Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.4   GRAS4   GRAS4 
 sly-r.5   GRAS4   GRAS4 
 sly-u.4   101246721   scarecrow-like protein 14 
 sly-u.4   101246637   scarecrow-like protein 14 
 ath-u.4   AT2G29065   GRAS family transcription factor 
 ath-u.4   AT2G29060   GRAS family transcription factor 
 gma-u.4   121173030   scarecrow-like protein 31 
 gma-u.4   100815586   uncharacterized LOC100815586 
 gma-u.4   100807788   scarecrow-like protein 9 
 ppo-u.4   7488109   scarecrow-like protein 14 
 ppo-u.4   7465105   scarecrow-like protein 14 
 mtr-u.4   25487898   scarecrow-like protein 30 
 mtr-u.4   25498496   scarecrow-like protein 9 
 mtr-u.4   25487897   scarecrow-like protein 11 
 osa-u.4   4333775   scarecrow-like protein 9 
 osa-u.4   4336820   scarecrow-like protein 9 

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Top 50 coexpressed genes to GRAS4 (sly-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sly4626   Plant-pathogen interaction  7 187 6.51
 sly4016   MAPK signaling pathway - plant  4 153 3.30
 sly360   Phenylalanine metabolism  2 50 2.19
 sly400   Phenylalanine, tyrosine and tryptophan biosynthesis  1 48 -
 sly1230   Biosynthesis of amino acids  1 228 -

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sly:GRAS4 (GRAS4) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.4
for
GRAS4
sly-r.5
for
GRAS4
sly-u.4
for
101246721
sly-u.4
for
101246637
ath-u.4
for
AT2G29065
ath-u.4
for
AT2G29060
gma-u.4
for
121173030
gma-u.4
for
100815586
gma-u.4
for
100807788
ppo-u.4
for
7488109
ppo-u.4
for
7465105
mtr-u.4
for
25487898
mtr-u.4
for
25498496
mtr-u.4
for
25487897
osa-u.4
for
4333775
osa-u.4
for
4336820
1 WRKY31 WRKY transcription factor 31 101255501 7.7 8.3
 0.6
-0.5
 5.8
5.1
 0.3
0.0
 0.9
-0.2
 0.7
0.6
 5.1
3.2
 0.5
0.4
 3.3
2.9
 1.2
1.1
 3.2
2.6
 0.5
-0.0
 3.7
3.0
 -0.4
-0.4
 0.3
-0.4
2 WRKY40 WRKY transcription factor 40 100301944 7.5 8.5
 0.8
-0.1
 5.0
1.4
 0.2
-0.1
 0.2
0.0
 0.2
0.1
 2.5
2.4
 0.8
0.7
 1.7
1.2
 1.0
0.5
 1.7
1.5
 0.8
-0.2
 3.1
3.0
 0.2
 -1.0
3 LOC101258155 zinc finger CCCH domain-containing protein 29 101258155 7.2 8.0
 2.3
-0.2
 5.3
0.7
 0.4
0.3
 0.5
0.1
 2.0
1.3
 5.7
4.7
 2.0
1.5
 4.9
2.5
 2.0
1.4
 2.5
2.2
 0.4
0.1
 4.2
4.0
 0.5
 -1.6
4 LOC101246637 scarecrow-like protein 14 101246637 6.9 7.7
 1.3
0.9
 6.9
1.1
 2.5
2.3
 2.5
2.3
 4.7
2.6
 7.4
4.2
 5.3
2.1
 4.1
2.6
 2.7
2.6
 5.7
5.2
 0.7
0.6
 9.6
6.1
 1.1
 1.1
5 LOC101259436 probable serine/threonine-protein kinase PBL3 101259436 6.7 7.2
 1.5
-0.5
 5.0
1.5
 2.5
2.2
 1.1
1.1
 -0.3
-0.4
 1.8
1.7
 0.3
0.3
 1.9
0.9
 1.2
1.2
 -0.8
 0.4
 -0.2
 0.3
-0.3
 0.7
0.1
6 LOC101055516 Hop-interacting protein THI026 101055516 6.6 7.1
 1.4
1.1
 4.7
4.5
 -0.0
-1.0
 0.4
-0.8
 -0.7
-0.9
 3.1
2.2
 -1.4
-1.5
 1.7
0.7
 1.0
0.9
 2.3
 -0.7
 3.6
 -0.3
-0.4
 -0.5
-0.6
7 ERF5 ethylene response factor 5 108511945 6.2 7.0
 -0.3
-0.5
 3.7
3.6
 0.3
0.3
 0.4
0.2
 0.8
0.6
 5.6
5.6
 -0.3
-0.4
 1.9
1.7
 0.9
0.5
 2.6
1.8
 0.1
-0.3
 5.0
4.1

