Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.4   101250742   rapid alkalinization factor 
 sly-r.5   101250742   rapid alkalinization factor 
 sly-u.4   101251815   rapid alkalinization factor 
 sly-u.4   101263243   rapid alkalinization factor 
 ath-u.4   RALFL22   ralf-like 22 
 ath-u.4   RALF23   rapid alkalinization factor 23 
 ath-u.4   RALF1   rapid alkalinization factor 1 
 gma-u.4   100500513   uncharacterized LOC100500513 
 gma-u.4   100775931   protein RALF-like 33 
 ppo-u.4   18111031   protein RALF-like 33 
 ppo-u.4   7481736   rapid alkalinization factor 
 ppo-u.4   7491312   protein RALF-like 1 
 mtr-u.4   11433312   protein RALF-like 33 
 mtr-u.4   11413171   protein RALF-like 33 
 osa-u.4   107278442   protein RALF-like 33 
 osa-u.4   4352443   rapid alkalinization factor 

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Top 50 coexpressed genes to 101250742 (sly-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sly53   Ascorbate and aldarate metabolism  2 62 2.01
 sly1250   Biosynthesis of nucleotide sugars  2 103 -
 sly10   Glycolysis / Gluconeogenesis  1 134 -
 sly520   Amino sugar and nucleotide sugar metabolism  2 136 -
 sly1240   Biosynthesis of cofactors  2 252 -

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sly:LOC101250742 (rapid alkalinization factor) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.4
for
101250742
sly-r.5
for
101250742
sly-u.4
for
101251815
sly-u.4
for
101263243
ath-u.4
for
RALFL22
ath-u.4
for
RALF23
ath-u.4
for
RALF1
gma-u.4
for
100500513
gma-u.4
for
100775931
ppo-u.4
for
18111031
ppo-u.4
for
7481736
ppo-u.4
for
7491312
mtr-u.4
for
11433312
mtr-u.4
for
11413171
osa-u.4
for
107278442
osa-u.4
for
4352443
1 AGP-1 Arabinogalactan 1 544160 6.7 7.3













2 LOC101249225 transcription factor MYB44 101249225 6.1 6.6
 0.1
-0.0
 1.1
0.9
 3.8
3.2
 2.4
1.7
 0.2
-0.2
 1.3
0.8
 3.3
3.1
 0.6
0.4
 1.2
1.0
 1.5
0.6
 2.5
2.4
 4.3
3.1
 1.0
-0.1
 2.5
0.2
3 LOC101264649 GPI-anchored protein LLG1 101264649 5.9 6.6
 -0.9
 3.2
 6.3
 2.2
 -0.1
 -0.2
-0.5
 3.6
3.5
 0.6
-0.2
 3.1
1.5
 1.0
0.7
 7.4
 7.6
 -0.9
 6.9
4 LOC101258701 uncharacterized LOC101258701 101258701 5.9 6.5
 -0.0
-0.1
 3.8
3.7
 4.4
4.0
 4.5
3.8
 -0.4
-0.8
 0.5
0.3
 3.9
2.0
 -0.2
-0.9
 2.4
2.3
 1.4
1.3
 3.1
2.9
 6.1
5.1
 0.2
-0.5
 3.3
2.7
5 LOC101246031 classical arabinogalactan protein 5 101246031 5.9 6.3













6 LOC101261989 profilin-1 101261989 5.5 5.9
 1.4
1.2
 3.0
1.4
 5.2
3.4
 2.7
1.6
 2.5
0.8
 0.7
0.2
 1.8
1.4
 2.0
1.3
 3.1
2.6
 0.7
0.6
 3.9
0.2
 3.2
1.8
 -0.3
 1.0
7 LOC101246605 classical arabinogalactan protein 9-like 101246605 5.5 5.9













8 LOC101260785 ras-related protein RABA4a-like 101260785 5.3 5.6
 0.5
0.1
 1.8
0.6
 3.7
2.1
 2.2
-0.2
 0.8
0.8
 0.9
0.2
 2.9
2.7
 0.1
-0.3
 3.8
2.2
 -0.0
-0.6
 3.0
1.5
 2.4
1.0
 0.0
 2.0
9 LOC101244634 lamin-like protein 101244634 5.3 5.7
 -0.1
-0.2
 4.0
1.4
 6.3
1.3
 2.4
0.5
 1.3
1.1
 0.6
0.4
 1.6
0.1
 0.7
-0.7
 3.2
0.0
 2.4
0.4
 0.4
 1.8

