Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.4   7453644   synaptotagmin-1 
 ppo-r.3   7453644   synaptotagmin-1 
 ppo-m.4   7453644   synaptotagmin-1 
 ppo-u.4   7472122   synaptotagmin-2 
 ppo-u.4   7463439   synaptotagmin-3 
 ppo-u.4   7490635   synaptotagmin-2 
 gma-u.4   100819310   synaptotagmin-3 
 gma-u.4   100803978   synaptotagmin-2 
 mtr-u.4   11422973   synaptotagmin-3 
 mtr-u.4   11414595   synaptotagmin-2 
 mtr-u.4   11442815   synaptotagmin-1 
 ath-u.4   SYTA   synaptotagmin A 
 ath-u.4   SYTC   Calcium-dependent lipid-binding (CaLB domain) family protein 
 sly-u.4   101245487   synaptotagmin-3 
 sly-u.4   101264564   synaptotagmin-1 
 sly-u.4   101249535   synaptotagmin-1 
 osa-u.4   9268561   synaptotagmin-2 
 osa-u.4   4341880   synaptotagmin-3 
 osa-u.4   4347715   synaptotagmin-2 

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Top 50 coexpressed genes to 7453644 (ppo-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 pop520   Amino sugar and nucleotide sugar metabolism  3 151 2.39
 pop20   Citrate cycle (TCA cycle)  1 75 -
 pop1250   Biosynthesis of nucleotide sugars  2 114 -
 pop3015   mRNA surveillance pathway  2 168 -
 pop1200   Carbon metabolism  2 345 -

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ppo:LOC7453644 (synaptotagmin-1) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.4
for
7453644
ppo-r.3
for
7453644
ppo-m.4
for
7453644
ppo-u.4
for
7472122
ppo-u.4
for
7463439
ppo-u.4
for
7490635
gma-u.4
for
100819310
gma-u.4
for
100803978
mtr-u.4
for
11422973
mtr-u.4
for
11414595
mtr-u.4
for
11442815
ath-u.4
for
SYTA
ath-u.4
for
SYTC
sly-u.4
for
101245487
sly-u.4
for
101264564
sly-u.4
for
101249535
osa-u.4
for
9268561
osa-u.4
for
4341880
osa-u.4
for
4347715
1 LOC7454354 probable methyltransferase PMT3 7454354 POPTR_005G226000v3 5.9 3.5
 5.5
 2.1
1.1
 0.7
-0.6
 -0.1
-0.6
 0.4
0.2
 3.1
2.9
 0.7
0.1
 -0.5
-0.8
 2.3
2.3
 2.8
1.7
 0.3
-1.9
 1.5
-0.0
 2.5
2.4
 1.4
1.1
 -0.6
 0.1
 0.2
2 LOC7459480 phosphatidylinositol/phosphatidylcholine transfer protein SFH9 7459480 POPTR_002G243000v3 5.8 3.2
