Orthologous genes in OrthoFinder**

Species Gene Description
 osa-r.5   4334274   malate dehydrogenase, glyoxysomal-like 
 osa-u.4   4334274   malate dehydrogenase, glyoxysomal-like 
 osa-m.8   4334274   malate dehydrogenase, glyoxysomal-like 
 osa-u.4   4352871   malate dehydrogenase, glyoxysomal-like 
 ath-u.4   PMDH1   peroxisomal NAD-malate dehydrogenase 1 
 ath-u.4   PMDH2   peroxisomal NAD-malate dehydrogenase 2 
 gma-u.4   100799793   malate dehydrogenase, glyoxysomal-like 
 gma-u.4   732641   malate dehydrogenase, glyoxysomal 
 gma-u.4   100170735   peroxisomal malate dehydrogenase 
 sly-u.4   gMDH   glyoxisomal malate dehydrogenase 
 sly-u.4   101249428   malate dehydrogenase, glyoxysomal 
 ppo-u.4   7478683   malate dehydrogenase, glyoxysomal 
 ppo-u.4   7469671   malate dehydrogenase, glyoxysomal 
 ppo-u.4   7465546   malate dehydrogenase, glyoxysomal 
 mtr-u.4   11420535   malate dehydrogenase, glyoxysomal 
 mtr-u.4   11405683   malate dehydrogenase 2, peroxisomal 

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Top 50 coexpressed genes to 4334274 (osa-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1200   Carbon metabolism  8 256 11.32
 osa710   Carbon fixation in photosynthetic organisms  5 71 9.85
 osa630   Glyoxylate and dicarboxylate metabolism  5 71 8.08
 osa1230   Biosynthesis of amino acids  4 220 4.01
 osa260   Glycine, serine and threonine metabolism  3 64 5.00

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osa:LOC4334274 (malate dehydrogenase, glyoxysomal-like) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-r.5
for
4334274
osa-u.4
for
4334274
osa-m.8
for
4334274
osa-u.4
for
4352871
ath-u.4
for
PMDH1
ath-u.4
for
PMDH2
gma-u.4
for
100799793
gma-u.4
for
732641
gma-u.4
for
100170735
sly-u.4
for
gMDH
sly-u.4
for
101249428
ppo-u.4
for
7478683
ppo-u.4
for
7469671
ppo-u.4
for
7465546
mtr-u.4
for
11420535
mtr-u.4
for
11405683
1 LOC4334349 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like 4334349 Os03g0786000 10.4 7.5
 4.6
 1.4
0.3
 2.7
-0.3
 14.8
8.4
 5.2
3.5
 1.4
0.8
 4.8
4.4
 4.5
0.1
 2.2
-0.4
 2.2
1.3
 3.0
1.9
 0.9
0.7
 1.2
0.7
 3.1
1.0
2 LOC4342210 glutamate--glyoxylate aminotransferase 2 4342210 Os07g0108300 8.8 8.7