10 LOC101262289 leucine-rich repeat extensin-like protein 4 101262289 5.1 5.7
 2.2
1.4
 3.4
0.0
 4.4
2.8
 2.5
1.4
 2.7
-0.4
 2.7
1.6
 3.7
1.7
 1.8
0.5
 2.2
2.2
 1.2
0.7
 4.6
3.9
 5.6
0.6
 0.6
0.0
 2.9
2.6
11 LOC101246324 classical arabinogalactan protein 5 101246324 5.0 5.5













12 LOC101268754 HMG-Y-related protein A 101268754 5.0 5.5
 1.0
-1.7
 2.3
1.1
 0.3
 0.9
 -0.6
 0.7
0.6
 0.2
0.2
 0.2
-0.1
 0.9
0.3
 1.0
0.8
 2.3
1.4
 0.4
-1.1
 1.0
0.7
 0.2
0.2
13 LOC101250294 GATA transcription factor 8 101250294 5.0 5.5
 -0.3
-0.5
 3.1
0.8
 4.1
 1.0
 -1.0
 1.0
0.9
 4.7
2.9
 0.5
0.1
 3.2
2.0
 0.7
0.3
 2.5
 7.3

14 LOC101259895 chaperone protein dnaJ 6 101259895 4.9 5.3
 0.8
 4.2
 0.1
-0.5
 -0.3
-1.0
 -0.2
-0.4
 -0.0
-0.6
 0.0
-0.2
 -0.9
-0.9
 0.6
0.4
 0.3
-0.1
 0.5
 -0.7
 0.1
 -0.9
15 LOC101250915 harpin-induced1-like 101250915 4.8 5.2
 -0.1
-0.9
 0.4
-0.1
 4.7
 1.0
 0.8
 0.8
0.3
 1.7
0.7
 1.0
0.1
 1.7
1.6
 1.6
0.9
 4.6
3.7
 6.0
2.0
 0.5
0.3
 0.8
0.4
16 LOC778302 multicopper oxidase-like protein 778302 4.8 4.7
 1.1
1.0
 2.0
1.8
 2.7
1.8
 3.2
0.8
 1.3
0.3
 0.3
0.2
 2.7
2.7
 0.7
0.3
 4.5
3.1
 1.3
0.6
 3.8
3.6
 4.5
4.0
 0.4
-0.3
 3.4
1.0
17 LOC101251289 GATA transcription factor 8-like 101251289 4.7 5.1
 -0.3
-0.5
 3.1
0.8
 4.1
 1.0
 -1.0
 1.0
0.9
 4.7
2.9
 0.5
0.1
 3.2
2.0
 0.7
0.3
 2.5
 7.3

18 Cel3 endo-1,4-beta-glucanase 544032 4.7 5.0
 0.4
-0.3
 2.7
0.0
 1.9
0.8
 2.8
1.5
 0.5
-1.2
 1.2
0.6
 2.3
1.9
 1.1
-0.1
 2.1
1.6
 0.4
-1.0
 3.4
 4.6
 0.5
0.2
 2.2
0.3
19 LOC101250111 uncharacterized LOC101250111 101250111 4.6 5.2
 -0.1
-0.5
 3.1
2.5
 4.8
0.8
 3.4
-0.8
 0.6
0.2
 2.4
1.7
 3.7
3.2
 0.7
-0.4
 2.4
2.2
 1.1
0.7
 5.2
2.7
 6.7
4.4
 -0.5
 4.2
20 LOC101253711 laccase-17 101253711 4.6 4.9
 1.7
1.6
 1.4
0.7
 -0.4
 -1.0
 -0.5
 2.3
2.3
 1.0
0.9
 1.5
1.4
 1.8
1.5
 2.0
1.5
 0.6
0.5
 0.9
0.8
 0.6
-0.2
 -0.1
-0.2
21 LOC101263742 uncharacterized LOC101263742 101263742 4.5 5.0
 0.3
-0.3
 2.8
0.3
 2.5
0.4
 -0.0
-0.5
 1.4
-0.0
 2.1
1.0
 1.3
1.2
 0.3
-0.1
 1.3
0.8
 1.5
0.5
 3.2
3.2
 2.7
1.8
 0.7
0.1
 2.2
-0.1
22 LOC101267858 cellulose-synthase-like 101267858 4.5 5.1
 0.6
-0.3
 3.4
1.0
 3.0
2.6
 1.5
0.3
 0.5
-0.3
 0.2
-0.1
 4.1
3.3
 0.9
0.4
 3.3
3.2
 1.0
0.8
 2.0
1.5
 3.1
3.0
 3.0
0.4
 4.0
3.0
23 LOC101260983 thioredoxin H2 101260983 4.4 4.4
 0.8
0.4
 2.7
0.2
 -0.5
 -2.0
 -0.3
 1.1
0.9
 1.9
1.7
 0.4
 -0.0
 0.6
 4.9
0.5
 3.0
1.8
 0.4
0.1
 0.8
-0.3
24 LOC101256740 dihydroceramide fatty acyl 2-hydroxylase FAH1 101256740 4.4 4.2
 -0.3
 5.4
 3.7
1.9
 3.1
2.5
 -0.4
-1.5
 0.3
-0.1
 1.9
1.6
 0.5
-0.0
 3.4
2.9
 0.2
-0.1
 1.4
1.0
 0.8
0.1
 0.0
-0.7
 3.3
0.9
25 LOC101244974 protein ENHANCED DISEASE RESISTANCE 2 101244974 4.3 4.7
 1.0
0.1
 3.6
2.7
 4.7
0.5
 2.1
-0.3
 0.7
0.4
 0.1
-1.0
 2.4
2.3
 1.1
 -0.1
 1.1
 2.3
 5.3
 0.8
 0.5
26 FBA7 fructose-1,6-bisphosphate aldolase 101266063 4.3 4.6
 1.5
0.8
 3.5
2.4
 1.5
-0.6
 0.7
0.6
 0.9
0.2
 2.2
0.8
 0.4
0.3
 2.7
1.2
 2.1
0.3
 1.8
1.6
 2.2
-0.1
 1.1
0.0
 0.4
0.1
 0.9
0.8
27 LOC104645726 arabinogalactan protein 13 104645726 4.3 4.8
 1.2
 5.6
 5.3
1.5
 3.2
2.1
 3.0
2.9
 0.5
0.3
 1.8
1.8
 2.7
2.1
 3.3
3.3
 1.7
0.7
 0.6
 4.2

