Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.4   101260265   mediator of RNA polymerase II transcription subunit 33A 
 sly-r.5   101260265   mediator of RNA polymerase II transcription subunit 33A 
 sly-u.4   101268578   mediator of RNA polymerase II transcription subunit 33A-like 
 sly-u.4   101249759   mediator of RNA polymerase II transcription subunit 33A-like 
 ath-u.4   REF4   reduced epidermal fluorescence 4 
 ath-u.4   RFR1   REF4-related 1 
 gma-u.4   100785972   mediator of RNA polymerase II transcription subunit 33B 
 gma-u.4   100782680   mediator of RNA polymerase II transcription subunit 33A 
 gma-u.4   100812937   mediator of RNA polymerase II transcription subunit 33A 
 ppo-u.4   7458250   mediator of RNA polymerase II transcription subunit 33B 
 ppo-u.4   7457991   mediator of RNA polymerase II transcription subunit 33B 
 ppo-u.4   7454243   mediator of RNA polymerase II transcription subunit 33A 
 mtr-u.4   25488025   mediator of RNA polymerase II transcription subunit 33B 
 mtr-u.4   11440359   mediator of RNA polymerase II transcription subunit 33A 
 osa-u.4   4342710   mediator of RNA polymerase II transcription subunit 33A 

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Top 50 coexpressed genes to 101260265 (sly-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sly4075   Plant hormone signal transduction  4 221 2.71
 sly280   Valine, leucine and isoleucine degradation  2 56 2.09
 sly790   Folate biosynthesis  1 27 -
 sly62   Fatty acid elongation  1 35 -
 sly71   Fatty acid degradation  1 60 -

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sly:LOC101260265 (mediator of RNA polymerase II transcription subunit 33A) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.4
for
101260265
sly-r.5
for
101260265
sly-u.4
for
101268578
sly-u.4
for
101249759
ath-u.4
for
REF4
ath-u.4
for
RFR1
gma-u.4
for
100785972
gma-u.4
for
100782680
gma-u.4
for
100812937
ppo-u.4
for
7458250
ppo-u.4
for
7457991
ppo-u.4
for
7454243
mtr-u.4
for
25488025
mtr-u.4
for
11440359
osa-u.4
for
4342710
1 TBP1 telomere binding protein 100147728 4.9 5.2
 2.1
0.8
 1.5
0.6
 0.9
0.7
 3.1
2.1
 1.0
0.4
 1.6
1.4
 1.4
1.2
 2.1
0.9
 2.3
2.0
 2.1
1.2
 1.5
0.9
 2.0
0.3
 1.9
2 LOC101249748 uncharacterized LOC101249748 101249748 4.5 4.5
 2.6
0.9
 0.2
-0.3
 1.0
 2.1


1.7
1.1
 1.5
1.2
 1.5
0.3


3 LOC101263990 zinc finger protein BRUTUS 101263990 4.4 4.8
 2.6
1.2
 1.0
0.5
 2.0
 1.6
 1.9
1.4
 0.8
-0.4
 2.2
1.3
 2.7
2.1
 2.4
1.0
 2.1
1.2
 2.3
2.0
 2.9
1.9
 1.5
1.4
4 LOC101249305 WD repeat-containing protein 101249305 4.3 4.5
 2.7
2.7
 0.2
0.1
 2.6
 1.4
 3.7
3.5
 0.6
0.5
 2.0
2.0
 2.3
2.3
 1.5
1.4
 1.3
1.2
 2.8
1.0
 2.5
0.6
 0.3
5 LOC101247871 potassium transporter 11-like 101247871 4.2 4.5
 2.0
0.6
 2.3
-0.1
 1.1
0.3
 0.3
0.0
 2.7
2.1
 1.0
0.4
 1.4
1.3
 3.3
0.8
 3.6
0.7
 1.1
0.8
 1.9
1.4
 2.1
1.6
 0.8
0.6
6 LOC101244691 3-ketoacyl-CoA synthase 11-like 101244691 4.1 4.3
 0.8
0.8
 2.7
0.2
 -0.3
-0.4
 2.3
1.7
 1.0
0.5
 0.1
-0.1
 1.1
0.9
 -0.4
-0.4
 1.4
0.2
 1.2
0.9
 0.8
0.5
 1.4
-0.0
 0.7
0.5
7 LOC101243915 uncharacterized LOC101243915 101243915 4.1 4.3
 4.4
3.0
 1.9
-0.2
 2.8
1.4
 2.6
1.8
 3.8
2.9
 0.9
0.7
 0.8
0.8
 2.7
2.2
 2.4
1.3
 2.0
1.7
 4.0
2.4
 2.5
1.7
 2.2
2.1
8 LOC778232 transcription factor pfi 778232 4.1 4.4
 1.3
1.2
 0.6
0.3
 1.4
0.3
 2.2
0.2
 1.8
0.9
 1.2
0.3
 2.0
1.3
 1.7
1.1
 0.6
0.3
 1.9
1.8
 3.1
1.6
 2.2
1.9
9 LOC101252746 uncharacterized LOC101252746 101252746 4.0 4.4
 4.5
3.1
 1.7
0.9
 4.1
3.4
 3.1
3.1
 2.5
2.1
 2.3
1.4
 2.9
2.5
 2.2
1.0
 1.1
-0.2
 1.4
0.9
 3.4
2.8
 3.0
2.3
 1.4
1.2
10 MIR6023 microRNA MIR6023 102464818 3.9 4.2