 5.7
 1.7
 1.8
 -0.1
 1.7
1.2
 2.1
-0.0
 2.4
 -0.9
 1.6
 -0.7
 0.2
 1.1
 -0.8
 0.1


3 LOC7486641 uncharacterized LOC7486641 7486641 POPTR_001G179000v3 5.5 2.9
 5.6
 0.5
 -0.2
 0.4
 -0.2
-0.6
 2.8
1.5
 0.1
 0.8
 2.6
 2.0
1.7
 -0.1
-0.5
 0.3
 1.8
 0.9


4 LOC7467541 serine/threonine-protein kinase tricorner 7467541 POPTR_008G167800v3 5.4 3.1
 5.2
 0.9
0.8
 2.6
1.9
 0.7
0.4
 1.4
1.2
 2.3
2.1
 1.3
1.0
 0.7
0.7
 2.5
1.9
 1.6
-0.1
 2.2
0.1
 1.7
1.1
 2.6
0.4
 0.9
0.2
 1.4
0.3
 0.8
-0.2
 1.6
1.2
5 LOC7485189 glutamate decarboxylase 7485189 POPTR_012G039000v3 4.9 4.0
 3.5
 1.1
0.4
 0.7
0.6
 0.8
0.7
 1.6
-0.0
 2.1
0.7
 0.7
-0.3
 3.2
1.9
 1.2
0.5
 3.4
-0.1
 -0.1
-0.1
 2.1
1.3
 2.2
0.8
 0.9
0.9
 0.7
-0.1
 1.2
0.7
 1.7
0.7
6 LOC7485151 UDP-arabinose 4-epimerase 1 7485151 POPTR_011G156100v3 4.8 3.0
 4.4
 2.1
1.8
 2.8
0.5
 0.3
-0.5
 1.7
1.0
 2.0
0.8
 0.3
-0.2
 0.7
0.5
 1.8
-0.6
 -0.3
-0.5
 1.0
0.1
 2.1
0.4
 1.2
0.6
 0.5
0.1
 1.2
1.2
 1.1
0.1
 1.9
1.7
7 LOC7475961 cullin-1 7475961 POPTR_010G023800v3 4.8 2.3
 5.1
 2.9
2.8
 1.6
1.1
 1.2
0.2
 1.3
1.0
 1.7
1.5
 2.2
0.8
 1.3
0.7
 4.6
3.0
 2.7
 0.1
 0.9
-0.1
 3.2
2.2
 1.1
0.6
 1.5
1.1
 0.2
-0.5
 2.7
0.5
8 LOC7493904 WEB family protein At3g02930, chloroplastic 7493904 POPTR_013G079000v3 4.8 4.8
 2.5
 1.2
1.2
 0.2
0.1
 1.0
0.3
 0.7
0.1
 1.2
0.4
 0.3
-0.6
 2.3
1.3
 3.0
2.6
 2.0
1.1
 -0.3
-0.3
 0.2
-0.6
 3.6
1.1
 0.6
0.2
 0.9
 0.2
 1.3
9 LOC7461819 AP-4 complex subunit mu 7461819 POPTR_002G105100v3 4.7 3.0
 4.2
 3.0
 0.4
 0.9
 1.2
0.8
 1.7
1.6
 0.7
-0.2
 -0.1
-0.8
 3.3
1.4
 2.9
 -0.8
 -0.4
 2.8
 -0.0
 1.4
 0.0
 1.9
10 LOC7491038 casein kinase 1-like protein HD16 7491038 POPTR_019G034500v3 4.6 3.4
 3.8
 3.3
1.7
 1.9
1.4
 0.6
0.5
 0.8
0.5
 1.6
1.1
 1.2
1.0
 1.0
0.6
 4.0
2.5
 1.6
1.0
 0.9
0.5
 0.8
0.5
 2.5
2.4
 0.4
0.3
 1.3
1.2
 0.6
-0.2
 2.1
2.1
11 LOC7484713 tip elongation aberrant protein 1 7484713 POPTR_012G062100v3 4.6 1.2
 5.9
 -0.2
-0.5
 1.2
0.2
 0.3
0.1
 1.0
0.6
 0.6
-0.0
 -0.7
 1.0
 -0.4
 -0.6
 0.5
 0.0
 -0.3
 0.1


12 LOC7465423 ribosomal RNA small subunit methyltransferase, mitochondrial 7465423 POPTR_018G018900v3 4.6 0.8
