Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.4   7487775   protein LOW PSII ACCUMULATION 1, chloroplastic 
 ppo-r.3   7487775   protein LOW PSII ACCUMULATION 1, chloroplastic 
 ppo-m.4   7487775   protein LOW PSII ACCUMULATION 1, chloroplastic 
 gma-u.4   100793204   protein LOW PSII ACCUMULATION 1, chloroplastic 
 gma-u.4   100784188   protein LOW PSII ACCUMULATION 1, chloroplastic 
 mtr-u.4   11435276   protein LOW PSII ACCUMULATION 1, chloroplastic 
 ath-u.4   LPA1   tetratricopeptide repeat (TPR)-containing protein 
 sly-u.4   101252117   protein LOW PSII ACCUMULATION 1, chloroplastic 
 osa-u.4   4326021   protein LOW PSII ACCUMULATION 1, chloroplastic 

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Top 50 coexpressed genes to 7487775 (ppo-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 pop3010   Ribosome  8 431 5.49
 pop970   Aminoacyl-tRNA biosynthesis  3 73 3.29
 pop30   Pentose phosphate pathway  1 73 -
 pop3018   RNA degradation  2 136 -
 pop1230   Biosynthesis of amino acids  2 300 -

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ppo:LOC7487775 (protein LOW PSII ACCUMULATION 1, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.4
for
7487775
ppo-r.3
for
7487775
ppo-m.4
for
7487775
gma-u.4
for
100793204
gma-u.4
for
100784188
mtr-u.4
for
11435276
ath-u.4
for
LPA1
sly-u.4
for
101252117
osa-u.4
for
4326021
1 LOC7495117 30S ribosomal protein S13, chloroplastic 7495117 POPTR_002G088300v3 5.4 3.1
 5.1
 1.8
1.2
 4.0
3.5
 5.8
 3.4
 4.5
 4.1
2 LOC7485852 30S ribosomal protein S1, chloroplastic 7485852 POPTR_010G150300v3 5.0 2.7
 5.0
 2.6
2.3
 4.7
2.9
 5.9
 3.0
 5.5
1.6
 5.5
3 LOC7486793 uncharacterized LOC7486793 7486793 POPTR_014G102400v3 5.0 3.6
 4.0
 -0.3
-0.4
 0.4
0.1
 2.3
 2.9
 4.0
 1.4
4 LOC7488360 50S ribosomal protein L15, chloroplastic 7488360 POPTR_008G121100v3 4.9 2.9
 4.7
 2.4
 4.9
 4.0
 3.3
 5.8
 3.8
5 LOC7480435 acetylornithine aminotransferase, mitochondrial 7480435 POPTR_005G095800v3 4.9 1.7
 5.7
 -0.6
-0.9
 -0.3
-1.4
 0.5
 2.3
 2.8
 -0.3
-0.5
6 LOC7493902 uncharacterized sugar kinase slr0537 7493902 POPTR_013G078600v3 4.7 2.3
 5.0
 1.4
1.2
 2.5
2.2
 2.9
 7.7
 2.8
 2.1
7 LOC7470229 magnesium-chelatase subunit ChlI, chloroplastic 7470229 POPTR_004G053400v3 4.7 3.5
 3.7
 1.6
1.6
 3.3
2.7
 4.0
0.0
 2.5
1.8
 4.3
 3.0
8 LOC7493864 uncharacterized LOC7493864 7493864 POPTR_013G070700v3 4.6 2.1
 5.0
 1.0
 1.3
 2.7
 3.9
 3.6
 3.5
9 LOC7455917 50S ribosomal protein L34, chloroplastic 7455917 POPTR_011G064800v3 4.5 3.1
 3.8
 2.7
2.3
 5.1
4.0
 5.3
 2.2
 4.8
 3.7
10 LOC7469956 2-Cys peroxiredoxin BAS1, chloroplastic 7469956 POPTR_016G072100v3 4.5 4.1
 2.8
 2.0
2.0
 3.9
3.3
 3.7
3.4
 4.2