8 MPK3 mitogen-activated protein kinase 3 543880 6.0 6.4
 1.6
-0.0
 5.7
0.5
 1.2
-0.1
 0.2
0.0
 0.1
0.1
 5.0
3.8
 1.1
0.6
 0.8
0.4
 1.4
0.9
 0.7
-0.7
 -0.7
-0.9
 2.9
0.5
 0.3
0.2
 0.0
-0.4
9 WRKY41 WRKY transcription factor 41 100736444 5.9 6.0
 -0.4
-0.7
 4.7
4.1
 0.9
-0.8
 0.7
-0.3
 1.3
1.3
 2.7
2.6
 1.0
0.5
 3.3
2.0
 1.9
1.8
 1.4
1.0
 0.8
0.5
 3.2
1.8
 0.7
-0.1
 0.2
-1.0
10 LOC101259340 protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial 101259340 5.9 6.1
 -0.2
-0.6
 2.6
-0.6
 -0.2
-0.3
 0.3
-0.4
 0.0
-0.3
 3.7
1.6
 1.0
0.7
 0.4
0.2
 2.6
-0.9
 1.1
0.8
 0.1
-0.4
 3.7
-0.4
 0.7
 -0.9
11 LOC101268787 WRKY transcription factor 33B 101268787 5.5 5.6
 0.6
-0.5
 5.8
5.1
 0.3
0.0
 0.9
-0.2
 0.7
0.6
 5.1
3.2
 0.5
0.4
 3.3
2.9
 1.2
1.1
 3.2
2.6
 0.5
-0.0
 3.7
3.0
 -0.4
-0.4
 0.3
-0.4
12 LOC101257491 ankyrin repeat-containing protein At5g02620 101257491 5.5 5.9
 1.9
1.6
 4.2
1.3
 2.5
1.2
 1.2
0.3
 1.4
1.4
 1.4
1.4
 1.8
1.4
 2.5
0.4
 1.7
0.9
 -0.3
 1.8
 -0.5
 0.5
-0.3
 2.6
1.0
13 LOC101265719 ubiquitin ligase SlATL31 101265719 5.3 5.4
 1.3
-0.5
 4.8
3.0
 1.6
1.0
 0.6
0.5
 0.2
-0.1
 4.0
3.3
 0.3
0.2
 1.9
0.6
 2.9
1.9
 3.0
1.5
 -0.1
-0.3
 3.7
2.9
 0.4
0.1
 0.1
-0.6
14 LOC101249891 putative glycerol-3-phosphate transporter 5 101249891 5.3 5.8
 -0.6
 3.3
 -0.1
 -0.3
 0.7
-0.4
 1.0
0.9
 0.5
0.2
 1.3
 0.0
 0.6
 -0.3
 0.2
 -0.7
 0.2
15 LOC101254410 BTB/POZ domain-containing protein At5g41330-like 101254410 5.2 5.9
 1.0
-0.1
 5.1
2.9
 1.4
 0.8
 -0.8
-0.8
 2.9
1.2
 -1.1
-1.2
 2.0
0.5
 1.5
1.4
 1.5
 0.1
 2.4
 -0.1
 1.9
16 ERF-B13 ethylene response factor B.13 101267548 5.2 5.7













17 LOC101055602 Hop-interacting protein THI039 101055602 5.2 5.3
 0.5
0.1
 6.7
1.9

0.1
-0.2
 1.8
1.8
 1.3
0.9
 2.4
2.2
 1.8
1.6
 -0.1
 0.8
 -0.0
 -0.1
 -0.2
18 LOC101264847 histidine decarboxylase-like 101264847 5.2 5.7













19 LOC101259263 arogenate dehydrogenase 2, chloroplastic 101259263 5.1 5.6
 0.0
-0.4
 4.8
2.2
 -1.0
 -0.1
 -0.3
-0.3
 -0.6
-1.0
 0.7
0.2
 1.2
0.9
 0.4
-1.7
 -0.6
-0.7
 -0.4
-0.8
 -0.2
-0.5
 0.6
0.3
 0.7
-0.2
20 LOC101251823 calcium-binding protein KRP1 101251823 5.0 5.6
 0.9
0.8
 4.4
4.2
 -0.0
-0.7
 0.2
0.0
 0.3
0.1
 3.7
3.5
 0.7
-0.0
 1.0
0.7
 0.5
0.5
 3.0
3.0
 -0.6
-0.8
 4.5
3.5
 -0.1
-0.3
 0.3
-0.3
21 CZFP1 C2H2-type zinc finger protein 100134883 5.0 5.4
 0.1
-0.7
 3.2
3.0
 0.8
0.4
 0.8
0.2
 -0.1
-0.3
 4.6
3.3
 -0.1
-0.2
 1.6
0.9
 1.9
1.0
 1.7
0.5
 0.7
-0.3
 3.3
2.9
 -0.1
-0.4
 1.0
0.4
22 LOC101256835 UPF0496 protein 1 101256835 4.9 5.4