 8.7
 0.5
 0.8
0.2
 9.2
3.1
 6.6
5.3
 -0.9
-3.3
 3.5
2.5
 7.7
-0.5
 0.2
-0.0
 2.6
1.2
 6.5
4.7
 0.9
-1.0
 -0.5
 4.2
3 LOC4326617 ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial-like 4326617 OSNPB_010618800 7.1 5.8
 4.5
 0.7
 0.6
 2.4
 2.6
1.9
 2.2
1.7
 2.8
2.7
 3.5
 -0.5
 1.4
0.7
 1.3
0.9
 0.8
-0.6
 1.2
 1.7
4 LOC4346247 probable L-ascorbate peroxidase 4, peroxisomal 4346247 OSNPB_080549100 6.7 4.2
 1.8
 1.5
1.1
 2.0
0.2
 3.9
0.7
 2.4
2.2
 0.3
-0.2
 3.1
2.6
 5.4
0.0
 3.5
0.4
 3.3
2.5
 6.4
3.6
 3.5
2.5
 0.6
0.4
 2.7
-1.1
5 LOC4330469 monodehydroascorbate reductase 2, peroxisomal-like 4330469 OSNPB_020707100 6.5 6.1
 5.6
 1.4
0.5
 1.5
 1.6
 3.7
3.4
 2.4
0.9
 3.7
3.4
 3.9
 3.2
 1.8
 3.3
 0.5
 1.5
 2.4
6 LOC4350622 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 4350622 Os11g0526200 6.4 5.9
 5.3
 -0.3
 -0.5
 1.9
 3.2
2.2
 0.4
-0.1
 2.6
2.4
 2.2
 0.9
 0.7
 1.3
 -0.3
 -1.1
 3.6
7 LOC4325531 phosphoenolpyruvate carboxylase 1 4325531 Os01g0208700 6.2 5.0
 3.7
 3.7
1.0
 4.0
1.2
 1.3
0.9
 1.8
1.3
 0.9
0.5
 1.4
0.8
 2.6
1.1
 1.5
-0.4
 1.3
-0.9
 -0.1
-0.4
 0.8
0.2
 2.2
1.7
 1.8
0.6
8 LOC4342543 probable ribose-5-phosphate isomerase 3, chloroplastic 4342543 Os07g0176900 6.1 5.2
 4.2
 0.1
 -0.1
 1.6
 2.0
0.8
 -0.3
-0.5
 1.9
0.4
 1.9
 0.5
 3.2
1.3
 4.9
3.2
 0.9
0.1
 1.6
 0.7
9 LOC4324401 D-glycerate 3-kinase, chloroplastic 4324401 Os01g0682500 6.0 5.9
 5.7
 -0.3
 -0.7
 2.5
 2.9
1.9
 -0.7
-0.7
 2.4
-0.3
 3.5
 0.8
 0.7
0.2
 2.9
0.2
 1.3
-0.1
 0.6
 3.8
10 LOC4324354 zinc finger CCCH domain-containing protein 12-like 4324354 OSNPB_010917400 5.8 4.3
 2.8
 0.3
-0.2
 0.8
-0.8
 1.3
0.8
 2.2
1.6
 0.0
0.0
 1.7
1.4
 1.9
 -0.2
 0.2
-0.2
 0.7
0.0
 1.4
0.0
 1.8
 4.1
11 LOC4328520 homeobox protein knotted-1-like 2 4328520 OSNPB_020182800 5.7 3.9
 2.1
 0.4
0.3
 0.2
-0.3
 -0.1
-1.1
 0.9
0.8
 0.5
0.0
 0.9
0.7
 1.7
0.8
 -1.3
-2.1
 0.9
0.4
 2.0
1.4
 -0.1
-0.2
 1.6
0.9
 1.5
0.2
12 LOC4337906 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4337906 Os05g0164100 5.5 4.3
 3.1
 -0.1
-0.2
 0.8
 3.3
 4.3
2.3
 0.6
-0.2
 4.8
2.9
 2.2
 0.6
 1.7
0.8
 4.5
1.4
 1.3
-1.2
 0.5
-1.0
 1.3
0.9
13 LOC4338507 pentatricopeptide repeat-containing protein At2g30100, chloroplastic 4338507 Os05g0353300 5.5 3.8