1.1
 4.4
1.4
 3.0
11 LOC7460042 uncharacterized LOC7460042 7460042 POPTR_010G054800v3 4.4 2.6
 4.2
 0.7
 0.1
 0.5
 1.1
 3.1
 0.6
0.1
12 LOC7484534 leucine--tRNA ligase, chloroplastic/mitochondrial 7484534 POPTR_011G009600v3 4.4 3.5
 3.2
 3.4
 5.8
 2.8
 5.4
 5.0
 2.5
13 LOC7487082 peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic 7487082 POPTR_012G058700v3 4.3 2.8
 3.9
 0.5
0.3
 1.9
1.9
 2.3
 1.7
 0.7
 1.1
14 LOC7470815 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 7470815 POPTR_001G358400v3 4.3 2.3
 4.3
 3.7
 4.5
 1.9
 2.5
 1.8
 0.8
15 LOC7497563 tryptophan--tRNA ligase, chloroplastic/mitochondrial 7497563 POPTR_003G158000v3 4.3 1.3
 5.3
 5.9
3.3
 5.2
3.0
 2.2
 2.5
 5.5
 3.7
16 LOC7467495 preprotein translocase subunit SECE1 7467495 POPTR_008G153400v3 4.3 3.4
 3.2
 1.9
 2.5
 2.9
 4.1
 3.6
 0.5
17 LOC7491063 polyribonucleotide nucleotidyltransferase 1, chloroplastic 7491063 POPTR_019G040100v3 4.2 2.3
 4.2
 3.9
 4.9
 3.6
 3.3
 1.4
 3.8
18 LOC18097699 uncharacterized LOC18097699 18097699 POPTR_004G120900v3 4.2 4.5
3.2
2.6
 7.6
4.0
 3.6
 4.6
 3.1
 0.5
19 LOC7496022 uncharacterized LOC7496022 7496022 POPTR_001G022500v3 4.2 3.1
 3.3
 2.7
 2.8
 3.2
 2.7
 2.4
 2.6
20 LOC7478596 protein disulfide-isomerase LQY1, chloroplastic 7478596 POPTR_009G155700v3 4.2 3.7
 2.7
 1.1
 3.3
 -0.2
 0.6
 2.9
 1.4
21 LOC7457787 rhodanese-like domain-containing protein 11, chloroplastic 7457787 POPTR_015G086100v3 4.1 2.8
 3.4
 3.0
 2.7
 2.0
 2.3
 3.5
 2.1
22 LOC7471127 rhodanese-like domain-containing protein 4A, chloroplastic 7471127 POPTR_002G239800v3 4.0 2.2
 4.0
 3.3
2.4
 4.2
4.0
 1.8
 3.9
 3.3
 2.3
23 LOC7463032 uncharacterized LOC7463032 7463032 POPTR_004G122600v3 4.0 1.8
 4.4
 3.2
2.6
 7.6
4.0
 3.6
 4.6
 3.1
 0.5
24 LOC7476328 uncharacterized LOC7476328 7476328 POPTR_004G059300v3 4.0 1.3
 4.9


1.7
 -0.6
 1.3
25 LOC7495790 50S ribosomal protein L27, chloroplastic 7495790 POPTR_001G329500v3 4.0 2.9
 3.2
 1.6
1.1
 3.6
3.4
 3.7
 3.0
 4.7
 4.9
26 LOC7462939 translation initiation factor IF-1, chloroplastic 7462939 POPTR_018G038900v3 3.9 1.9
 4.1
 2.1
1.4
 3.8
2.2
 1.7
 3.7
 3.2
0.9
 0.4
27 LOC7485247 APO protein 2, chloroplastic 7485247 POPTR_006G183900v3 3.9 3.3
 2.7
 2.6
 4.5
 2.0
0.6
 3.3
 2.7
 1.0
28 LOC7477682 uncharacterized LOC7477682 7477682 POPTR_005G240800v3 3.9 2.9
 3.1
 2.1
 1.5
 1.6
 1.6
 3.5
 1.5
1.3
29 LOC18095420 50S ribosomal protein L13, chloroplastic 18095420 POPTR_001G384600v3 3.9 4.1
2.0
 3.4
 4.3
 2.9
 5.3
5.3
 4.6
30 LOC18094557 light-harvesting complex-like protein 3 isotype 1, chloroplastic 18094557 POPTR_001G151300v3 3.9 4.6
0.9
0.6
 2.4
2.2
 4.0
 3.0
1.9
 3.0
2.4
 1.5
