Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.4   101252303   transcription factor PIF4 
 sly-r.5   101252303   transcription factor PIF4 
 sly-m.5   101252303   transcription factor PIF4 
 ath-u.4   PIF4   phytochrome interacting factor 4 
 ath-u.4   PIL6   phytochrome interacting factor 3-like 6 
 gma-u.4   PIF4A   transcription factor PIF4 
 gma-u.4   100800166   transcription factor PIF4 
 gma-u.4   100784531   transcription factor PIF4 
 ppo-u.4   7480707   transcription factor PIF4 
 ppo-u.4   7464824   transcription factor PIF4 
 mtr-u.4   25490555   transcription factor PIF4 

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Top 50 coexpressed genes to 101252303 (sly-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sly196   Photosynthesis - antenna proteins  6 26 10.50
 sly73   Cutin, suberine and wax biosynthesis  1 34 -
 sly592   alpha-Linolenic acid metabolism  1 51 -
 sly520   Amino sugar and nucleotide sugar metabolism  1 136 -
 sly4626   Plant-pathogen interaction  2 221 -

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sly:LOC101252303 (transcription factor PIF4) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.4
for
101252303
sly-r.5
for
101252303
sly-m.5
for
101252303
ath-u.4
for
PIF4
ath-u.4
for
PIL6
gma-u.4
for
PIF4A
gma-u.4
for
100800166
gma-u.4
for
100784531
ppo-u.4
for
7480707
ppo-u.4
for
7464824
mtr-u.4
for
25490555
1 LOC101262001 cyclic dof factor 1 101262001 5.4 5.8
3.4
3.0
 4.8
3.2
 1.3
1.1
 1.4
1.2
 3.9
3.7
 2.3
1.6
 2.4
1.8
 1.1
0.8
2 TDR6 TDR6 transcription factor 544255 4.2 3.9
 1.9
 -0.9
 -0.5
 0.6
-0.1
 0.4
-1.1
 2.2
1.2
 -0.3
 -0.5
 1.0
0.1
3 G protein STAY-GREEN 101260158 4.2 4.6
 1.2
 3.2
-0.8
 4.7
1.2
 1.6
1.1
 1.3
1.0
 0.4
0.4
 1.3
 0.8
 1.0
4 LNK1 protein LNK1 101244909 4.1 3.5
 2.2
 4.9
 5.0
 1.5
1.3
 1.9
1.4
 2.8
2.8
 0.5
 -0.2
 2.2
1.5
5 LOC101245874 probable peroxygenase 5 101245874 4.0 2.5
 3.0
 -0.1
-1.0
 -0.6
-1.1
 0.1
0.0
 0.1
-0.0
 2.0
0.1
 1.0
-0.7
 0.3
-0.7
 0.3
-0.3
6 LOC543654 dehydration-induced protein ERD15 543654 4.0 2.9
 2.6
 0.6
 0.9
 -0.1
-0.2
 0.4
-0.3
 1.2
0.2
 0.9
-0.1
 1.0
-0.2
 -0.0
-0.4
7 LOC101263969 chlorophyll a-b binding protein 101263969 3.9 3.4
 2.0
 6.4
5.8
 6.9
6.5
 0.8
0.8
 1.4
1.3
 1.4
1.2
 1.4
1.3
 3.2
3.1
 2.9
2.8
8 CYP92B7 cytochrome P450 92B7 101251878 3.9 3.6
 1.8