11 LOC101244843 thioredoxin-like 1-1, chloroplastic 101244843 3.9 4.1
 0.6
-0.1
 -1.2
-1.4
 0.5
 -0.1
 -0.2
-0.3
 2.4
2.2
 1.8
0.6
 0.0
-0.4
 1.2
-0.3
 -0.3
-0.7
 0.5
 -0.9
 -0.1
-0.9
12 LOC101246524 uncharacterized LOC101246524 101246524 3.8 4.0
 4.5
1.4
 1.7
0.0
 2.8
 2.3
 5.1
4.5
 1.6
1.5
 1.4
1.1
 1.7
1.4
 2.2
1.7
 1.4
1.0
 3.6
 2.4
13 LOC101248771 uncharacterized LOC101248771 101248771 3.8 4.0
 1.5
 -0.1
 5.3
 2.9
 2.6
2.0
 2.9
1.7
 3.1
1.9
 1.9
-0.5
 1.0
-0.1
 2.9
0.1
 2.1
1.1
 4.4
4.2
 2.9
14 LOC101261751 light-inducible protein CPRF2 101261751 3.8 4.0
 4.0
-0.7
 1.2
0.4
 0.5
-0.5
 1.8
-0.5
 2.6
1.4
 1.6
1.0
 0.6
0.4
 1.2
1.0
 2.3
1.5
 0.9
0.8
 -0.2
-0.5
 1.0
0.3
 -0.9
15 LOC101247719 histidine kinase 3 101247719 3.8 4.1
 2.1
 -0.7
 2.8
 1.8
 1.7
1.4
 0.9
0.8
 1.2
1.0
 1.8
0.8
 1.9
0.8
 2.0
2.0
 3.8
1.9
 1.4
0.4
 -0.1
16 LOC101251567 uncharacterized LOC101251567 101251567 3.8 4.1
 -0.5
 0.2
 0.1
-0.2
 1.5
0.5
 0.2
0.0
 0.0
0.0
 -0.3
-0.7
 0.4
-0.0
 1.6
-0.2
 -0.3
-0.4
 0.7
 0.9
 0.7
-0.0
17 LOC101261516 CTL-like protein DDB_G0274487 101261516 3.7 3.9
 1.3
 -0.6
 0.8
 -0.3
 0.3
0.2
 0.5
-0.0
 1.2
1.0
 1.6
0.9
 0.2
-0.1
 0.9
0.8
 3.9
0.3
 2.2
1.5
 1.3
18 LOC101253498 receptor protein-tyrosine kinase CEPR2-like 101253498 3.7 4.0
 0.5
0.1
 0.1
-0.2
 -0.3
 1.8
 -0.4
 -0.8
 -1.4
 -0.1
 0.2
 0.6
 0.7
 0.3
 3.5
0.8
19 LOC101262503 transcription factor MYB1R1 101262503 3.7 3.7
 1.2
0.7
 -0.4
-0.6
 0.5
-0.1
 0.6
-0.1
 1.1
0.3
 1.9
1.7
 2.4
2.1
 -0.1
-0.3
 2.1
1.6
 -0.9
-1.4
 -0.8
 -0.4
20 LOC101248542 putative E3 ubiquitin-protein ligase LIN 101248542 3.7 4.0
 -0.4
 -1.3

