Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.4   7495210   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ppo-r.3   7495210   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ppo-m.4   7495210   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ppo-u.4   7481408   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 gma-u.4   100778991   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 gma-u.4   100794695   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 mtr-u.4   11420621   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 mtr-u.4   11421148   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 ath-u.4   GUN1   s uncoupled 1 
 sly-u.4   101265032   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 
 osa-u.4   4352523   pentatricopeptide repeat-containing protein At2g31400, chloroplastic 

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Top 50 coexpressed genes to 7495210 (ppo-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 pop4144   Endocytosis  2 206 -
 pop3040   Spliceosome  2 261 -
 pop4141   Protein processing in endoplasmic reticulum  3 283 -
 pop1240   Biosynthesis of cofactors  2 305 -
 pop1200   Carbon metabolism  2 345 -

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ppo:LOC7495210 (pentatricopeptide repeat-containing protein At2g31400, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.4
for
7495210
ppo-r.3
for
7495210
ppo-m.4
for
7495210
ppo-u.4
for
7481408
gma-u.4
for
100778991
gma-u.4
for
100794695
mtr-u.4
for
11420621
mtr-u.4
for
11421148
ath-u.4
for
GUN1
sly-u.4
for
101265032
osa-u.4
for
4352523
1 LOC7493902 uncharacterized sugar kinase slr0537 7493902 POPTR_013G078600v3 8.1 6.9
 5.4
 3.3
 1.1
0.7
 2.5
2.1
 0.9
 4.6
 6.7
 3.2
 3.2
2 LOC7475379 GTP-binding protein OBGC, chloroplastic 7475379 POPTR_010G022400v3 6.3 4.8
 4.8
 2.9
 1.8
 3.6
 1.1
 5.6
 4.0
 3.6
 0.9
3 LOC7492455 protein MITOFERRINLIKE 1, chloroplastic 7492455 POPTR_005G189600v3 6.1 3.8
 5.6
 2.1
 4.8
 4.7
 0.9
 -0.1
 1.5
 3.9
 0.8
4 LOC18103824 chaperone protein ClpC, chloroplastic 18103824 POPTR_012G105900v3 6.1 6.7
2.7
1.9
 4.8
4.1
 5.0
4.0
 2.3
1.0
 2.7
2.0
 5.2
4.3
 6.3
1.4
 4.3
1.7
5 LOC7486889 pentatricopeptide repeat-containing protein At5g04810, chloroplastic 7486889 POPTR_008G017400v3 5.8 6.5
2.9
2.0
 1.9
1.4
 2.3
2.2
 1.2
 2.7
 2.4
 3.7
0.9
 0.4
6 LOC7459800 fruit protein pKIWI502 7459800 POPTR_010G116500v3 5.7 4.9
 3.8
 2.7
0.8
 1.3
-0.9
 2.4
-1.6
 0.1
 0.6
 4.3
 2.6
 0.5
7 LOC7488715 protein TIC 56, chloroplastic 7488715 POPTR_016G123900v3 5.6 4.1
 4.5
 3.0
 3.8
2.4
 6.0
3.2
 1.0
 1.7
 2.3
 4.0
8 LOC7479044 pentatricopeptide repeat-containing protein At3g53700, chloroplastic 7479044 POPTR_004G013300v3 5.6 4.5
 4.1
 3.0
 3.5
 5.0
 1.7
 4.6
 2.9
 2.2
 1.4
9 LOC7478844 blue-light photoreceptor PHR2 7478844 POPTR_002G204000v3 5.5 6.0
3.0
1.2
 3.0
2.4
 3.5
2.8
 0.5
 1.1
 2.9
 4.1
 2.1
10 LOC7455363 28 kDa ribonucleoprotein, chloroplastic 7455363 POPTR_014G105800v3 5.4 4.0
 4.4
 1.5
 0.9
0.6
 2.9
1.0

2.6
-0.2
