Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.4   11406042   pentatricopeptide repeat-containing protein At3g16610 
 mtr-r.4   11406042   pentatricopeptide repeat-containing protein At3g16610 
 gma-u.4   100780518   DEAD-box ATP-dependent RNA helicase 22 
 ppo-u.4   18111160   pentatricopeptide repeat-containing protein At3g16610 
 osa-u.4   4327814   pentatricopeptide repeat-containing protein At3g16610 

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Top 50 coexpressed genes to 11406042 (mtr-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 mtr3440   Homologous recombination  1 65 -
 mtr3020   RNA polymerase  1 71 -
 mtr3008   Ribosome biogenesis in eukaryotes  1 95 -
 mtr3015   mRNA surveillance pathway  1 124 -
 mtr3013   Nucleocytoplasmic transport  2 135 -

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mtr:LOC11406042 (pentatricopeptide repeat-containing protein At3g16610) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.4
for
11406042
mtr-r.4
for
11406042
gma-u.4
for
100780518
ppo-u.4
for
18111160
osa-u.4
for
4327814
1 LOC112416320 putative pentatricopeptide repeat-containing protein At2g01510 112416320 5.5 5.9

0.7
2 LOC11434046 midasin 11434046 MTR_8g018890 5.4 6.0
 7.0
6.5
 4.0
 1.6
3 LOC11434915 transformation/transcription domain-associated protein 11434915 MTR_5g022000 5.1 5.7
 2.6
2.4
 2.8
2.1
 -0.1
4 LOC25493359 pentatricopeptide repeat-containing protein At2g03880, mitochondrial 25493359 MTR_4g094502 5.0 5.3
 3.8
-0.5
5 LOC11429886 nuclear pore complex protein NUP205 11429886 MTR_7g099880 4.9 4.5
 5.0
 2.8
 0.0
6 LOC25488022 uncharacterized ATP-dependent helicase C29A10.10c 25488022 MTR_2g105760 4.8 5.1
 3.0
 2.9
 0.5
7 LOC11418300 putative pentatricopeptide repeat-containing protein At1g19290 11418300 MTR_2g049740 4.6 5.0
 3.2
 6.2
 0.3
8 LOC25501384 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 25501384 MTR_8g066250 4.6 5.1
 1.8
 4.4
9 LOC11414460 serine/threonine-protein kinase SMG1 11414460 MTR_4g068580 4.5 4.9
 3.2
 2.7
 -0.3
10 LOC11440721 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial 11440721 MTR_1g114190 4.5 4.8
 3.2
1.0
11 LOC25479571 pentatricopeptide repeat-containing protein At5g06540 25479571 MTR_0011s0300 4.5 4.9
 4.3

12 LOC11423830 pentatricopeptide repeat-containing protein At2g17140 11423830 MTR_4g091600 4.4 5.0
 3.5
1.7
13 LOC11443014 serine/threonine-protein kinase ATM 11443014 MTR_3g077860 4.4 5.5
 3.4
 2.6
 0.1
14 LOC11430732 auxin transport protein BIG 11430732 MTR_7g017100 4.4 4.8
 2.2
2.2
 2.3
 0.4
15 LOC25501872 pentatricopeptide repeat-containing protein At4g02750 25501872 MTR_8g089960 4.4 4.8
 3.4
2.0
16 LOC11425401 DExH-box ATP-dependent RNA helicase DExH14 11425401 MTR_3g025300 4.4 4.6
 2.7
 2.6
 -0.2
17 LOC11412652 pentatricopeptide repeat-containing protein At1g76280 11412652 MTR_6g069480 4.3 4.3
 2.9
 2.2
 0.6
18 LOC11424985 anaphase-promoting complex subunit 1 11424985 MTR_5g082890 4.3 4.6
 3.5
2.1
 2.8
 1.2
19 LOC11443043 small subunit processome component 20 homolog 11443043 MTR_3g083970 4.3 4.2
 6.3
 3.7
 0.7
20 LOC11442832 uncharacterized LOC11442832 11442832 MTR_4g075330 4.3 4.7
 5.0
 3.0
 1.8
21 LOC11427129 putative pentatricopeptide repeat-containing protein At5g37570 11427129 MTR_4g133610 4.3 4.5
 1.4