23 AADC1B aromatic amino acid decarboxylase 1B 778255 4.9 5.3













24 LOC101248520 calcium-binding protein PBP1 101248520 4.9 5.5
 0.9
0.8
 4.4
4.2
 -0.0
-0.7
 0.2
0.0
 0.3
0.1
 3.7
3.5
 0.7
-0.0
 1.0
0.7
 0.5
0.5
 3.0
3.0
 -0.6
-0.8
 4.5
3.5
 -0.1
-0.3
 0.3
-0.3
25 LOC101248759 protein SAR DEFICIENT 1 101248759 4.8 5.0
 0.1
-0.4
 3.9
0.4
 -1.3
 -0.6
 1.1
0.3
 2.3
1.0
 0.4
0.1
 1.0
0.8
 -0.0
-0.1
 2.7
2.5
 0.1
0.1
 4.3
3.7
 0.0
 -0.1
26 LOC101260171 RING-H2 finger protein ATL2 101260171 4.8 5.2
 -0.4
-0.8
 4.1
1.7
 0.6
0.1
 0.1
0.1
 -0.1
-0.1
 4.8
0.9
 0.6
0.5
 1.6
1.4
 1.1
0.8
 2.1
-0.1
 0.4
0.3
 4.6
-0.6

27 LOC101265657 uncharacterized LOC101265657 101265657 4.8 5.3













28 LOC101250935 lysine histidine transporter-like 8 101250935 4.8 6.0
 1.9
0.2
 2.1
1.0
 -0.8
 0.2
 0.8
0.7
 2.4
1.9
 0.8
0.5
 0.4
0.1
 0.8
0.7
 1.2
0.4
 0.3
-0.4
 2.3
1.2
 0.6
0.1
 0.4
-0.8
29 LOC101250262 probable calcium-binding protein CML36 101250262 4.7 5.3
 1.4
1.1
 4.7
4.5
 -0.0
-1.0
 0.4
-0.8
 -0.7
-0.9
 3.1
2.2
 -1.4
-1.5
 1.7
0.7
 1.0
0.9
 2.3
 -0.7
 3.6
 -0.3
-0.4
 -0.5
-0.6
30 LOC101261347 uncharacterized LOC101261347 101261347 4.7 5.2
 0.4
0.4
 3.2
3.1
 1.5
1.2
 0.3
0.0
 1.1
0.1
 5.1
4.1
 0.7
0.7
 2.2
1.1
 1.0
0.8
 0.4
0.2
 2.1
1.0
 2.4
1.3
 -0.7
 0.3
31 LOC101247521 uncharacterized LOC101247521 101247521 4.5 4.7
 0.8
 4.0
 1.4
1.2
 0.6
0.2


1.5
-0.9
 0.4
0.1




32 LOC101258270 probable CCR4-associated factor 1 homolog 9 101258270 4.5 4.8
 0.8
0.7
 3.2
0.4
 1.4
-0.4
 1.0
0.0
 0.7
-0.0
 3.9
3.3
 1.0
0.6
 2.7
0.5
 0.7
0.6
 2.0
1.6
 -0.5
-0.6
 3.4
2.5
 -0.4
 -0.0
33 LOC104648424 VQ motif-containing protein 22 104648424 4.4 5.0
 -0.7
 1.9
 1.1
 0.8
 0.8
0.3
 4.1
1.8
 0.1
0.0
 0.5
 1.2
 1.5
 -0.0
 1.8
 -0.1
-0.1
 0.2
-0.4
34 LOC101250181 serine/threonine-protein kinase-like protein CCR4 101250181 4.4 4.6
 0.1
 3.7
 0.2
 -0.6
 0.5
 3.0
 0.4
 0.4
 1.7
 2.4
 0.3
 1.3
 -0.7
-1.0
 2.2
-0.2
35 LOC101261140 B2 protein 101261140 4.4 4.8
 -0.1
-0.3
 4.3
0.8
 0.1
 -0.5
 -0.4
-0.7
 4.1
3.5
 1.5
0.7
 1.8
1.3
 0.8
0.5
 0.8
-1.4
 0.8
0.6
 2.2
0.3
 0.4
-0.3
 1.2
-0.1
36 LOC101256572 uncharacterized LOC101256572 101256572 4.3 4.7













