Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.4   7488611   probable pectate lyase 8 
 ppo-r.3   7488611   probable pectate lyase 8 
 ppo-m.4   7488611   probable pectate lyase 8 
 ppo-u.4   112323533   probable pectate lyase 18 
 ppo-u.4   18100132   probable pectate lyase 12 
 gma-u.4   100794814   pectate lyase 
 gma-u.4   100815062   probable pectate lyase 12 
 gma-u.4   100789303   probable pectate lyase 12 
 mtr-u.4   25489517   probable pectate lyase 18 
 mtr-u.4   25485548   probable pectate lyase 18 
 mtr-u.4   25483947   probable pectate lyase 12 
 ath-u.4   AT4G13210   Pectin lyase-like superfamily protein 
 ath-u.4   AT5G04310   Pectin lyase-like superfamily protein 
 sly-u.4   101257697   probable pectate lyase 12 
 sly-u.4   101254639   probable pectate lyase 8 
 sly-u.4   101264933   probable pectate lyase 5 
 osa-u.4   4348800   probable pectate lyase 5 
 osa-u.4   4335013   probable pectate lyase 8 

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Top 50 coexpressed genes to 7488611 (ppo-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 pop61   Fatty acid biosynthesis  1 61 -
 pop20   Citrate cycle (TCA cycle)  1 75 -
 pop40   Pentose and glucuronate interconversions  2 158 -
 pop10   Glycolysis / Gluconeogenesis  1 171 -
 pop1240   Biosynthesis of cofactors  2 305 -

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ppo:LOC7488611 (probable pectate lyase 8) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.4
for
7488611
ppo-r.3
for
7488611
ppo-m.4
for
7488611
ppo-u.4
for
112323533
ppo-u.4
for
18100132
gma-u.4
for
100794814
gma-u.4
for
100815062
gma-u.4
for
100789303
mtr-u.4
for
25489517
mtr-u.4
for
25485548
mtr-u.4
for
25483947
ath-u.4
for
AT4G13210
ath-u.4
for
AT5G04310
sly-u.4
for
101257697
sly-u.4
for
101254639
sly-u.4
for
101264933
osa-u.4
for
4348800
osa-u.4
for
4335013
1 LOC7469382 probable pectate lyase 8 7469382 POPTR_014G178100v3 5.7 3.4
 5.3
 14.4
7.3
 2.6
2.6
 10.2
3.0
 2.2
2.2
 4.7
2.4
 7.2
5.9
 1.8
1.4
 6.0
4.9
 4.8
3.3
 1.9
1.2
 2.8
2.8
 7.5
3.7
 0.7
0.4
 1.7
 1.7
2 LOC7469768 probable RNA-binding protein ARP1 7469768 POPTR_008G044700v3 4.6 4.5
 2.5
 1.1
0.9
 2.1
1.9
 0.9
0.3
 0.3
-0.3
 0.6
0.4
 -0.7
 1.1
 -0.8
 0.0
 -0.0
 -0.6
 -0.5
 -0.5
 1.2
 -0.8
3 LOC7464771 putative glycosyltransferase 7 7464771 POPTR_014G006100v3 4.5 2.4
 4.5
 1.5
1.4
 2.2
1.6
 2.0
0.6
 -0.1
-0.1
 0.8
0.6
 2.9
 2.0
 2.5
 3.0
1.3
 -0.4
-0.8
 1.7
0.5
 2.5
2.1
 1.3
0.0
 0.4
 0.3
4 LOC7474931 glucomannan 4-beta-mannosyltransferase 2 7474931 POPTR_009G149700v3 4.4 2.9
 3.9
 3.3
2.6
 2.9
1.6
 1.0
1.0
 0.9
0.9
 0.8
0.6
 1.0
0.7
 1.5
0.1
 1.6
0.9
 4.8
1.8
 1.1
0.1
 1.9
1.2
 5.7
3.2
 0.4
0.2
 1.4
0.6
 2.4
1.1
5 LOC7472298 calmodulin-binding receptor kinase CaMRLK 7472298 POPTR_011G067900v3 4.3 1.6
 5.0
 0.8
-0.6
 0.9
-0.6
 0.9
0.8
 1.9
1.1
 1.8
0.9
 0.9
-1.5
 0.1
-1.0
 1.0
-0.8
 -0.3
 -2.6
 0.5
 1.4
 0.4
 1.4
0.1
 0.2
-0.3
6 LOC7468072 probably inactive leucine-rich repeat receptor-like protein kinase IMK2 7468072 POPTR_006G104300v3 4.2 3.2
 3.3
 0.9
0.2
 2.8
2.4
 1.5
1.3
 2.6
2.0
 1.8
1.1
 3.2
1.2
 1.8
1.5
 6.0
2.9
 1.9
1.0
 0.1
-0.5
 1.8
1.6
 0.3
0.3
 0.3
-0.2
 1.1
0.6
 -0.5
-0.5
7 LOC7478066 scarecrow-like protein 28 7478066 POPTR_001G109400v3 4.2 3.1
 3.4
 0.7
0.6
 1.7
1.2
 1.0
0.9
 1.7
0.9
 0.8
0.4
 2.1
 1.0
 5.0
 1.8
 0.7
 0.5
 0.3
 0.9
 -0.1
 -1.4
8 LOC7482294 uncharacterized LOC7482294 7482294 POPTR_009G058800v3 4.1 3.1
 3.3
 3.4
1.6
 3.0
2.1
 2.1
0.6
 0.6
-0.7
 0.1
0.0
 2.6
0.3
 1.7
0.4
 2.3
1.6
 1.5
1.4
 0.6
0.2
 3.0
0.7
 3.6
1.2
 -0.8
-0.9
 1.2
 2.5
9 LOC7497386 putative cell wall protein 7497386 POPTR_013G144200v3 4.1 3.2
 3.1
 1.9
 0.7