 6.2
 0.7
 -1.2
 0.2
 0.5
-0.1
 -0.4
-0.5
 -0.6
 -1.0
 0.2
 -0.2
 1.9
 -1.5
 0.5
 1.0
 -1.0
 -0.4
 -0.4
13 LOC7496644 glucose-6-phosphate 1-dehydrogenase, cytoplasmic 7496644 POPTR_017G070200v3 4.6 1.2
 5.8
 1.8
1.8
 0.8
0.7
 -0.1
-0.6
 0.3
0.2
 1.0
0.8
 1.2
-0.5
 1.0
-0.5
 1.5
1.1
 1.6
0.3
 -0.3
-0.3
 0.8
 2.1
 -0.3
 0.5
-0.4
 -0.0
-0.5
 0.6
0.1
14 LOC7467082 dynamin-related protein 5A 7467082 POPTR_001G090600v3 4.5 3.0
 3.9
 2.6
2.4
 1.7
1.0
 0.8
0.5
 0.6
0.4
 2.0
2.0
 1.4
1.2
 -0.3
-0.5
 4.8
2.9
 1.8
1.7
 1.0
-0.3
 2.9
1.1
 4.4
3.4
 1.3
1.0
 0.8
0.6
 0.7
0.1
 1.8
1.5
15 LOC7468462 3-phosphoinositide-dependent protein kinase 2 7468462 POPTR_010G232800v3 4.5 2.9
 4.0
 1.5
-0.1
 2.5
1.2
 0.2
0.1
 0.0
-0.4
 2.8
2.2
 0.9
 -0.8
 2.2
 2.3
0.6
 1.0
-0.4
 0.6
-1.4
 0.0
-0.5
 1.0
-0.1
 0.3
 -0.0
 3.3
16 LOC7491167 alpha-L-fucosidase 1 7491167 POPTR_009G006900v3 4.5 3.7
 3.1
 3.2
 2.3
 -0.6
 -0.0
 -1.1
 0.0
 1.6
 1.5
 0.4
 0.1
 0.4
 3.5
 -0.5


17 LOC7470814 CSC1-like protein ERD4 7470814 POPTR_001G358300v3 4.4 2.1
 4.7
 -0.3
 0.1
 0.5
 -0.0
-1.4
 4.4
4.0
 -0.6
 3.7
 1.3
 4.3
 0.6
 1.2
 1.8
 0.9
 -0.4
 1.9
 4.5
18 LOC7472476 protein FATTY ACID EXPORT 3, chloroplastic 7472476 POPTR_016G137200v3 4.4 3.2
 3.5
 0.2
-0.5
 0.1
-0.8
 0.3
-0.5
 -0.3
-0.3
 -0.2
-0.6
 -0.5
 0.3
 0.6
 2.0
 -0.5
 -1.5
 0.8
 -0.2
 -0.6
 -1.9
 -1.6
19 LOC7458243 probable serine/threonine-protein kinase SIS8 7458243 POPTR_002G214400v3 4.4 2.0
 4.8
 0.9
0.9
 0.9
0.2
 0.8
-0.2
 1.1
1.0
 3.5
1.9
 0.9
0.3
 0.6
-2.8
 2.9
1.9
 0.4
0.3
 1.6
-0.2
 0.5
0.3
 0.7
-0.6
 0.4
-0.1
 1.0
-0.3
 -0.2
-1.6
 1.2
0.7
20 LOC7475950 xyloglucan 6-xylosyltransferase 2 7475950 POPTR_010G025300v3 4.4 5.5
0.9
0.4
 0.4
0.3
 0.3
-0.1
 -0.2
-0.2
 2.2
1.8
 1.1
-0.2
 -0.6
-0.7
 1.9
1.3
 3.0
0.1
 0.7
-2.5
 0.3
 1.1
 0.6
 -0.9
 0.7
 0.8
21 LOC7472347 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A 7472347 POPTR_011G109700v3 4.3 2.2
 4.5
 1.5
 1.3
 0.2
 -0.6
-0.9
 -0.1
-0.4
 1.3
-0.2
 -0.1
-0.3
 1.1
0.7
 -0.0
 -0.8
 0.2
-0.0
 0.4
-0.3
 -0.3
-1.4
 -0.7
 -0.7
 -0.2
