 LOC7478572 uncharacterized LOC7478572 7478572 POPTR_009G160500v3 3.1 3.0
 2.8
2.7
 3.4
1.4
 2.3
 2.9
 2.9
 1.6
40 LOC7494582 protease Do-like 8, chloroplastic 7494582 POPTR_004G129200v3 3.1 3.2
 1.3
 1.6
 3.0
 0.6
 2.7
 2.7
41 LOC7482788 chlorophyll a-b binding protein 7, chloroplastic 7482788 POPTR_001G056700v3 3.1 3.2
 5.8
5.7
 7.8
6.2
 4.3
 8.2
 7.7
 5.6
42 LOC18100110 carotene epsilon-monooxygenase, chloroplastic 18100110 POPTR_006G119800v3 3.1 3.3
 0.2
-0.3
 0.8
0.8
 1.2
 1.0
 2.3
 1.3
43 LOC7497381 protochlorophyllide reductase 7497381 POPTR_013G135500v3 3.0 2.9
 5.9
3.1
 9.2
5.0
 5.5
 6.2
5.5
 5.3
5.0
 6.5
2.8
44 LOC7476378 methionine aminopeptidase 1D, chloroplastic/mitochondrial 7476378 POPTR_005G137400v3 3.0 3.5
 0.9
 -0.2
 1.1
 1.3
 0.8
 0.8
45 LOC7468576 uncharacterized LOC7468576 7468576 POPTR_009G043600v3 3.0 3.4
 1.7
1.4
 2.1
1.1
 4.7
0.8
 1.1
 2.6
 1.7
0.7
46 LOC7480043 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 7480043 POPTR_002G053000v3 3.0 3.0
 1.5
1.4
 3.3
3.2
 4.0
 4.1
 4.9
 1.8
47 LOC7480895 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial 7480895 POPTR_008G172700v3 3.0 3.5
 1.8
1.7
 1.0
0.8
 1.3
 0.9
 2.3
 -0.4
48 LOC7480776 chlorophyll a-b binding protein CP24 10A, chloroplastic 7480776 POPTR_003G020400v3 3.0 2.9
 5.9
5.6
 10.2
7.2
 4.9
 11.4
 4.1
3.7
 5.1
49 LOC7478401 photosystem I reaction center subunit VI, chloroplastic 7478401 POPTR_003G052500v3 3.0 3.2
 5.4
5.4
 8.0
5.7
 9.4
 13.7
7.8
 8.2
6.9
 5.5
50 LOC7486675 pentatricopeptide repeat-containing protein At1g10910, chloroplastic 7486675 POPTR_001G211300v3 3.0 3.2
 0.3
 0.8
 1.0
 -0.2
 -0.2
 -0.1
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