37 LOC101261019 U-box domain-containing protein 28-like 101261019 4.3 4.3
 0.7
0.2
 3.9
1.1
 1.3
1.2
 0.3
0.0
 0.5
0.1
 1.7
1.3
 0.7
0.1
 1.2
0.8
 0.3
-0.0
 1.9
0.5
 -0.4
-0.8
 2.3
1.9
 0.4
-0.1
 -0.2
-1.4
38 MMP1 matrix metalloproteinases protein 3 101055590 4.3 4.4
 0.4
-0.2
 3.9
2.3
 0.7
0.7
 0.1
-0.1
 0.3
-0.1
 3.0
1.1
 0.1
0.0
 2.1
-0.3
 0.6
-0.0
 3.8
0.9
 0.2
0.1
 2.6
0.9
 -0.7
-0.8
 0.1
-0.1
39 LOC101252330 probable receptor-like protein kinase At1g11050 101252330 4.3 4.7
 1.0
 4.2

1.5
0.9
 2.2
1.9
 0.7
0.0
 1.7
1.6
 1.2
0.7
 1.5
0.8
 0.3
-0.4
 1.9
1.2
 0.6
-0.9
 0.8
-0.5
40 LOC101258870 tetraspanin-8-like protein 101258870 4.3 4.9
 0.5
0.3
 3.2
-0.0
 0.1
-0.3
 0.6
-0.0
 -0.2
-0.4
 2.4
-0.5
 0.2
-0.2
 0.7
-0.5
 2.2
-0.2
 -1.5
 0.2
 0.0
 -0.8
-1.3
 1.3
0.6
41 LOC101251639 probable calcium-binding protein CML30 101251639 4.2 4.7
 -0.7
-0.9
 3.2
0.0
 -0.1
 -0.2
 0.4
0.0
 3.1
2.2
 0.3
0.2
 1.5
0.2
 1.3
0.8
 3.0
2.6
 -0.0
-0.1
 3.5
3.4
 0.4
 0.5
42 LOC101247659 uncharacterized N-acetyltransferase p20-like 101247659 4.2 4.6
 1.1
0.5
 3.1
0.8
 1.4
-0.2
 0.8
0.3
 0.6
-0.5
 4.7
1.7
 0.2
-0.9
 1.2
0.1
 0.7
0.2
 2.8
2.2
 -0.5
-0.5
 3.9
2.8
 0.1
-0.4
 0.5
43 AO ascorbate oxidase 778230 4.2 4.4
 -0.4
 3.5
 -0.2
 -0.3


1.0
0.9
 1.3
1.1
 2.5
 -0.2
 2.7
 -0.2
 0.8
44 LOC101259996 heavy metal-associated isoprenylated plant protein 6 101259996 4.2 4.8
 0.8
0.1
 5.7
1.4
 1.3
0.7
 0.2
-0.1
 0.0
-0.5
 1.8
1.0
 0.5
0.2
 -0.1
-0.1
 0.5
0.5
 -0.1
-0.2
 0.5
0.3
 -0.4
-1.0
 0.2
-0.5
 0.5
-0.5
45 LOC101261845 uncharacterized LOC101261845 101261845 4.2 4.6
 0.1
 3.8

0.1
-0.2
 3.1
1.7
 -0.1
-0.5






46 tXET-B1 xyloglucan endo-transglycosylase 544101 4.2 4.3
 0.6
0.5
 3.8
3.6
 0.8
-0.0
 0.3
0.2
 1.0
0.5
 1.4
1.2
 0.5
0.5
 1.2
0.9
 0.3
0.3
 0.7
0.5
 1.1
0.1
 1.8
0.8
 0.2
-0.1
 0.4
0.1
47 LOC101262352 probable magnesium transporter NIPA8 101262352 4.1 4.5
 -0.6
 2.1
 0.9
 0.2
 -2.5
-2.9
 0.0
-0.8
 -0.7
-1.0
 0.0
 -0.1
 0.8
 -0.5
 0.4
 0.3
 -0.2
48 LOC101248276 uncharacterized LOC101248276 101248276 4.1 4.6













49 LOC101249692 probable calcium-binding protein CML36 101249692 4.1 4.3
 1.4
1.1
 4.7
4.5
 -0.0
-1.0
 0.4
-0.8
 -0.7
-0.9
 3.1
2.2
 -1.4
-1.5
 1.7
0.7
 1.0
0.9
 2.3
 -0.7
 3.6
 -0.3
-0.4
 -0.5
-0.6
50 LOC101250420 uncharacterized LOC101250420 101250420 4.1 4.5
 -0.4
-1.0
 3.0
-0.1
 -2.4
 -1.4
 -0.4
-0.7
 1.4
1.1
 -0.4
-0.4
 0.7
 0.4
 1.3
0.2
 -0.3
-0.5
 3.3
1.1

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