22 LOC7479055 calcium-dependent protein kinase 7479055 POPTR_004G015500v3 4.3 3.4
 3.3
 0.8
0.5
 1.3
0.9
 1.3
1.0
 -0.1
-0.4
 2.0
1.7
 1.0
0.8
 2.1
0.7
 1.6
1.1
 2.0
0.2
 1.7
0.6
 2.4
0.2
 3.4
3.1
 1.6
0.7
 -0.7
 0.6
 1.6
23 LOC7483508 coatomer subunit beta'-2 7483508 POPTR_003G056300v3 4.2 2.8
 3.7
 2.8
2.6
 0.4
0.1
 1.1
0.7
 0.3
0.1
 1.9
1.4
 0.9
0.3
 -1.4
-1.8
 4.7
4.0
 1.3
0.9
 -0.2
-0.6
 0.5
0.2
 3.0
1.7
 1.0
0.7
 0.8
0.4
 -1.1
-1.2
 2.5
2.1
24 LOC7467583 UDP-glucuronic acid decarboxylase 1 7467583 POPTR_016G080500v3 4.2 2.9
 3.6
 2.1
1.5
 1.3
0.2
 0.3
0.2
 1.1
1.0
 1.3
0.8
 1.6
0.8
 0.4
-0.4
 3.6
3.5
 2.1
1.1
 0.2
-0.0
 1.7
0.4
 1.6
1.0
 0.3
0.1
 -0.1
-0.3
 1.4
1.1
 1.5
1.1
25 LOC7463712 peptidyl-prolyl cis-trans isomerase CYP57 7463712 POPTR_018G061700v3 4.2 1.8
 4.7
 0.5
-0.9
 1.7
1.3
 0.2
-0.5
 -0.3
 -0.0
 0.7
 0.7
 1.3
 0.2
 -0.7
 -0.5
 2.1
 0.3
 1.7
 1.6
 1.1
26 LOC7485083 heterogeneous nuclear ribonucleoprotein 1 7485083 POPTR_001G361300v3 4.2 2.0
 4.4
 2.9
2.2
 1.6
1.3
 0.2
0.0
 1.1
0.8
 0.3
0.2
 0.7
0.4
 -0.2
-0.3
 4.2
2.9
 1.2
-0.3
 -1.1
-1.5
 2.1
1.0
 0.8
0.8
 0.4
0.3
 -0.5
-0.8
 2.2
1.7
 2.7
2.0
27 LOC7486609 endoplasmic reticulum-Golgi intermediate compartment protein 3 7486609 POPTR_005G168800v3 4.2 2.2
 4.3
 2.8
 -0.1
 0.9
 -0.6
-0.8
 1.9
1.8
 1.7
0.4
 -0.3
-1.1
 2.6
2.0
 0.3
0.1
 0.6
-0.8
 0.8
0.1
 1.6
0.2
 0.5
0.0
 2.1
0.1
 -0.2
-0.4
 3.2
1.4
28 LOC7478402 golgin candidate 5 7478402 POPTR_003G052100v3 4.2 3.2
 3.3
 3.5
0.2
 1.3
0.8
 0.2
0.0
 -0.1
-0.2
 2.1
2.0
 0.6
 0.1
 3.7
 2.5
 -0.1
 0.9
 2.6
 1.0
 0.8
 -0.4
 2.4
29 LOC7474385 conserved oligomeric Golgi complex subunit 1 7474385 POPTR_010G177200v3 4.2 1.7
 4.7
 1.6
0.4
 0.8
0.0
 0.5
0.3
 0.7
-0.1
 0.7
0.0
 0.3
 -1.0
 3.0
 -0.5
 -0.2
 -0.1
 -0.3
 1.9
 0.7
 -1.2
 0.4
30 LOC7459496 galacturonosyltransferase 8 7459496 POPTR_002G246500v3 4.1 3.2
 3.2
 1.6
1.2
 0.8
0.7
 0.7
0.5
 -0.3
-0.4
 2.4
2.4
 1.3
1.1
 0.7
-0.4
 3.3
2.2
 1.2
0.9
 -1.8
-1.9
 1.6
0.9
 1.9
1.9
 1.3
1.1
 -1.1
 0.1
 1.2
31 LOC7454562 protein NUCLEAR FUSION DEFECTIVE 4 7454562 POPTR_012G098900v3 4.1 1.6