-0.3
 0.9
 0.6
 2.2
2.1
 0.0
-0.4
 1.4
1.2
 1.3
 0.7
 0.2
 0.7
 -0.8
 -0.2
 1.3
14 LOC4338815 pheophytinase, chloroplastic 4338815 Os05g0419000 5.4 4.8
 4.1
 0.2
 -1.0
 5.7
 2.2
 0.7
 2.7
 2.2
 0.7
 1.8
 0.5
 0.6
 -0.5
 1.2
15 LOC4339689 translation initiation factor IF-2, chloroplastic 4339689 Os05g0575300 5.3 4.5
 3.7
 -0.6
 -0.8
 3.4
 3.8
3.3
 0.4
0.0
 4.0
3.0
 2.7
 -1.3
 1.6
1.5
 3.1
2.8
 0.3
0.2
 -0.8
 3.3
16 LOC4328085 protein LOW PSII ACCUMULATION 3, chloroplastic 4328085 Os02g0117100 5.3 4.3
 3.2
 -0.1
 1.0
 2.7
 4.1
 -1.0
 3.1
 3.1
 -0.8
 0.9
 1.7
 -0.6
 0.4
 2.1
17 LOC4325242 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 4325242 Os01g0960300 5.3 3.4
 1.5
 -0.5
 -1.1
 0.1
 2.8
1.3
 0.8
-0.3
 1.7
1.2
 -0.1
 -0.2
 0.8
 1.1
 -0.4
 -0.4
 3.3
18 LOC4329888 protein HHL1, chloroplastic 4329888 Os02g0600200 5.3 3.9
 2.6
 0.2
 -0.5
 3.7
 1.7
 1.2
 3.9
 2.4
 -0.0
 1.1
 1.1
 -0.2
 0.1
 4.3
19 LOC4352791 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like 4352791 OSNPB_120615400 5.3 4.6
 3.9












20 LOC9266147 alanine--tRNA ligase, chloroplastic/mitochondrial-like 9266147 OSNPB_060245800 5.2 4.9
 4.5
 -0.7
 0.2
 3.3
 5.5
2.7
 0.9
-0.9
 6.3
5.0
 3.7
 0.4
 1.6
 3.1
 -0.6
 0.5
 3.2
21 LOC112939414 uncharacterized LOC112939414 112939414 5.2 3.5













22 LOC4324366 uncharacterized LOC4324366 4324366 Os01g0919600 5.2 4.3
 3.3
 -0.7
 1.3
-0.3
 -0.4
-0.4
 1.2
0.4
 1.9
0.9
 1.4
1.2
 -0.3
-0.6
 0.7
-0.4
 1.3
-0.0
 0.5
-0.5
 -0.0
-0.8
 0.8
0.5
 -0.3
-0.9
23 LOC4346096 PGR5-like protein 1A, chloroplastic 4346096 Os08g0526300 5.2 4.7
 4.3
 0.3
-0.5
 1.2
-0.9
 7.6
0.5
 2.2
1.0
 -0.1
-0.7
 3.0
1.5
 4.5
2.5
 0.0
-1.6
 1.2
0.5
 2.3
2.1
 0.8
-0.5
 -0.6
-1.8
 2.9
1.1
24 LOC4344370 uncharacterized LOC4344370 4344370 Os07g0691200 5.1 4.1
 3.1
 -0.0
 0.6
 -0.2
 1.5
1.2
 2.4
-0.5
 1.7
0.7
 1.0
 -0.1
 -0.1
 1.3
 0.5
 1.0
 -0.2
25 LOC4333266 CBBY-like protein 4333266 Os03g0565200 5.1 4.3
 3.6
 -0.5
 -1.4
 8.1
 3.4
3.3
 0.0
0.0
 5.0
3.8
 3.9
 -0.8
 1.7
 2.8
 0.6
 -0.6
 1.9
26 LOC4338755 uncharacterized protein At4g15545 4338755 Os05g0406000 5.1 6.1
 7.1
 1.1
 1.3
 3.3
 3.4
1.8
 0.9
0.9
 3.8
2.7
 1.3
 0.7
 1.3
 2.1
 0.8