22 LOC25501253 uncharacterized LOC25501253 25501253 MTR_8g059275 4.3 4.6
 1.1
0.9
 3.2
2.3
23 LOC11414844 pentatricopeptide repeat-containing protein At5g52850, chloroplastic 11414844 MTR_1g099590 4.2 5.1
 2.5
0.9
24 LOC25497690 histone-lysine N-methyltransferase ATX2 25497690 MTR_7g021365 4.2 4.5
 2.7
2.6
 2.0
2.0
 -0.3
25 LOC11424440 pentatricopeptide repeat-containing protein At1g25360 11424440 MTR_1g073300 4.2 4.7
 5.0
1.2
26 LOC11421219 pre-mRNA-processing-splicing factor 8A 11421219 MTR_8g011150 4.2 4.5
 4.6
3.2
 2.0
 0.0
-0.6
27 LOC11410173 DNA-directed RNA polymerase III subunit 1-like 11410173 4.2 4.4
 4.6
 3.0
 1.3
28 LOC11429830 BEACH domain-containing protein B 11429830 MTR_3g100060 4.2 4.2
 2.7
2.2
 2.1
 0.8
-0.1
29 LOC25501870 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 25501870 MTR_8g089940 4.1 4.5
 0.9
0.6

30 LOC11434014 pentatricopeptide repeat-containing protein At2g32630 11434014 MTR_1g045880 4.1 4.4
 4.3
 3.0
31 LOC25489396 putative leucine-rich repeat-containing protein DDB_G0290503 25489396 MTR_3g073620 4.1 4.4
 1.4
0.9
 1.5
1.4
 0.1
32 LOC25495297 thyroid adenoma-associated protein homolog 25495297 MTR_6g011760 4.1 4.3
 4.3
 2.3
1.6
 0.8
33 LOC25483967 nuclear pore complex protein NUP160 25483967 MTR_1g063180 4.1 4.5
 5.6
5.3
 2.9
 1.4
34 LOC25486252 pentatricopeptide repeat-containing protein At4g16390, chloroplastic 25486252 MTR_2g026600 4.1 4.3
 4.9
4.1
 2.8
1.5
 1.3
35 LOC11442326 E3 ubiquitin-protein ligase UPL1 11442326 MTR_5g066710 4.1 4.2
 3.2
2.6
 1.3
 0.4
36 LOC11428210 pentatricopeptide repeat-containing protein At2g22410, mitochondrial 11428210 MTR_7g093900 4.1 4.3
 3.1
0.8
37 LOC11446858 pentatricopeptide repeat-containing protein At1g26900, mitochondrial 11446858 MTR_2g019350 4.0 4.2

1.2
38 LOC11424203 uncharacterized LOC11424203 11424203 MTR_2g007250 4.0 4.5
 2.5
 1.8
 0.4
39 LOC25489905 E3 ubiquitin-protein ligase UPL1 25489905 MTR_3g099777 4.0 4.2
 3.2
2.6
 1.3
 0.4
40 LOC11418353 chromatin structure-remodeling complex protein SYD 11418353 MTR_4g118720 3.9 4.3
 3.2
3.1
 2.5
1.9
 -0.5
41 LOC11429828 protein SABRE 11429828 MTR_3g099880 3.9 3.8
 3.3
3.2
 1.5
 0.7
42 LOC11427460 pentatricopeptide repeat-containing protein At4g37170 11427460 MTR_5g008600 3.9 4.3
 4.5

43 LOC11437873 pentatricopeptide repeat-containing protein At4g30700 11437873 MTR_4g130500 3.9 3.8
 3.2
 2.5
44 LOC25499723 protein ILITYHIA 25499723 MTR_7g116425 3.9 4.2
 4.0
4.0
 2.5
 0.2
45 LOC25488566 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 25488566 MTR_3g011950 3.9 4.2
 4.1
2.2
 1.9
 2.0
46 LOC11431983 protein DDB_G0276689 11431983 MTR_3g108360 3.9 4.1
 2.4
 2.4
 0.1
47 LOC112419204 probable disease resistance protein At4g27220 112419204 3.8 4.1
 1.1
0.9
 3.2
2.3
48 LOC25493427 E3 ubiquitin-protein ligase UPL1 25493427 MTR_4g094705 3.8 4.1
 2.5
2.4
 4.0
2.5
 -0.1
49 LOC120576904 uncharacterized LOC120576904 120576904 3.8 4.1


50 LOC25495914 uncharacterized LOC25495914 25495914 MTR_6g033340 3.8 4.0
 1.7
1.4
 1.2
1.1
 -0.8
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