9 Cry1b cryptochrome 1b 543688 3.9 2.4
 3.0
 1.3
 3.1
 2.0
1.6
 2.5
1.7
 2.5
2.4
 4.0
3.9
 2.1
1.8
 1.3
10 LOC101250636 probable transcription factor PosF21 101250636 3.8 2.7
 2.6
 0.5
-0.6
 1.6
0.7
 1.3
0.2
 0.4
0.4
 0.6
0.4
 -0.1
-0.3
 0.7
-0.4
 -0.2
11 ZEP zeaxanthin epoxidase, chloroplastic 544162 3.8 2.7
 2.6
 1.9
 3.4
 2.1
1.7
 2.9
1.5
 1.4
1.0
 -0.6
-0.6
 0.3
-0.6
 1.5
-0.1
12 CAB13 chlorophyll a-b binding protein 13, chloroplastic 101243766 3.8 4.0
5.8
 6.1
 1.0
0.6
 1.4
0.8
 1.0
0.7
 0.5
 1.3
 2.2
13 Dof22 Dof zinc finger protein 22 101255410 3.8 3.7
 1.6
 3.4
3.0
 4.8
3.2
 1.3
1.1
 1.4
1.2
 3.9
3.7
 2.3
1.6
 2.4
1.8
 1.1
0.8
14 LOC101243935 Myb family transcription factor 101243935 3.8 2.5
 2.7
 2.0
0.7
 0.9
-0.8
 1.8
1.1
 0.7
0.6
 1.4
1.0
 1.4
1.2
 1.6
1.4
 0.2
-0.7
15 LOC101253328 probable alkaline/neutral invertase B 101253328 3.7 2.7
 2.5
 1.0
0.5
 1.8
0.6
 0.9
-1.0
 0.1
-1.3
 -0.5
-1.4
 -0.4
-1.1
 -0.4
-0.7
 -0.4
-0.5
16 LOC101248161 uncharacterized LOC101248161 101248161 3.7 3.3
 1.9
 0.3
 0.7
 0.3
-2.7
 0.2
-0.3
 0.5
-0.2
 1.4
1.3
 -0.0
-0.1
 0.4
-0.4
17 LOC101245851 UDP-D-apiose/UDP-D-xylose synthase 2 101245851 3.7 3.8
 1.4
 0.3
-0.5
 -0.4
-0.6
 0.4
-0.5
 -0.9
-1.2
 -0.2
-0.2
 -1.3
-1.4
 -0.5
-0.8
 -0.7
-1.0
18 PTI6 pathogenesis-related genes transcriptional activator PTI6 544043 3.7 1.6
 3.6
 1.3
0.5
 0.6
0.3
 1.8
1.0
 1.8
1.8
 1.1
0.8
 2.2
1.3
 1.1
0.9
 1.1
0.1
19 LOC101262863 glucan endo-1,3-beta-glucosidase 4 101262863 3.7 4.1








20 LOC101055534 Hop-interacting protein THI121 101055534 3.7 3.6
2.5
0.2
 3.7
0.8
 1.6
1.4
 2.6
1.7
 3.6
3.3
 1.7
1.4
 2.5
1.4
 1.3
1.1
21 LOC101254927 probable aspartyl protease At4g16563 101254927 3.7 3.2
 1.9
 0.5
 0.2
 1.7
0.1
 0.7
0.6
 1.1
0.9
 -0.5
-1.6
 0.4
-0.2
 0.3
22 LOC101268226 transcription factor UNE10 101268226 3.7 3.5
-1.4
 0.9
 4.3
3.6
 1.9
1.3
 3.8
1.9
 4.6
1.9
 4.3
3.0
 0.8
23 LOC101249585 probable leucine-rich repeat receptor-like protein kinase At5g49770 101249585 3.7 2.9
 2.2
 0.7
-0.5
 0.2
-0.3
 2.3
0.2
 1.0
1.0
 2.1
0.7
 0.2
-0.1
 -0.3
-0.7
 0.7
-0.0
24 Wfi1 whitefly-induced gp91-phox 543603 3.7 2.4
 2.7
 0.2
0.0
 0.5
-0.3
 -0.3
-0.3
 1.1
1.0
 0.6
0.3
 1.5
0.7
 0.5
0.3
 0.6
0.3
25 EXLA1 expansin-like protein precursor 100134886 3.7 3.7
0.5
-0.2
 1.0
0.3
 -0.2
-0.4
 -0.7
-1.6
 -0.5
-0.6
 0.8
-0.2
 0.0
-0.2
 -0.5
26 LOC101262741 transcription factor KUA1 101262741 3.7 2.8
 2.3
 2.1
 3.6
 0.7
-0.6
 -0.1
-1.3
 0.3
-0.8
 0.2
-0.4
 -0.3
-0.4
 -0.9
27 LOC101248255 RHOMBOID-like protein 9, chloroplastic 101248255 3.7 3.7
-0.9
 -1.4
 1.1
0.9
 2.1
1.8
 1.9
1.8
 1.3
 0.9
 0.9
28 LOC101252312 uncharacterized LOC101252312 101252312 3.6 3.3
 1.8
 0.7
-0.4
 0.5
-0.1
 0.7
-0.2
 -0.1
-0.3
 1.2
1.2
 1.1
0.2
 1.8
0.6
 0.1
-0.3
29 LOC101266410 protein LNK1-like 101266410 3.6 3.7
 1.3
 4.9
 5.0
 1.5
1.3
 1.9
1.4
 2.8
2.8
 0.5
 -0.2
 2.2
1.5
30 CKX1 cytokinin oxidase/dehydrogenase-like 101055598 3.6 3.4
1.0
 1.7
 1.1
0.8
 0.1
0.1
 1.6
1.2
 -0.0
 -0.2
 1.1
31 LOC101258865 uncharacterized LOC101258865 101258865 3.6 3.2
2.3
1.6
 3.0
1.2
 -0.1
-0.3
 1.4
-0.1
 1.0
0.1
 0.7
0.6
 1.1
0.7
 0.1
32 LOC100736525 heat shock protein binding protein 100736525 3.6 2.2
 2.8
 0.4
 1.1
 1.2
0.2
 0.3
-1.2
 -0.3
-1.6
 0.8
-0.9
 1.0
0.0
 -0.2
33 IAA4 auxin-responsive protein IAA4 101255303 3.6 3.6
0.8
0.7
 2.1
1.8
 1.6
1.1
 0.3
0.0
 0.8
0.7
 2.3
0.9
 2.9
1.6
 1.2
1.0
34 alpha-DOX2 alpha-dioxygenase 2 543806 3.6 2.7
 2.3
 1.0
 1.4