 1.0
-1.2
 1.7
1.4
27 LOC4341516 glycine dehydrogenase (decarboxylating), mitochondrial 4341516 Os06g0611900 5.0 4.9
 4.7
 -0.5
-1.5
 -0.5
-0.5
 6.9
3.9
 2.6
2.1
 0.9
0.7
 2.4
1.7
 5.7
 -0.4
 1.4
 4.6
 1.3
 -0.6
 1.4
28 LOC4349402 peptide methionine sulfoxide reductase A4, chloroplastic-like 4349402 OSNPB_100563600 5.0 3.8
 2.6
 1.1
0.1
 3.6
1.6
 1.0
0.5
 3.2
3.1
 0.8
0.6
 2.0
2.0
 2.4
1.0
 3.8
0.6
 3.2
2.4
 3.2
2.8
 1.9
0.4
 1.7
1.4
 3.9
-0.8
29 LOC4324967 probable membrane-associated 30 kDa protein, chloroplastic 4324967 OSNPB_010895100 5.0 4.7
 4.4
 0.3
 -0.8
 4.6
 4.6
3.9
 2.4
0.8
 5.8
4.2
 3.6
 2.8
 0.7
-0.2
 2.2
1.2
 -0.1
-0.9
 2.7
 3.4
30 LOC9271734 D-xylose-proton symporter-like 3, chloroplastic 9271734 Os03g0823200 5.0 2.9
 0.9
 1.2
 -0.8
 3.9
 2.2
1.7
 0.7
0.3
 2.0
1.5
 3.1
 -0.1
 0.9
 1.4
 -0.0
 0.7
 0.8
31 LOC4326583 carbonic anhydrase, chloroplastic 4326583 Os01g0639900 4.9 4.3
 3.7
 -0.9
 1.1
0.5
 9.1
9.0
 3.0
2.7
 0.9
0.5
 3.9
2.5
 3.0
1.4
 3.1
1.2
 1.8
1.8
 4.6
0.9
 2.5
0.3
 2.2
0.9
 1.5
1.2
32 LOC9266341 protein SUPPRESSOR OF QUENCHING 1, chloroplastic 9266341 Os03g0311300 4.9 4.7
 4.4
 -0.6
 -1.0
 5.6
 2.8
 -1.2
 2.2
 2.0
 -2.2
 1.8
 3.9
 0.5
 -0.4
 2.1
33 LOC4344164 ferredoxin-dependent glutamate synthase, chloroplastic-like 4344164 OSNPB_070658400 4.9 5.8
 6.8
 0.2
 3.7
-0.3
 9.5
-0.5
 4.1
3.9
 0.0
-0.8
 3.2
3.0
 2.3
 -1.0
 1.8
1.7
 3.4
1.8
 1.1
-0.8
 -0.8
 2.5
34 LOC4339204 phosphoglycerate kinase, chloroplastic 4339204 Os05g0496200 4.9 4.5
 4.2
 2.2
2.0
 4.9
2.0
 5.7
2.2
 4.2
3.4
 0.5
0.2
 4.6
2.7
 5.3
-0.6
 2.0
0.2
 1.1
0.7
 5.7
4.1
 3.4
3.3
 2.0
1.8
 6.3
0.9
35 LOC4329021 probable lactoylglutathione lyase, chloroplastic 4329021 Os02g0280500 4.9 3.7
 2.5
 2.5
1.1
 5.4
2.1
 1.9
0.0
 3.1
2.5
 2.1
1.4
 3.1
2.4
 3.4
2.8
 2.8
1.1
 1.5
0.7
 4.3
0.9
 1.4
0.9
 2.6
1.1
 4.7
0.6
36 SNAT1 serotonin N-acetyltransferase 1, chloroplastic-like 4339123 OSNPB_050481000 4.9 3.8
 2.7
 -1.2
 0.8
 2.2
 1.6
 0.5
 2.4
 2.0
 0.1
 0.8
0.1
 1.2
-0.0
 -1.6
-1.8
 -1.9
 3.2
37 LOC4349082 probable plastid-lipid-associated protein 10, chloroplastic 4349082 Os10g0509200 4.9 3.9
 3.0
 -1.3
 -0.7
 2.2
 4.2
 0.7
 3.8
 3.1
 0.8
 1.3
 1.2
 1.5
 -0.1
 2.4