10 LOC7491311 heat shock factor-binding protein 1 7491311 POPTR_014G131700v3 4.1 2.7
 3.6
 0.4
-0.5
 2.9
0.4
 -0.2
-0.2
 0.1
-0.3
 0.6
0.0
 1.5
-0.1
 0.7
0.4
 2.4
0.4
 0.3
 0.4
 0.5
-0.1
 3.5
0.2
 -0.5
-0.9
 -0.3
 -0.3
11 LOC7483981 enoyl-[acyl-carrier-protein] reductase [NADH] 1, chloroplastic 7483981 POPTR_T111000v3 4.0 1.2
 4.9
 0.9
0.6
 2.2
1.9
 -0.2
-0.4
 0.2
-0.2
 1.7
1.2
 1.8
1.8
 1.1
0.8
 2.6
2.0
 0.8
 0.2
 0.8
0.8
 2.1
0.5
 -0.3
-0.6
 1.2
-0.4
 1.5
-0.4
12 LOC7492059 cyclin-D3-1 7492059 POPTR_001G301800v3 3.9 2.7
 3.2
 0.9
0.7
 2.6
2.3
 1.6
1.3
 2.2
1.6
 1.3
1.2
 2.1
1.8
 0.5
0.5
 4.7
3.0
 2.5
0.6
 0.3
-1.7
 3.8
3.2
 1.4
1.1
 -0.1
-1.3