1.1
0.3
 -0.1
-0.4
 -0.9
-0.9
 -0.7
 -0.3
 0.5
 -0.5
 0.9
 1.8
21 GCH1 GTP cyclohydrolase 1 543831 3.7 3.8
 0.6
 -0.0
 0.8
 1.3
 0.8
0.0
 -0.1
-0.8
 1.5
-0.1
 -0.7
-0.8
 1.3
-1.1
 1.1
0.5
 -0.3
-0.4
 1.0
0.1
 0.7
22 LOC101267790 serine/threonine-protein kinase EDR1-like 101267790 3.7 3.9
 1.2
-0.0
 0.2
-1.3
 3.4
2.0
 2.0
0.5
 2.5
1.0
 1.4
0.5
 2.1
1.2
 2.8
2.8
 1.9
0.4
 0.3
-0.4
 2.0
1.9
 2.5
1.7
 1.2
23 TCP13 TCP transcription factor 13 100736549 3.7 3.8
 2.2
0.4
 1.2
0.4
 1.8
0.6
 1.6
0.9
 1.0
0.5
 -0.8
-1.9
 0.5
-1.6
 0.4
-0.3
 -0.0
-0.1
 0.6
0.3
 1.6
 2.2
24 LOC101262741 transcription factor KUA1 101262741 3.6 3.4
 -0.3
 -0.0
 0.3
 1.0
 3.5
1.5
 1.8
0.8
 -0.4
-0.8
 -0.1
-0.5
 1.7
1.0
 -0.5
-1.8
 2.7
 3.1
 0.4
25 LOC101257978 uncharacterized LOC101257978 101257978 3.6 4.1
 0.3
-0.1
 0.2
-0.8
 -0.2
-0.7
 2.1
-0.1
 0.5
-0.5
 0.2
-0.2
 0.5
-0.3
 0.3
-0.4
 -0.3
-0.5
 1.1
-0.1
 -0.4
-1.4
 0.9
-0.1
 0.6
0.3
26 LOC101250855 proline-rich antigen homolog 101250855 3.6 3.6












27 LOC101255681 TGACG-sequence-specific DNA-binding protein TGA-1A 101255681 3.6 3.8
 1.3
1.3
 -0.3
-0.6
 0.1
-0.4
 1.2
0.1
 1.1
0.8
 1.3
1.0
 2.2
2.1
 2.3
0.8
 1.0
0.4
 1.7
1.6
 0.4
0.4
 1.6
1.3
 1.0
28 LOC101257128 SCARECROW-LIKE protein 7 101257128 3.5 3.6
 0.9
 0.2
 1.8
1.5
 3.0
-0.1
 2.8
2.3
 1.5
1.1
 0.7
0.7
 1.1
0.2
 0.8
-0.1
 1.6
0.6
 0.5
 1.4
 -1.1
29 LOC101259351 autophagy-related protein 18f 101259351 3.5 3.7
 3.7
-0.7
 0.7
0.2
 1.3
 -0.7
 2.3
2.0
 2.1
1.5
 1.8
1.6
 2.5
2.3
 1.4
1.1
 0.6
0.1
 2.5
 1.3
 1.7
30 LOC101247366 E3 ubiquitin ligase BIG BROTHER-related 101247366 3.5 3.7
 2.5
1.0
 0.1
-2.1