38 LOC4350631 uncharacterized LOC4350631 4350631 Os11g0528500 4.8 4.0
 3.1
 -2.2
 -0.4
 1.5
 2.9
1.8
 -0.4
-1.0
 2.6
2.5
 2.8
 -1.4
 0.8
 -0.1
 0.6
 0.2
 4.7
39 LOC4325071 fructose-1,6-bisphosphatase, cytosolic 4325071 OSNPB_010866400 4.7 5.1
 5.4
 1.0
-0.1
 1.4
 3.9
 4.2
3.5
 1.5
0.2
 3.9
2.5
 4.7
1.3
 4.3
-1.3
 3.1
2.3
 3.8
3.4
 2.8
1.0
 1.0
0.0
 1.0
0.4
40 LOC4345120 uncharacterized LOC4345120 4345120 Os08g0266300 4.7 5.1
 5.5
 -0.3
 0.8
 5.1
 1.7
0.7
 -0.9
-1.8
 1.5
1.0
 6.0
 -0.7
 2.7
2.4
 1.6
1.4
 1.3
0.3
 -0.5
 2.3
41 LOC4350458 UV-B-induced protein At3g17800, chloroplastic 4350458 Os11g0456100 4.7 4.6
 4.5
 0.1
 0.5
0.1
 0.2
0.0
 2.0
1.0
 0.7
0.4
 3.7
2.7
 -0.3
 -0.7
 2.3
 -0.1
 0.3
 -0.0
 0.5
42 LOC4347462 ervatamin-B 4347462 Os09g0497500 4.7 1.6
 -1.5
 -0.5











43 LOC4337577 uncharacterized LOC4337577 4337577 Os05g0108000 4.7 4.1
 3.5
 -0.4
 1.2
 -0.1
 2.4
 2.2
 1.6
 1.0
 1.0
 1.0
 1.5
 -0.4
 1.6
 1.4
44 LOC4336102 indole-3-glycerol phosphate synthase, chloroplastic 4336102 Os04g0467700 4.7 4.1
 3.5
 -0.3
 3.1
-0.4
 0.4
0.1
 1.5
1.5
 1.2
0.7
 1.5
-0.4
 0.2
 1.0
 -0.2
 1.0
 3.6
 2.6
 0.7
45 LOC4344159 thioredoxin reductase NTRC-like 4344159 OSNPB_070657900 4.7 3.9
 3.0
 -0.1
 -0.6
 1.9
 3.4
2.5
 0.5
0.0
 3.0
2.9
 3.4
-1.9
 0.8
-1.1
 1.2
 3.7
 1.0
 1.6
 2.7
46 LOC4340112 uncharacterized LOC4340112 4340112 4.6 4.1
 3.5
 0.1
 -0.4
 4.6
 3.4
2.6
 0.3
-0.2
 4.0
3.7
 3.3
 -1.3
 1.9
 1.9
 1.0
 -1.0
 5.2
47 LOC4326466 thylakoid lumenal 17.9 kDa protein, chloroplastic 4326466 Os01g0102300 4.6 3.8
 3.0
 0.1
 -0.8
 3.4
 1.0
0.2
 -0.0
-0.6
 0.5
-0.4
 3.0
 1.3
 0.5
 1.8
 0.9
 -1.4
 2.7
48 LOC9271427 ACT domain-containing protein DS12, chloroplastic 9271427 OSNPB_080242700 4.5 4.3
 4.1
 -1.0
 -0.3
 3.7
 2.8
1.9
 1.1
0.5
 2.6
2.3
 3.1
2.4
 1.2
0.9
 3.2
3.0
 4.5
4.2
 0.8
0.6
 1.0
-0.1
 2.0
0.8
49 LOC4334719 uncharacterized LOC4334719 4334719 Os03g0838900 4.5 4.0
 3.4
 -0.8
 0.3
 0.8
 2.2
 1.1
 3.0
 3.1
 0.6
 1.8
 2.2
 0.8
 0.2
 1.8
50 LOC4339408 uncharacterized LOC4339408 4339408 Os05g0530300 4.5 3.8
 3.0
 0.5
-0.7
 0.2
-0.2
 1.3
-0.0
 0.5
-0.0
 1.1
0.9
 2.1
0.6
 0.3
 -1.0
 0.7
0.7
 1.0
0.9
 -0.3
-0.5
 0.8
 2.2
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