Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-r.6   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.9   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.notissue   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.tis   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.str   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.hor   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.bio   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.lig   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-e.1   SWI3A   SWITCH/sucrose nonfermenting 3A 
 gma-u.4   100800135   SWI/SNF complex subunit SWI3A 
 gma-u.4   100790238   SWI/SNF complex subunit SWI3A 
 ppo-u.4   7456341   SWI/SNF complex subunit SWI3A 
 mtr-u.4   11435068   SWI/SNF complex subunit SWI3A 
 sly-u.4   SWI3A   SWI/SNF complex subunit SWI3A 
 osa-u.4   4336176   SWI/SNF complex subunit SWI3A 

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Top 50 coexpressed genes to SWI3A (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3040   Spliceosome  5 180 4.05
 ath3420   Nucleotide excision repair  3 55 3.44
 ath3410   Base excision repair  2 39 2.36
 ath3030   DNA replication  2 42 2.30
 ath3022   Basal transcription factors  2 44 2.26

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ath:SWI3A (SWITCH/sucrose nonfermenting 3A) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
SWI3A
ath-r.6
for
SWI3A
ath-m.9
for
SWI3A
ath-m.4.notissue
for
SWI3A
ath-m.4.tis
for
SWI3A
ath-m.4.str
for
SWI3A
ath-m.4.hor
for
SWI3A
ath-m.4.bio
for
SWI3A
ath-m.4.lig
for
SWI3A
ath-e.1
for
SWI3A
gma-u.4
for
100800135
gma-u.4
for
100790238
ppo-u.4
for
7456341
mtr-u.4
for
11435068
sly-u.4
for
SWI3A
osa-u.4
for
4336176
1 ATO splicing factor-like protein 830503 At5g06160 6.6 6.4
 5.1
 569.3
 3.4
 2.0
 0.7
 1.5
 0.3
 2.4
 2.1
1.9
 3.2
3.1
 3.3
2.8
 3.2
 1.9
 3.4
2 ATCHR12 SNF2/Brahma-type chromatin-remodeling protein CHR12 819772 At3g06010 6.3 5.9
 5.0
 535.4
 2.4
 2.6
 1.1
 2.4
 2.1
 2.3
 2.9
2.3
 3.4
3.2
 0.5
0.4
 5.2
3.3
 2.4
 4.6
3 AT1G18950 DDT domain superfamily 838476 At1g18950 6.0 7.0
 3.3
 2421.5
 4.0
 1.6
 0.3
 0.5
 0.3
 2.7
 2.3
1.7
 1.7
1.1
 1.4
0.8
 4.1
 2.0
 4.0
1.4
4 HEB2 condensin-2 complex subunit H2-like protein 820925 At3g16730 5.8 5.2
 4.8
 5730.6
 2.5
 0.8
 1.1
 -0.1
 0.3
 3.1
 4.0
3.8
 1.2
0.8
 -0.5
-1.0
 0.7
 1.9
 1.7
5 AT5G45190 Cyclin family protein 834555 At5g45190 5.5 5.4
 4.2
 4300.3
 1.2
 1.1
 0.3
 1.0
 2.1
 2.2
 2.9
2.8
 2.4
1.9
 2.6
0.9
 2.9
1.6
 1.6
 2.7
0.8
6 CYP59 cyclophilin 59 841810 At1g53720 5.5 5.0
 4.6
 1974.7
 2.5
 1.3
 0.4
 1.2
 0.6
 2.7
 2.0
1.4
 3.0
2.1
 1.8
 3.6
2.8
 1.9
 2.6
0.2
7 ADA2A ADA2 2A 819965 At3g07740 5.3 3.7
 5.5
 1570.1
 1.3
 1.7
 1.3
 1.9
 1.7
 1.7
 2.3
1.5
 2.4
2.2
 2.7
1.5
 4.0
3.0
 0.7
-0.0
 1.9
8 SMU2 RED family protein 817187 At2g26460 5.2 5.5
 3.5
 2195.2
 1.1
 0.2
 1.8
 0.9
 0.7
 1.8
 3.0
2.0
 3.2
2.8
 3.7
 3.0
 1.4
 1.4
9 AT5G20170 RNA polymerase II transcription mediator 832140 At5g20170 5.2 5.2
 3.8
 557.9
 3.8
 1.4
 1.2
 0.4
 1.5
 0.9
 2.2
1.7
 1.8
1.1
 3.5
 1.9
 2.4
 2.8
10 UPF3 Smg-4/UPF3 family protein 840295 At1g33980 5.2 5.5
 3.5
 2165.8
 1.5
 0.4
 2.5
 2.0
 1.2
 0.9
 3.0
2.7
 2.9
2.8
 2.8
2.0
 2.0
1.2
 2.0
1.6
 3.3