 4.7
 1.7
-0.5
 1.1
-0.6
 -0.1
-0.5
 -0.0
-0.0
 2.0
0.5
 0.8
-0.4
 0.9
-0.4
 2.9
-0.8
 0.9
0.2
 0.8
-0.2
 2.7
1.1
 0.9
-0.1
 0.4
0.1
 0.6
-1.2
 0.1
-0.6
 0.2
-0.4
32 LOC7489406 conserved oligomeric Golgi complex subunit 3 7489406 POPTR_010G138900v3 4.1 1.6
 4.7
 -0.1
 1.4
 0.5
 0.1
-0.3
 1.8
1.6
 0.1
 -1.0
 3.8
 0.6
 0.8
 -0.6
 1.8
 0.5
 0.3
 -1.6
 1.1
33 LOC7453804 probable serine/threonine-protein kinase WNK3 7453804 POPTR_015G084600v3 4.0 2.3
 3.9
 2.7
1.0
 0.2
-0.3
 0.1
-0.3
 2.9
2.2
 2.0
0.1
 1.1
 -0.3
 5.4
 -0.6
 -1.0
 0.8
-0.2
 2.6
1.7
 1.1
0.2
 1.5
 -0.5
 2.2
34 LOC7475783 patellin-3 7475783 POPTR_019G079300v3 4.0 3.6
 2.6
 1.3
0.5
 1.3
0.8
 -0.2
-0.2
 1.4
1.0
 1.0
0.7
 1.6
0.2
 0.5
0.3
 2.5
1.8
 3.3
-0.3
 0.8
-0.5
 1.1
0.6
 1.8
0.8
 0.5
0.3
 0.2
-0.7
 1.2
-1.0
 1.5
0.1
35 LOC7464664 WD repeat-containing protein 26 homolog 7464664 POPTR_005G206600v3 4.0 2.0
 4.2
 2.6
2.5
 2.5
0.5
 0.1
-0.2
 1.2
0.1
 1.5
1.4
 0.3
0.3
 0.3
-0.7
 3.1
1.9
 1.7
 0.9
 0.4
0.1
 1.3
0.7
 0.1
-0.0
 0.7
 -0.6
 0.5
36 LOC7493205 uncharacterized LOC7493205 7493205 POPTR_003G178400v3 4.0 2.6
 3.6
 2.9
1.6
 0.7
0.5
 0.0
-0.4
 1.0
0.8
 2.5
1.7
 0.3
 1.2
 5.0
 3.4
 -0.2
 -0.2
 2.5
 -0.9
 0.3
 0.1
 1.8
37 LOC7461759 DEAD-box ATP-dependent RNA helicase 8 7461759 POPTR_002G157500v3 4.0 1.7
 4.5
 1.3
0.4
 0.0
-0.1
 1.6
0.6
 0.7
0.0
 0.7
0.6
 0.4
-0.3
 0.2
-0.3
 3.3
3.2
 2.0
1.6
 0.8
-0.3
 -0.7
-1.0
 2.9
1.3
 -0.0
-0.2
 0.7
-0.0
 0.2
-0.3
 1.3
0.5
38 LOC7457924 uncharacterized LOC7457924 7457924 POPTR_008G051300v3 4.0 1.7
 4.5
 -0.7
-2.9
 1.2
0.5
 0.2
-0.1
 1.4
0.4
 0.3
0.2
 0.5
 0.4
 0.6







39 LOC7495150 annexin D1 7495150 POPTR_002G095600v3 4.0 3.8
 2.3
 1.7
1.0
 2.1
0.3
 0.5
-0.0
 0.4
0.3
 2.8
0.2
 1.6
-0.4
 1.9
1.8
 2.6
1.2
 1.9
0.5
 1.6
-0.5
 0.9
0.9
 2.0
1.0
 -0.3
-0.7
 0.1
-0.5
 0.5
-0.2
 1.9
1.3
40 LOC7464542 PP2A regulatory subunit TAP46 7464542 POPTR_015G012200v3 4.0 3.4
 2.7
 3.5
1.3
 0.7
-0.1
 0.3
-0.8
 -0.6
-1.1
 1.6
0.6
 0.3
 -0.2
 2.9
 2.1
 0.5
 -0.3
 3.0
 1.5
 0.8
-0.3
 -0.1
-0.5
 1.1
1.0
41 LOC7473125 protein HGV2 7473125 POPTR_007G034200v3 4.0 1.1