13 LOC7468920 glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic 7468920 POPTR_016G043400v3 3.9 4.3
0.7
0.3
 1.0
0.6
 0.7
0.4
 0.1
-0.1
 1.5
0.7
 -0.0
-0.1
 0.2
-0.2
 0.3
-0.1
 0.9
0.1
 -0.7
-1.0
 1.7
-0.3
 1.8
1.0
 0.1
0.0
 1.1
0.6
 2.5
1.0
14 LOC7494605 basic leucine zipper 61 7494605 POPTR_019G091900v3 3.8 2.9
 3.1
 0.7
0.5
 1.8
1.3
 -0.1
-0.2
 0.2
-0.1
 0.7
0.6
 0.3
-0.3
 0.7
0.6
 0.6
-0.1
 0.2
0.1
 0.3
-0.3
 0.3
0.1
 2.2
1.1
 0.5
-0.1
 1.1
0.8
 1.7
-0.3
15 LOC7492400 polygalacturonase 1 beta-like protein 3 7492400 POPTR_010G040800v3 3.8 3.7
1.4
0.9
 3.6
3.1
 2.4
1.9
 1.9
1.4
 1.0
0.8
 2.8
1.2
 1.9
0.7
 3.7
0.9
 1.6
0.9
 1.0
0.3
 1.7
1.5
 1.1
0.2
 1.2
0.3
 1.0
-0.2
 2.7
0.6
16 LOC7494740 kinesin-like protein KIN-10A 7494740 POPTR_008G169000v3 3.8 3.7
 2.1
 0.7
0.1
 1.8
1.2
 1.8
1.7
 2.1
1.9
 0.9
0.7
 1.7
 1.2
 5.0
 2.2
 -0.7
 1.5
0.9
 1.2
-0.0
 -0.4
-0.7
 -0.4
 -0.9
17 LOC7487259 expansin-A6 7487259 POPTR_006G086100v3 3.8 2.2
 3.6
 3.7
3.2
 5.3
4.1
 4.2
3.2
 2.7
2.0
 1.7
1.4
 5.2
3.7
 1.8
1.7
 5.0
4.3
 1.1
1.1
 2.2
0.7
 5.1
2.0
 4.5
2.7
 1.2
0.2
 1.6
0.2
 3.6
0.8
18 LOC7463842 DNA topoisomerase 2 7463842 POPTR_001G264000v3 3.7 2.6
 3.1
 1.5
0.5
 1.8
1.8
 1.5
1.3
 2.3
1.6
 0.7
0.4
 1.3
 1.3
 4.6
 1.3
 -0.4
 1.1
 0.5
 -0.3
 0.2
 -0.2
19 LOC7454913 kinesin-like protein KIN-5B 7454913 POPTR_006G082900v3 3.7 2.1
 3.5
 0.1
 0.7
 1.7
1.0
 1.1
0.6
 0.5
0.3
 1.6
 1.1
 2.5
 0.8
 -0.7
 0.7
 0.1
 -0.2
 -0.2
 -0.6
20 LOC7458744 ABC transporter G family member 32 7458744 POPTR_018G074500v3 3.6 1.4
 4.1
 0.3
 0.6
 0.5
0.4
 -0.6
-1.1
 1.7
1.2
 0.0
 -0.5
 -0.3
 0.5
 -0.2
 0.2
-0.4
 2.1
1.8
 -0.1
-0.2
 0.4
 2.2
21 LOC7479275 probable inactive receptor kinase At4g23740 7479275 POPTR_001G095200v3 3.5 1.0
 4.5
 1.1
1.0
 1.9
1.7
 0.5
0.4
 1.2
1.2
 1.8
1.3
 2.3
2.3
 1.7
0.3
 3.9
2.0
 0.8
 -0.8
 -0.8
 1.0
 0.2
 2.2
 0.0
22 LOC7495299 kinesin-like protein KIN-14C 7495299 POPTR_011G031200v3 3.5 3.1
 2.4
 0.7
0.4
 1.6
1.3
 1.2
1.0
 2.1
1.8
 0.8
0.7
 3.0
2.1
 1.0
0.8
 4.3
4.1
 2.4
2.2
 -0.3
-0.6
 2.3
-0.1
 0.3
-0.6
 -0.9
-1.5
 0.9
0.6
 1.2
-0.4
23 LOC112323253 polygalacturonase 1 beta-like protein 3 112323253 POPTR_010G040900v3 3.5 3.4
1.4
0.9
 3.6
3.1
 2.4
1.9
 1.9
1.4
 1.0
0.8
 2.8
1.2
 1.9
0.7
 3.7
0.9
 1.6
0.9
 1.0
0.3
 1.7
1.5
 1.1
0.2
 1.2
0.3
 1.0
-0.2
 2.7
0.6
24 LOC7467900 uncharacterized LOC7467900 7467900 POPTR_017G094200v3 3.5 1.3
 4.2
 1.2
 1.9
 1.4
0.3
 1.2
0.4
 1.1
0.2


1.7
 -0.3
 0.6
 -0.5
 -2.0

25 LOC7470037 uncharacterized LOC7470037 7470037 POPTR_018G113700v3 3.5 1.4
 4.0
 0.4
 0.4
 0.5
-1.4
 -0.7
-0.7
 0.4
0.4
 0.4
 0.4
 -0.2
 -0.1
-1.2
 0.6
-0.3
 1.0
-0.7
 -0.0
-0.5
 -0.4
-0.6

26 LOC7485667 cyclin-dependent kinase B2-1 7485667 POPTR_005G257500v3 3.5 2.2
 3.1
 0.2
0.2
 2.4
2.2
 1.5
1.5
 2.1
1.4
 0.8
0.3
 1.9
 1.1
 5.0
 1.2
0.7
 0.4
-0.2
 1.9
 1.2
 -1.9
 0.4
 -0.8
27 LOC7478856 cellulose synthase-like protein D5 7478856 POPTR_002G200300v3 3.5 2.3
 3.0
 0.4
-0.1
 3.0
0.8
 2.1
0.6
 2.1
1.1
 0.9
-0.0
 2.4
 1.5
 4.3
 2.1
 -0.3
 1.3
 0.5
 -0.7
 1.0
 0.2
28 LOC7461937 protein IQ-DOMAIN 14 7461937 POPTR_003G047800v3 3.4 3.4
0.2
 1.8
 0.4
0.2
 2.1
1.3
 1.8
1.7
 0.9
0.3
 0.9
-1.0
 2.7
1.5
 1.1
1.0
 0.3
0.2
 1.4
0.2
 0.3
-1.0
 0.1
-0.5
 0.7
0.6
 0.4
0.3
29 LOC7460104 kinesin-like protein KIN-12E 7460104 POPTR_009G156000v3 3.4 2.9
 2.4
 0.9
0.6
 2.0
1.0
 0.4
0.3
 1.9
1.6
 0.7
0.2
 1.0
 1.2
 2.9
 1.2
 -0.3
 2.0
 0.0
 -1.5
 -0.2
 -0.5
30 LOC7459028 ethylene-responsive transcription factor SHINE 2 7459028 POPTR_018G028000v3 3.4 3.6
 1.7
 1.9
0.5
 1.1
0.4
 1.3
0.6
 -0.1
-0.3
 1.2
0.4