1.9
-0.5
 2.8
0.4
 1.4
-0.3
 1.3
1.0
 0.4
0.3
 0.8
0.7
 2.6
 1.7
 0.8
31 LOC101248552 transcription factor MYBS3 101248552 3.5 3.7
 1.7
 -2.3
 -1.5
 1.7
 0.9
0.6
 1.7
0.8
 0.9
0.3
 1.2
0.9
 2.1
1.9
 -0.6
-0.6
 1.6
 -0.5
 -1.0
32 LOC101263256 F-box protein At2g16365 101263256 3.5 4.0
 1.0
-0.0
 0.2
-1.2
 -0.1
-0.6
 0.7
-0.5
 0.4
-0.3
 1.5
-0.6
 1.4
0.7
 0.9
0.8
 1.2
1.2
 2.5
1.8
 2.5
 0.7
33 LOC101263689 probable serine/threonine-protein kinase SIS8 101263689 3.5 3.5
 0.8
0.7
 2.0
0.8
 0.6
0.4
 1.1
-0.3
 1.7
1.2
 2.2
1.6
 3.3
3.1
 3.4
1.8
 2.7
0.6
 0.5
0.2
 1.6
1.1
 4.4
1.4
 2.3
0.6
34 LOC101262786 protease Do-like 7 101262786 3.5 3.9
 3.9
2.9
 2.1
1.5
 1.9
 1.1
 2.1
0.9
 1.7
0.4
 1.1
0.5
 2.8
 2.9
 0.3
 2.2
1.5
 1.9
1.4
 0.8
35 LOC101266575 CDPK-related kinase 1 101266575 3.4 3.6
 1.2
-0.4
 1.6
-0.0
 1.6
0.2
 1.6
1.2
 2.8
1.0
 3.1
2.2
 4.1
3.4
 1.3
1.2
 2.3
1.0
 1.5
1.1
 1.5
1.4
 2.6
2.1
 1.4
1.4
36 LOC101267430 protein EARLY FLOWERING 3 101267430 3.4 3.6
 2.7
2.2
 0.6
-0.1
 0.4
 0.0
 2.1
2.1
 0.5
0.0
 1.3
1.2
 2.0
1.6
 3.4
2.0
 -0.1
-0.6
 2.7
2.2
 1.6
0.8
 1.0
-1.1
37 LOC101260587 probable LRR receptor-like serine/threonine-protein kinase At1g06840 101260587 3.4 3.5
 3.3
0.8
 1.3
0.7
 1.6
0.3
 0.8
0.3
 1.2
1.1
 1.9
1.7
 1.5
1.1
 1.1
0.6
 2.7
1.6
 1.7
1.3
 2.0
1.7
 2.3
1.9
 -0.2
-0.3
38 LOC101255216 uncharacterized LOC101255216 101255216 3.4 3.6
 2.5
 0.8
 1.3
 0.2
 3.5
2.1
 1.3
1.1
 2.3
2.1
 2.5
 3.4
 0.7
 1.5
 2.7
 1.8
39 LOC101268382 F-box/LRR-repeat protein 2 101268382 3.4 3.6
 2.5
 -1.6
 1.0
 1.1
 1.7
1.3
 1.5
1.3
 2.2
2.1
 -0.7
 -0.9
 -0.4
 1.3
 3.0
 -0.0
40 LOC101257405 nitrate regulatory gene2 protein-like 101257405 3.4 3.5
 0.9
 -0.0
 1.8
0.2
 1.8
1.6
 2.8
2.0
 0.3
0.3
 1.1
0.6
 1.8
0.0
 0.8
-0.6
 -0.0
-0.2
 1.3
0.2
 2.0
-0.8
 1.0
41 LOC101252410 uncharacterized GPI-anchored protein At4g28100 101252410 3.4 3.8
 -0.1
 -0.9
 1.1
 -0.0
 0.9
0.3
 0.2
0.0
 0.3
0.1
 0.1
-1.3
 0.1
-0.5
 1.8
-0.7
 -0.2
-0.3
 1.0
-0.9
 0.5
42 LOC101265024 uncharacterized LOC101265024 101265024 3.4 3.5
 0.9
0.8
 1.0
0.1
 0.4
 1.2
 -0.4
-0.4
 1.8
1.1
 2.7
1.7
 0.4
-0.1
 1.9
-0.2
 4.0
2.7
 2.2
-0.4
 1.8
0.7
 0.6
43 LOC101261954 probable acyl-CoA dehydrogenase IBR3 101261954 3.4 3.5
 4.1
2.6
 0.3
0.3
 1.8
 1.5
 3.0
2.1
 1.2
1.0
 0.6
0.3
 4.1
1.1
 2.7
0.8
 0.7
0.7
 2.2
 1.8
 -1.3
44 LOC101252548 protein AUXIN SIGNALING F-BOX 2 101252548 3.4 3.3
 3.3
 -0.7

1.6
1.5
 1.9
1.7
 1.4
1.1
 -0.1
-0.4
 -0.6
-1.7
 3.2
-0.5
 1.6
0.6
 3.0
1.4
45 LOC101252846 isovaleryl-CoA dehydrogenase, mitochondrial 101252846 3.4 3.5
 0.3
-1.8
 -0.0
-0.2
 -0.2
 -1.1
 1.9
1.4
 0.5
0.1
 0.0
-0.3
 1.7
 0.8
 0.6
 0.8
 0.4
 -0.7
46 LecRK-VIII clade VIII lectin receptor kinase 101250174 3.3 3.5
 0.8
-0.1
 -0.6
-1.0
 0.6
0.3
 1.8
1.0
 1.0
1.0
 0.4
0.3
 0.8
0.6
 0.5
0.2
 -0.6
-1.3
 2.7
1.6
 0.6
 0.7
 -0.2
47 ABCC6 ABC transporter C family member 6 101253706 3.3 3.5
 0.8
-0.2
 1.7
0.2
 1.9
1.3
 1.7
1.6
 2.5
1.8
 1.6
1.5
 3.8
1.0
 2.4
2.3
 2.5
2.3
 1.8
1.0
 5.1
0.7
 2.3
2.0
 0.4
48 LOC101249604 chloride channel protein CLC-b 101249604 3.3 3.4
 0.5
-0.1
 0.3
-0.2
 0.0
-0.7
 1.8
0.9
 0.5
0.3
 1.0
0.5
 0.9
0.0
 0.7
 0.4
 0.7
 1.8
-0.4
 2.7
-0.2
 0.6
49 IAA27 auxin-responsive protein IAA27 543541 3.3 3.5
 -0.2
-0.3
 0.5
-0.5
 -1.1
 -0.2
 -0.4
-0.4
 0.4
0.0
 1.6
0.8
 0.8
0.6
 0.7
0.7
 0.3
-0.1
 1.5
0.1
 1.1
0.5
 3.1
2.0
50 LOC101248073 transcription factor LHW-like 101248073













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