28 LOC101262652 xyloglucan 6-xylosyltransferase 2 101262652 4.3 3.8
 0.1
 2.6
 4.6
-0.4
 2.4
-0.5
 -0.0
-0.2
 -0.1
-0.1
 4.7
4.1
 2.7
0.1
 3.7
3.5
 0.9
0.3
 4.1
2.4
 6.6
3.7
 0.3
 2.9
29 LOC101267076 protein trichome birefringence-like 19 101267076 4.3 4.6
 0.7
0.3
 3.4
1.8
 0.9
 -0.8
 0.9
 0.6
0.3
 2.1
0.8
 1.5
 1.6
 0.6
 0.5
-0.7
 0.8
0.3
 1.4
 3.2
30 LOC101255422 reticulon-like protein B12 101255422 4.3 4.6
 0.2
 1.4
 1.6
 0.8
 0.6
 1.1
0.2
 1.6
0.8
 1.1
 1.5
 0.8
 -0.9
 0.4
 -0.1
 0.8
31 LOC101246345 probable galacturonosyltransferase-like 9 101246345 4.2 5.1
 0.3
0.1
 3.1
1.7
 6.2
3.6
 5.9
3.5
 0.0
-0.3
 0.3
0.1
 3.8
3.6
 1.2
0.9
 2.8
2.1
 0.9
0.8
 2.3
1.9
 5.6
5.4
 0.7
0.3
 3.4
2.3
32 LOC101266327 pollen-specific protein C13 101266327 4.2 3.9
 1.4
0.8
 6.9
1.2
 1.3
0.2
 1.9
0.2
 0.9
0.6
 2.1
1.1
 4.2
3.9
 1.2
0.6
 4.3
2.0
 0.4
-0.2
 2.9
-1.4
 5.3
0.7
 0.1
0.1
 1.1
0.3
33 LOC101251569 nodulin-related protein 1 101251569 4.2 4.5
 1.3
0.2
 1.3
0.3
 0.3
-0.8
 1.3
0.4
 1.4
0.4
 0.4
0.3
 2.7
2.6
 -0.2
 -0.2
 -1.2
 1.9
0.2
 1.2
0.4
 -0.1
 -0.6
34 LOC101247528 uncharacterized LOC101247528 101247528 4.2 4.5