-0.2
-0.9
 -0.1
-0.9
 -0.0
-1.1
 0.3
 1.7
31 LOC7489155 early nodulin-like protein 1 7489155 POPTR_006G264600v3 3.4 2.2
 3.0
 0.8
0.7
 3.6
3.0
 1.5
1.2
 2.0
1.2
 1.2
0.9
 3.4
 1.1
 5.3
 2.8
2.0
 0.6
-0.8
 1.9
0.5
 0.4
-0.3
 -0.3
-1.0
 0.3
 -0.2
32 LOC7496885 L-ascorbate oxidase homolog 7496885 POPTR_002G013700v3 3.4 1.6
 3.6
 1.9
1.8
 2.4
1.3
 1.6
1.0
 0.6
0.4
 2.8
2.0
 1.7
1.5
 2.1
1.8
 2.0
1.8
 2.8
2.4
 3.2
0.8
 1.1
1.0
 2.0
1.6
 0.4
0.2
 2.1
1.8
 2.9
1.3
33 LOC18105668 probable inactive receptor kinase At4g23740 18105668 POPTR_015G023500v3 3.4 3.4
1.1
1.0
 1.9
1.7
 0.5
0.4
 1.2
1.2
 1.8
1.3
 2.3
2.3
 1.7
0.3
 3.9
2.0
 0.8
 -0.8
 -0.8
 1.0
 0.2
 2.2
 0.0
34 LOC7496606 classical arabinogalactan protein 1 7496606 POPTR_017G050300v3 3.3 3.3
 1.9














35 LOC7470690 protein IQ-DOMAIN 1 7470690 POPTR_006G226600v3 3.3 1.9
 3.3
 0.4
0.3
 2.8
2.3
 1.1
1.0
 2.0
1.8
 2.0
1.4
 2.0
1.6
 1.6
1.0
 5.7
2.2
 2.1
1.4
 -0.4
-1.3
 2.7
0.9
 0.6
0.6
 0.1
-0.5
 0.7
0.7
 -0.2
-1.0
36 LOC7488722 probably inactive leucine-rich repeat receptor-like protein kinase IMK2 7488722 POPTR_016G126300v3 3.3 2.1
 3.0
 0.9
0.2
 2.8
2.4
 1.5
1.3
 2.6
2.0
 1.8
1.1
 3.2
1.2
 1.8
1.5
 6.0
2.9
 1.9
1.0
 0.1
-0.5
 1.8
1.6
 0.3
0.3
 0.3
-0.2
 1.1
0.6
 -0.5
-0.5
37 LOC7487255 kinesin-like protein KIN-10B 7487255 POPTR_006G085300v3 3.3 1.8
 3.3
 -0.0
 2.1
 1.7
0.7
 2.1
1.2
 -0.1
-0.1
 2.2
 1.6
 3.7
 1.8
 0.6
 2.3
 0.5
 -0.7
 -0.2
 -0.9
38 LOC7498143 laccase-13 7498143 POPTR_019G124300v3 3.3 0.6
 4.6
 2.4
2.0
 1.3
0.6
 2.1
2.1
 2.0
1.0
 1.0
1.0
 1.2
-0.3
 -0.1
-1.0
 1.1
0.3
 0.4
-0.1
 0.1
-0.1
 -0.1
-0.2
 0.2
0.2
 -0.4
-0.5
 1.0
0.7
 0.9
0.6
39 LOC7489478 uncharacterized LOC7489478 7489478 POPTR_018G114600v3 3.3 1.9
 3.2
 0.7
0.4
 2.4
1.1
 1.7
0.8
 1.0
0.7
 1.1
0.7
 2.2
 1.1
 5.1