 5.0
 1.5
1.2
 0.1
-0.3
 0.0
0.0
 0.3
-0.2
 2.9
2.1
 0.2
 -0.6
 1.2
 1.9
 -0.1
 -1.5
 1.7
 0.3
 -0.2
 -0.9
 -0.6
42 LOC7462240 aminopeptidase M1 7462240 POPTR_006G224500v3 3.9 1.7
 4.3
 1.2
 1.7
 0.5
 0.9
-0.0
 0.2
0.1
 1.2
 0.1
 3.2
 3.1
 0.5
 -0.3
 2.4
 -0.2
 0.4
0.2
 -0.5
-0.8
 1.2
0.4
43 LOC7475069 uncharacterized LOC7475069 7475069 POPTR_001G183600v3 3.9 3.5
 2.5
 -0.6
-1.3
 -0.6
-2.0
 0.4
0.1
 0.8
0.8
 1.9
1.1
 -0.0
-1.6
 4.8
0.3
 1.1
1.0

0.6
 2.1
 1.4
 0.4
-0.4
 0.8
0.8
 1.0
-0.8
44 LOC7455712 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial 7455712 POPTR_014G195700v3 3.9 2.4
 3.6
 3.0
1.3
 0.7
0.2
 1.2
1.1
 0.2
-0.0
 0.5
0.2
 1.0
 -1.3
 3.5
 1.2
 -0.4
 0.5
 2.4
 -0.0
 -0.0
 -0.1
 2.0
45 LOC7482232 WPP domain-interacting tail-anchored protein 2 7482232 POPTR_010G135900v3 3.9 4.5
0.9
-0.7
 1.7
1.0
 0.1
-0.3
 1.1
0.1
 0.8
0.7
 0.2
0.2
 2.3
-1.2
 0.7
-0.1
 0.9
0.6
 0.7
0.7
 0.6
0.6
 1.3
0.3
 1.0
-0.7
 1.0
-0.0
 0.5
-0.8
 3.0
1.2
46 LOC7458383 bifunctional purple acid phosphatase 26 7458383 POPTR_018G024800v3 3.8 1.4
 4.6
 2.2
1.0
 1.0
0.1
 -0.3
-0.3
 0.3
 1.3
 0.1
 2.6
 2.5
 2.6
 0.6
 0.1
-0.2
 1.8
0.8
 1.9
0.1
 0.8
 -0.8
 -0.1
47 LOC7483106 nicotinate phosphoribosyltransferase 2 7483106 POPTR_007G045400v3 3.8 0.4
 5.5
 1.1
0.0
 1.7
1.2
 -0.5
-0.6
 1.3
 1.1
 1.2
 -1.2
 1.9
 1.9
0.1
 0.1
-0.8
 0.6
-0.6
 -0.5
-2.2
 0.9
-0.9
 0.7
0.3
 0.8
0.3
 2.3
1.1
48 LOC7475964 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 7475964 POPTR_010G022300v3 3.8 2.3
 3.6
 2.8
1.9
 1.8
0.8
 1.3
0.6
 0.5
0.0
 0.2
0.1
 1.0
 -0.2
 3.9
 2.3
 -0.2
 0.3
 1.2
 0.7
 1.4
 -0.2
 1.1
49 LOC7491076 F-box/kelch-repeat protein At5g60570 7491076 POPTR_019G042100v3 3.8 3.1
 2.8
 4.0
2.2
 0.6
0.5
 0.0
-0.2
 1.2
0.8
 0.9
0.8
 1.8
 0.4
 1.5
 0.1
 -1.7


-0.3
 -0.1
 -0.5
50 LOC7475119 phospholipase D alpha 1 7475119 POPTR_001G193000v3 3.8 3.3
 2.6
 1.6
-0.1
 0.7
-1.7
 1.0
0.7
 0.6
-0.4
 1.8
1.0
 1.0
0.5
 1.1
0.5
 2.3
1.5
 3.7
-1.2
 0.1
-0.0
 1.3
0.5
 4.9
2.1
 0.6
0.5
 -0.0
-0.3
 -0.4
-0.6
 0.5
0.2
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