35 LOC101260972 uncharacterized LOC101260972 101260972 4.2 4.5
 -0.5
 1.4
 3.7
 2.4
 -0.5
 -0.5
-0.5
 2.8
1.5
 -0.2
-0.6
 1.5
0.7
 0.7
0.7
 3.5
 4.8
 -0.2
-0.7
 3.6
1.2
36 LOC101263740 fasciclin-like arabinogalactan protein 17 101263740 4.2 4.5
 0.9
0.5
 2.8
2.2
 5.6
3.5
 5.0
2.8
 0.3
0.1
 0.8
0.4
 3.4
3.1
 1.6
1.1
 2.3
2.1
 0.8
0.8
 2.4
1.3
 3.3
2.0
 0.2
-0.0
 2.8
1.2
37 LOC101255415 protein NDL1-like 101255415 4.1 4.3
 -0.2
-0.4
 3.2
0.4
 1.7
0.4
 1.7
-0.7
 0.1
-0.4
 0.4
0.1
 3.6
2.8
 -0.2
-0.3
 0.4
0.3
 0.3
-0.3
 1.1
0.4
 3.5
2.9
 0.3
-0.0
 1.4
-0.1
38 LOC101244246 peroxidase 63 101244246 4.1 4.2
 1.4
0.1
 7.3
0.6
 4.9
1.6
 2.2
0.9
 0.2
-0.8
 0.7
-0.1
 5.7
4.1
 -0.1
 4.3
 0.2
 0.8
 3.0
 0.4
 2.0
39 LOC101263199 probable xyloglucan 6-xylosyltransferase 5 101263199 4.1 4.3
 -0.3
 1.6
 3.9
0.4
 0.6
-0.2
 0.2
-0.1
 1.0
0.2
 3.1
2.6
 0.1
-1.1
 2.8
1.9
 0.1
-0.5
 2.1
0.7
 3.5
2.0
 1.5
1.0
 1.7
0.9
40 LOC101249989 proline-rich receptor-like protein kinase PERK1 101249989 4.1 4.6
 0.9
0.5
 3.3
2.7
 3.6
2.0
 1.2
1.2
 1.0
0.5
 0.2
0.1
 1.7
1.0
 0.4
-0.1
 1.6
1.4
 0.6
0.5
 4.8
2.7
 3.2
1.7
 0.5
0.5
 3.0
2.4
41 LOC101257677 UDP-glucuronate 4-epimerase 1 101257677 4.1 4.4
 0.2
-0.2
 3.4
3.2
 5.6
1.7
 4.8
1.5
 0.8
0.5
 1.3
1.1
 3.7
3.1
 0.8
0.3
 2.1
2.1
 1.4
0.8
 3.0
2.2
 3.9
3.7
 1.6
0.6
 2.6
1.6
42 LOC101250019 nucleotide-sugar transporter family protein 101250019 4.0 4.2
 0.9
 2.3
 1.2
0.7
 -0.1
-0.4
 1.1
-0.5
 0.9
-0.6
 3.4
3.3
 -1.1
-1.4
 2.1
1.0
 0.6
-0.8
 5.0
3.0
 3.5
2.6
 -0.1
 2.8
43 LOC101265917 classical arabinogalactan protein 5 101265917 4.0 4.4













44 LOC101259991 KH domain-containing protein At3g08620 101259991 4.0 4.1
 0.7
0.4
 2.6
1.8
 3.2
1.9
 3.5
1.2
 -0.3
-0.6
 0.9
0.1
 1.2
0.9
 0.6
0.6
 2.3
1.6
 0.2
0.1
 2.7
0.7
 3.5
2.2
 1.1
-0.2
 1.9
0.4
45 LOC101251336 uncharacterized LOC101251336 101251336 4.0 4.3













46 LOC101260191 uncharacterized LOC101260191 101260191 4.0 4.4
 -0.8
-0.9
 0.7
0.5
 3.6
3.4
 3.5
2.9
 0.8
0.5
 0.7
0.5
 2.0
1.7
 1.8
0.7
 2.8
0.2
 1.1
0.1
 2.0
1.7
 3.9
2.1
 0.9
 2.3
47 LOC101245471 vesicle-associated membrane protein 101245471 4.0 4.3
 1.4
1.1
 2.3
0.9
 0.9
0.6
 1.8
0.0
 1.1
0.2
 0.8
0.8
 0.8
0.8
 1.0
0.0
 1.7
1.4
 1.4
0.9
 1.7
1.5
 1.2
-0.6
 0.6
0.3
 0.7
0.5
48 LOC101266204 NDR1/HIN1-like protein 13 101266204 4.0 3.7
 1.1
0.6
 2.7
2.1
 6.7
0.4
 2.8
1.8
 0.4
-0.4
 1.9
1.2
 5.0
3.6
 1.2
1.1
 1.7
1.6
 2.1
0.5
 4.9
1.3
 5.5
5.2
 0.7
0.4
 3.4
1.5
49 LOC101246809 classical arabinogalactan protein 5 101246809 4.0 4.2













50 LOC101263958 UDP-glucose 6-dehydrogenase 2 101263958
0.7
0.7
 1.5
1.1
 2.9
0.9
 1.2
1.0
 1.8
0.6
 1.3
1.0
 3.2
3.1
 1.9
0.7
 4.7
3.3
 1.4
1.0
 2.7
1.3
 4.4
3.5
 0.2
-0.0
 1.8
1.7
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