11 LOC7491161 ruBisCO large subunit-binding protein subunit alpha 7491161 POPTR_009G009300v3 5.4 4.0
 4.3
 2.2
0.7
 3.4
2.9
 3.8
3.5
 1.9
0.5
 1.6
1.2
 3.1
0.9
 2.6
0.6
 1.1
0.2
12 LOC7481408 pentatricopeptide repeat-containing protein At2g31400, chloroplastic 7481408 POPTR_002G193900v3 5.4 6.1
5.4
 8.4
 8.4
 2.3
 2.3


13 LOC7482390 zinc finger protein VAR3, chloroplastic 7482390 POPTR_013G067200v3 5.4 5.9
3.8
 4.3
2.5
 5.5
4.1
 1.6
 1.6
 2.9
 3.0
 1.2
14 LOC7487664 probable ribose-5-phosphate isomerase 3, chloroplastic 7487664 POPTR_013G039400v3 5.3 5.5
 2.7
 2.2
1.8
 1.9
1.5
 3.5
2.2
 1.5
 2.5
 3.6
 3.0
 2.5
15 LOC7480773 protein RETICULATA-RELATED 1, chloroplastic 7480773 POPTR_003G019600v3 5.3 5.3
 2.7
 2.1
0.7
 3.4
2.7
 6.0
4.5
 1.0
 0.1
 3.5
 5.1
3.6
 2.7
16 LOC7465382 protein TOC75-3, chloroplastic 7465382 POPTR_003G158100v3 5.2 4.7
 3.3
 2.7
1.8
 5.3
3.8
 4.4
4.2
 4.1
2.4
 2.8
-1.3
 5.2
 3.7
 -0.0
-0.1
17 LOC7456642 chaperone protein ClpC, chloroplastic 7456642 POPTR_015G105100v3 5.2 4.6
 3.4
 2.7
1.9
 4.8
4.1
 5.0
4.0
 2.3
1.0
 2.7
2.0
 5.2
4.3
 6.3
1.4
 4.3
1.7
18 LOC7498132 protein TIC110, chloroplastic 7498132 POPTR_019G127000v3 5.1 4.7
 3.2
 3.3
2.7
 4.0
3.7
 6.4
4.9
 2.9
1.1
 3.0
-1.2
 6.3
 5.8
 1.3
19 LOC7482236 heat shock protein 90-5, chloroplastic 7482236 POPTR_010G136800v3 5.1 4.6
 3.3
 3.2
1.9
 2.6
2.4
 3.3
2.7
 1.8
 1.9
 2.8
 3.5
 0.9
0.1
20 LOC7457516 pentatricopeptide repeat-containing protein At2g15820, chloroplastic 7457516 POPTR_009G106800v3 5.1 4.1
 3.8
 1.8
 2.5
1.7
 3.0
1.4
 1.8
 1.4
 4.6
 1.5
 1.6
21 LOC7465297 pentatricopeptide repeat-containing protein At3g09650, chloroplastic 7465297 POPTR_016G085300v3 5.1 5.0
 2.8
 2.9
 2.4
 3.9
 0.7
 3.3
 3.4
 2.7
 1.8
1.4
22 LOC7465530 elongation factor G-2, chloroplastic 7465530 POPTR_003G113500v3 5.1 3.3
 4.6
 3.0
 4.2
3.7
 4.1
3.3
 1.0
 4.5
 3.1
 3.4
 4.5
23 LOC18111154 stromal 70 kDa heat shock-related protein, chloroplastic 18111154 POPTR_003G006300v3 5.0 5.4
2.7
1.8
 3.0
2.4
 4.4
3.2
 2.8
 2.9
 4.8
4.0
 3.9
0.9
 2.6
1.9
24 LOC7477772 protein TOC75-3, chloroplastic 7477772 POPTR_001G072800v3 5.0 5.3
 2.4
 2.7
1.8
 5.3
3.8
 4.4
4.2
 4.1
2.4
 2.8
-1.3
 5.2
 3.7
 -0.0
-0.1
25 LOC7461344 chaperonin 60 subunit beta 2, chloroplastic 7461344 POPTR_003G222400v3 4.9 3.9
 3.6
 2.1
2.0
 4.7
4.1
 5.0
4.4
 2.5
2.4
 3.3
2.4
 2.7
1.8
 3.9
3.1
 0.8
0.7
26 LOC7482394 protein GrpE 7482394 POPTR_013G067900v3 4.9 4.9
 2.6
 1.8
 3.7
3.5
 4.3
4.1
 1.7
 1.8
 1.9
 3.1
 0.4
27 LOC7478412 probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic 7478412 POPTR_003G050600v3 4.9 3.9
 3.6
 2.9
 4.1
3.2
 4.7
4.5
 2.6
 3.6
 6.1
 4.9
28 LOC7453963 uncharacterized LOC7453963 7453963 POPTR_002G146100v3 4.8 3.7
 3.7
 1.4
 1.4
 1.5
 -0.3
 0.1
 2.4
 2.9
 0.1
29 LOC7455200 chaperone protein dnaJ A6, chloroplastic 7455200 POPTR_005G073900v3 4.8 2.9
 4.5
 2.6
2.4
 3.9
3.6
 5.6
5.3
 1.4
 3.1
 3.7
3.2
 2.8
 2.6
1.6
30 LOC7490200 chaperone protein dnaJ A6, chloroplastic 7490200 POPTR_007G094900v3 4.8 4.4
 3.0
 2.6
2.4
 3.9
3.6
 5.6
5.3
 1.4
 3.1