1.6
 -0.1
 -1.2
 0.2
 -0.8
40 LOC7497422 laccase-3 7497422 POPTR_013G152700v3 3.3 1.0
 4.1
 2.4
2.0
 1.3
0.6
 2.1
2.1
 2.0
1.0
 1.0
1.0
 1.2
-0.3
 -0.1
-1.0
 1.1
0.3
 0.4
-0.1
 0.1
-0.1
 -0.1
-0.2
 0.2
0.2
 -0.4
-0.5
 1.0
0.7
 0.9
0.6
41 LOC7485701 expansin-A6 7485701 POPTR_001G240900v3 3.3 3.4
 1.6
 3.7
3.2
 5.3
4.1
 4.2
3.2
 2.7
2.0
 1.7
1.4
 5.2
3.7
 1.8
1.7
 5.0
4.3
 1.1
1.1
 2.2
0.7
 5.1
2.0
 4.5
2.7
 1.2
0.2
 1.6
0.2
 3.6
0.8
42 LOC7485915 dihydrolipoyl dehydrogenase 2, chloroplastic 7485915 POPTR_008G107600v3 3.3 1.3
 3.7
 0.9
0.1
 0.7
0.4
 -0.4
-0.4
 -0.1
-0.3
 1.6
1.6
 1.5
-0.5
 2.1
0.9
 1.4
0.7
 0.8
0.2
 0.5
0.1
 0.3
-0.2
 1.3
0.4
 -0.5
-0.9
 -0.0
-1.0
 -0.4
-1.0
43 LOC7489888 CSC1-like protein At3g21620 7489888 POPTR_002G226800v3 3.3 2.3
 2.7
 1.1
0.9
 3.3
2.3
 1.2
1.1
 -0.2
-0.3
 0.3
0.0
 0.6
-1.0
 0.1
0.0
 1.1
-1.4
 0.7
0.6
 0.6
0.3
 0.6
0.4
 0.7
0.3
 2.2
-0.0
 0.6
-0.2
 0.5
-0.2
44 LOC7485573 uncharacterized LOC7485573 7485573 POPTR_011G045700v3 3.3 3.3
0.6
0.3
 2.6
1.8
 0.3
0.1
 0.1
0.1
 1.3
1.1
 0.4
0.2
 0.5
0.1
 1.8
1.2
 2.0
1.6
 0.3
-0.0
 2.6
0.2
 1.1
0.3
 -0.8
-1.0

45 LOC18106802 protein E6 18106802 POPTR_017G015700v3 3.3 3.7
5.6
3.6
 1.7
1.2
 6.6
6.3
 1.6
0.3
 -0.0
-0.2
 4.2
 -0.3
 5.0
 1.3
 -0.3




46 LOC7481246 probable pectate lyase 8 7481246 POPTR_003G175900v3 3.3 2.3
 2.8
 14.4
7.3
 2.6
2.6
 10.2
3.0
 2.2
2.2
 4.7
2.4
 7.2
5.9
 1.8
1.4
 6.0
4.9
 4.8
3.3
 1.9
1.2
 2.8
2.8
 7.5
3.7
 0.7
0.4
 1.7
 1.7
47 LOC7472571 DNA replication licensing factor MCM3 7472571 POPTR_004G131600v3 3.3 1.7
 3.3
 -0.4
 2.1
 0.5
0.3
 0.8
0.6
 0.4
-0.4
 1.4
 2.8
 4.4
 1.4
 -0.4
 0.2
 1.7
 -0.3
 -0.3
 -0.3
48 LOC7465838 scarecrow-like protein 28 7465838 POPTR_003G122400v3 3.2 2.8
 2.2
 0.7
0.6
 1.7
1.2
 1.0
0.9
 1.7
0.9
 0.8
0.4
 2.1
 1.0
 5.0
 1.8
 0.7
 0.5
 0.3
 0.9
 -0.1
 -1.4
49 LOC7457792 endoglucanase 8 7457792 POPTR_008G132700v3 3.2 2.9
 2.1
 2.7
0.9
 4.2
2.1
 1.8
1.3
 2.9
2.3
 1.7
1.4
 3.9
 0.3
 7.1
 3.3
 1.5
 1.9
 7.1
 0.1
 1.2
0.5
 3.6
2.2
50 LOC7460975 cyclin-A1-1 7460975 POPTR_005G181400v3 3.2 1.6
 3.3
 0.0
-0.1
 3.0
1.0
 1.7
1.2
 2.9
1.6
 1.0
0.7
 1.6
 1.5
 3.9
 2.4
 -0.8
 0.7
 0.6
 -1.3
 0.5
-0.3
 0.3
0.2
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