31 LOC7493392 APO protein 2, chloroplastic 7493392 POPTR_018G106400v3 3.9 2.8
 3.1
 2.6
 4.5
 2.0
0.6
 3.3
 2.7
 1.0
32 LOC7489580 methionine--tRNA ligase, chloroplastic/mitochondrial 7489580 POPTR_010G207300v3 3.8 2.7
 3.2
 5.2
4.0
 5.6
3.6
 2.6
 3.8
 4.8
 2.3
33 LOC7454889 30S ribosomal protein 2, chloroplastic 7454889 POPTR_009G065900v3 3.8 3.7
 2.3
 2.1
1.7
 3.9
3.4
 4.1
 2.4
2.2
34 LOC7485104 30S ribosomal protein S10, chloroplastic 7485104 POPTR_001G364100v3 3.8 2.1
 3.8
 3.0
1.7
 5.6
3.5
 3.3
 2.5
 4.5
35 LOC7484701 probable ribose-5-phosphate isomerase 4, chloroplastic 7484701 POPTR_011G155500v3 3.8 2.4
 3.5
 4.2
 6.3
 4.4
 1.4
 4.5
36 LOC7478095 ycf49-like protein 7478095 POPTR_001G114800v3 3.8 2.4
 3.5
 3.2
0.8
 4.9
2.6
4.0
 3.9
2.2
37 LOC7475379 GTP-binding protein OBGC, chloroplastic 7475379 POPTR_010G022400v3 3.8 2.9
 3.0
 1.7
 3.6
 3.8
 3.6
 3.0
 1.6
38 LOC7458776 uncharacterized LOC7458776 7458776 POPTR_018G083900v3 3.8 4.1
 1.8
 3.9
3.5
 4.6
4.4
 3.9
 3.4
 3.1
 3.6
39 LOC7485654 peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic 7485654 POPTR_005G254900v3 3.8 3.0
 2.9
 2.1
 2.7
 3.0
 5.2
 2.6
 2.7
40 LOC7482376 probable zinc metalloprotease EGY1, chloroplastic 7482376 POPTR_013G064700v3 3.7 2.8
 2.9
 0.9
0.5
 3.9
3.5
 0.6
 3.2
 3.7
 1.6
41 LOC7480150 CDK5RAP1-like protein 7480150 POPTR_007G018500v3 3.7 1.9
 3.8
 2.2
1.9
 2.9
2.9
 1.3
 4.0
 2.5
 2.9
42 LOC7471559 psbP domain-containing protein 5, chloroplastic 7471559 POPTR_006G246500v3 3.7 1.6
 4.0
 3.2
2.9
 5.7
4.9
 3.4
 3.2
 3.9
 2.1
43 LOC7492297 50S ribosomal protein L4, chloroplastic 7492297 POPTR_006G221100v3 3.6 1.9
 3.7
 3.0
2.3
 3.8
3.5
 2.1
 4.0
 4.7
 2.0
44 LOC7483977 probable plastid-lipid-associated protein 13, chloroplastic 7483977 POPTR_016G045900v3 3.6 3.6
 2.0
 1.8
1.5
 2.1
1.2
 2.7
 3.4
2.9
 2.9
1.5
 1.4
45 LOC7496826 carbonic anhydrase 2 7496826 POPTR_001G348900v3 3.6 1.0
 4.6
 0.6
-0.1
 1.4
0.8
 1.3
0.9
 2.1
0.9
 2.2
-0.3
 1.5
46 LOC7487522 cell division protein FtsZ homolog 1, chloroplastic 7487522 POPTR_001G359500v3 3.6 3.4
 2.2
 2.4
1.6
 2.8
1.0
 2.4
-0.0
 1.0
 2.6
0.8
 -0.4
47 LOC7477773 probable polyamine aminopropyl transferase 7477773 POPTR_001G073000v3 3.6 1.7
 3.8
 1.9
 3.9
 4.5
 2.1
 4.0
 2.1
48 LOC7458159 uncharacterized LOC7458159 7458159 POPTR_003G124200v3 3.6 2.3
 3.3
 3.8
 4.6
 2.1
 3.5
 3.0
 3.0
49 LOC7458369 nucleoside diphosphate kinase 2, chloroplastic 7458369 POPTR_012G093800v3 3.6 3.0
 2.5
 3.4
1.8
 4.0
3.1
 1.7
 3.1
 4.8
2.9
 3.1
50 LOC7496556 photosynthetic NDH subunit of lumenal location 5, chloroplastic 7496556 POPTR_003G167700v3 3.6 2.5
 3.0
 3.1
1.8
 4.7
2.3
 2.4
 2.5
 4.8
 2.5
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