35 ht1 hexose transporter 1 543737 3.6 3.4
 1.6
 0.2
-0.2
 0.3
0.2
 1.0
0.9
 0.4
0.4
 0.5
0.3
 1.7
0.9
 1.4
0.4
 1.1
0.1
36 5PT1 inositol-1,4,5-triphosphate-5-phosphatase 100134896 3.6 3.2
-0.5
 0.9
 0.6
-0.4
 2.1
1.2
 1.8
1.6
 1.3
-0.1
 2.0
-0.4
 0.9
-0.2
37 LOC101245729 chlorophyll a/b-binding protein 101245729 3.5 3.7
6.4
5.8
 6.9
6.5
 0.8
0.8
 1.4
1.3
 1.4
1.2
 1.4
1.3
 3.2
3.1
 2.9
2.8
38 LOC101267774 chlorophyll a-b binding protein 1-like 101267774 3.5 3.6
 1.3
 6.4
5.8
 6.9
6.5
 0.8
0.8
 1.4
1.3
 1.4
1.2
 1.4
1.3
 3.2
3.1
 2.9
2.8
39 LOC101268123 chlorophyll a-b binding protein 13, chloroplastic-like 101268123 3.5 3.0
 1.8
 5.8
 6.1
 1.0
0.6
 1.4
0.8
 1.0
0.7
 0.5
 1.3
 2.2
40 sbt4c subtilisin-like serine protease family protein 108348021 3.5 3.6
0.8
 -0.5
 0.8
-0.2
 -0.1
-0.3
 1.1
-0.4
 2.1
0.4
 0.7
0.6
 0.9
0.4
41 LOC101249686 PI-PLC X-box domain-containing protein DDB_G0293730 101249686 3.5 3.2
3.8
0.3
 2.4
-0.8
 1.3
0.8
 0.5
0.2
 0.6
-0.2
 1.2
0.3
 1.7
0.0
 -0.1
-0.7
42 CAB-10A Chlorophyll a-b binding protein CP24 10A, chloroplastic 101256629 3.5 3.6
4.3
 4.3
 0.3
0.2
 1.5
1.3
 1.1
1.0
 1.6
0.7
 3.0
2.3
 2.1
43 LOC101251891 wound-induced protein 1 101251891 3.4 2.6
 2.1
 -0.0
 -0.5
 0.4
-0.8
 -1.5
-1.5
 -0.1
-0.4
 0.0
-0.8
 1.3
0.2
 -0.5
-0.9
44 LOC101268608 protein LNK2 101268608 3.4 3.4
2.7
 5.1
 1.9
1.5
 3.0
2.3
 3.8
3.5
 0.8
0.5
 0.4
0.1
 1.7
45 LOC101247867 zinc finger protein 4 101247867 3.4 2.2
 2.5

1.2
1.1
 1.0
0.2
 1.7
1.3
 3.0
2.1
 1.0
0.6
 2.3
46 LOL1 protein LOL1 101265355 3.4 3.6
 1.1
 1.7
 0.8
 0.7
0.7
 1.4
1.3
 1.1
0.7
 1.9
0.5
 0.6
-0.5
 1.1
47 CIP1 CONSTANS interacting protein 1 778334 3.4 3.3
 1.4
 4.0
-0.5
 4.4
2.3
 2.1
2.1
 1.5
0.5
 2.7
2.1
 1.2
1.0
 0.5
-0.0
 0.6
0.6
48 PHOT2 phototropin-2 100037494 3.4 3.1
2.3
 3.1
 1.2
0.5
 3.7
3.4
 3.8
3.4
 2.1
1.1
 1.5
1.1
 0.1
49 ARF19A auxin response factor 19a 100498663 3.4 3.3


1.1
0.3
 0.8
0.5
 0.7
0.7
 1.4
1.1
 0.1
-0.2
 0.2
50 LOC101246034 transcription factor bHLH130-like 101246034 3.4 2.0
 2.7







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