 3.7
3.2
 2.8
 2.6
1.6
31 LOC18100990 lipoyl synthase, mitochondrial-like 18100990 POPTR_007G078400v3 4.8 5.5
2.5
1.5
 2.9
2.0
 2.6
1.7
 0.3
 1.1
 2.7
 2.4
 2.1
32 LOC7465591 cysteine desulfurase, mitochondrial 7465591 POPTR_007G000600v3 4.7 4.6
 2.6
 0.4
 2.1
1.9
 1.8
1.0
 1.6
 0.4
 1.2
 1.9
 1.1
33 LOC7459166 translation initiation factor IF-2, chloroplastic 7459166 POPTR_001G436300v3 4.7 4.1
 3.1
 3.6
2.7
 4.5
4.2
 5.3
3.7
 1.4
 4.8
 5.0
 4.6
 2.9
34 LOC7459515 ylmG homolog protein 1-2, chloroplastic 7459515 POPTR_002G250200v3 4.7 2.7
 4.5
 0.7
 2.6
2.5
 3.4
2.2
 0.6
 1.1
 3.6
0.5
 2.8
 2.1
35 LOC7476814 plastid lipid-associated protein 3, chloroplastic 7476814 POPTR_001G137900v3 4.7 5.1
2.5
1.6
 2.9
 4.3
 -0.7
 1.0
 3.0
 1.1
-0.2
 0.2
36 LOC7466088 bifunctional monothiol glutaredoxin-S16, chloroplastic 7466088 POPTR_016G119200v3 4.6 3.0
 4.1
 0.5
 1.6
1.3
 2.0
1.3
 -0.5
 1.0
 5.6
 3.8
 0.6
37 LOC18098943 zeta-carotene desaturase, chloroplastic/chromoplastic 18098943 POPTR_005G050700v3 4.6 4.7
1.8
1.6
 2.9
1.6
 4.6
3.4
 0.5
 0.8
 3.9
 6.9
 2.8
38 LOC7487213 uncharacterized LOC7487213 7487213 POPTR_019G025100v3 4.6 4.1
 2.9
 2.6
 3.8
3.7
 4.4
4.2
 2.3
 4.0
 4.5
 3.7
 1.9
39 LOC7464673 probable transmembrane GTPase FZO-like, chloroplastic 7464673 POPTR_005G209200v3 4.6 3.9
 3.2
 1.7
 1.3
1.3
 3.0
2.4
 2.4
 3.1
 1.7
 2.1
 1.4
40 LOC7479258 elongation factor Tu, chloroplastic 7479258 POPTR_003G121600v3 4.5 3.1
 3.8
 2.3
2.0
 4.1
3.1
 5.0
4.4
 2.4
 4.6
5.0
4.2
 1.5
41 LOC7457790 28 kDa ribonucleoprotein, chloroplastic 7457790 POPTR_015G086500v3 4.5 4.0
 2.9
 2.0
1.8
 3.1
2.7
 4.9
4.7
 2.2
0.6
 2.3
2.1
 3.3
2.9
 3.6
 3.0
1.1
42 LOC7454684 formin-like protein 5 7454684 POPTR_015G090200v3 4.5 5.3
2.6
1.8
 -0.6
 0.9
 0.7
0.0
 0.5
-0.6
 4.1
 1.1
 -1.6
43 LOC7491929 protein ORANGE-LIKE, chloroplastic 7491929 POPTR_006G210500v3 4.5 3.7
 3.2
 2.0
 2.4
1.4
 2.9
1.4
 -1.2
 1.4
 2.4
 2.5
 0.9
44 LOC7466273 uncharacterized LOC7466273 7466273 POPTR_014G138200v3 4.5 4.4
 2.5
 1.4
0.9
 1.0
0.4
 1.8
1.3
 0.2
-0.5
 1.3
0.6
 1.0
0.9
 0.7
 -0.2
45 LOC18103579 peroxisome biogenesis protein 5 18103579 POPTR_011G170000v3 4.5 5.1
2.7
-0.0
 1.5
1.0
 0.7
0.7
 0.0
 -0.4
 3.0
 2.4
 1.9
46 LOC18098323 stromal 70 kDa heat shock-related protein, chloroplastic 18098323 POPTR_004G224400v3 4.5 4.7
2.7
1.8
 3.0
2.4
 4.4
3.2
 2.8
 2.9
 4.8
4.0
 3.9
0.9
 2.6
1.9
47 LOC7470701 glycine dehydrogenase (decarboxylating), mitochondrial 7470701 POPTR_006G229300v3 4.4 3.5
 3.4
 2.2
 2.5
2.0
 2.8
2.8
 -0.6
 1.2
 3.6
2.6
 2.6
 1.8
1.1
48 LOC7454005 UV-B-induced protein At3g17800, chloroplastic 7454005 POPTR_012G042400v3 4.4 2.1
 4.7
 1.4
-0.6
 2.6
1.3
 3.2
2.4
 -0.1
-0.2
 2.1
0.6
 2.3
1.7
 2.7
 1.4
49 LOC7460042 uncharacterized LOC7460042 7460042 POPTR_010G054800v3 4.4 2.9
 3.9
 2.1
 1.6
 0.9
 1.2
 1.5
 2.0
 1.2
 0.4
0.3
50 LOC7456788 30S ribosomal protein S5, chloroplastic 7456788 POPTR_004G045700v3 4.4 3.3
 3.5
 0.6
 3.4
2.5
 5.0
3.4
 0.1
 2.0
 2.1
 3.8
 1.9
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