11 AT1G03910 cactus-binding carboxy-terminal, cactin 839371 At1g03910 5.1 5.9
 2.9
 2120.1
 1.4
 1.3
 0.4
 1.2
 0.7
 4.0
 1.9
1.8
 3.4
1.2
 3.5
 2.9
2.4
 0.3
 1.0
12 UNE6 LUC7 related protein 821276 At3g03340 5.1 5.4
 3.4
 1472.8
 1.5
 0.9
 -0.2
 1.7
 0.8
 1.7
 2.4
1.6
 2.1
1.5
 3.3
1.8
 3.6
 3.2
 2.0
1.5
13 AT5G38840 SMAD/FHA domain-containing protein 833875 At5g38840 5.1 4.4
 4.4
 1174.2
 1.5
 2.4
 0.6
 0.3
 2.2
 2.0
 1.2
-0.4
 2.7
2.0
 1.7
 1.9
 2.0
 0.7
14 AT1G79950 RAD3-like DNA-binding helicase protein 844335 At1g79950 5.0 5.0
 3.6
 290.2
 1.5
 3.1
 0.7
 1.5
 2.8
 1.4
 1.7
 3.1
0.5
 0.3
 0.5
15 CPL4 C-terminal domain phosphatase-like 4 5008312 At5g58003 4.9 4.0
 4.5
 597.2
 1.5
 1.6
 2.3
 0.6
 0.6
 1.4
 2.6
2.1
 3.9
3.5
1.9
 2.3
 1.7
16 AT1G77310 wound-responsive family protein 844067 At1g77310 4.8 4.3
 4.0
 1474.8
 1.4
 1.5
 0.8
 -0.2
 -0.5
 3.0
 3.5
3.4
 2.4
2.3
 1.0
0.3
 2.2
2.2
 2.7
 2.6
1.4
17 AT3G27520 cryptic loci regulator 822374 At3g27520 4.8 4.0
 4.3
 482.0
 3.2
 2.2
 1.2
 -0.3
 0.4
 1.9
 2.9
2.1
 1.4
0.2
 0.8
 -0.4
 0.2
 0.7
18 AT2G16940 Splicing factor, CC1-like protein 816197 At2g16940 4.7 5.0
 3.2
 1132.4
 2.0
 0.6
 1.6
 1.8
 3.7
 3.9
 3.5
3.5
 5.3
3.8
 1.7
1.1
 2.3
2.2
 1.1
 2.3
0.9
19 AT1G28060 Pre-mRNA-splicing factor 3 839699 At1g28060 4.7 4.9
 3.3
 900.7
 3.0
 1.5
 0.9
 1.1
 0.7
 1.8
 3.0
1.7
 2.9
2.6
 2.6
1.5
 4.3
1.9
 1.8
0.1
 2.2
20 DPB Transcription factor DP 831847 At5g03415 4.7 4.7
 3.4
 1749.7
 1.7
 0.6
 2.8
 1.2
 0.3
 0.2
 1.8
1.3
 4.3
2.6
 1.4
1.2
 2.4
1.2
 1.3
 0.6
-0.8
21 HAG2 histone acetyltransferase of the GNAT family 2 835775 At5g56740 4.7 4.5
 3.6
 538.1
 3.0
 1.1
 0.2
 1.6
 1.0
 3.3
 3.8
3.3
 3.0
2.3
 0.6
 0.1
 1.0
 1.0
22 AT3G48710 DEK domain-containing chromatin associated protein 824032 At3g48710 4.6 5.1
 2.9
 7431.6
 2.2
 0.3
 -0.7
 0.6
 1.3
 2.6
 2.5
2.4
 2.2
1.7
 0.6
-0.0
 2.6
 1.8
-1.4
 3.1
23 NBS1 nijmegen breakage syndrome 1 821254 At3g02680 4.6 3.2
 4.8
 766.5
 4.4
 0.5
 1.0
 2.5
 0.9
 1.6
 1.9
 2.3
 -0.1
 1.4
 0.7
 -1.2
24 AT4G16100 heat shock protein, putative (DUF789) 827296 At4g16100 4.6 4.5
 3.5
 2104.8
 0.7
 0.9
 3.3
 0.6
 -1.8
 1.9
 1.8
0.7
 2.9
2.4
 2.7
2.5
 1.8
1.3
 2.1
1.3
 3.7
2.4
25 BRIZ1 zinc finger (ubiquitin-hydrolase) domain-containing protein 818816 At2g42160 4.6 2.7
 5.2
 722.3
 -0.4
 1.9
 0.9
 1.2
 0.2
 0.8
 2.4
1.4
 1.1
0.9
 2.1
1.5
 2.3
1.8
 3.4
1.1
 1.0
-0.3
26 UVH6 RAD3-like DNA-binding helicase protein 839557 At1g03190 4.6 4.8
 3.2
 716.6
 1.8
 1.4
 1.4
 1.4
 0.7
 0.5
 1.8
0.3
 2.3
0.5
 2.6
 2.8
 1.8
 0.4
27 TTN7 Structural maintenance of chromosomes (SMC) family protein 817259 At2g27170 4.5 4.0
 3.8
 1690.7
 2.1
 1.0
 0.2
 1.2
 2.7
 1.8
 2.4
1.5
 2.7
2.5
 1.4
 2.4
 1.3
 0.8
0.6
28 RFC1 replication factor C1 832261 At5g22010 4.5 4.9






3.4
 1.9
0.9
 1.4
0.6
 0.7
 2.6
 2.1
 3.2
29 AT1G31870 pre-mRNA-splicing factor of RES complex protein 840077 At1g31870 4.5 4.1
 3.8
 1154.7
 2.0
 1.9
 1.2
 0.4
 0.1
 1.8
 0.6
 0.8
 3.0
 3.5
2.0
 2.0
 1.5
30 AT5G15570 Bromodomain transcription factor 831410 At5g15570 4.5 4.1
 3.8
 75.5
 3.6
 2.7
 1.7
 1.4
 1.6
 0.2
 3.1
2.7
 4.4
3.6
 2.5
2.5
 3.3
1.4
 2.1
 2.1
31 SWI2 switch 2 839417 At1g03750 4.5 3.3
 4.5
 939.9
 0.1
 2.0
 2.3
 1.6
 1.6
 0.8
 1.4
 2.2
 0.2
 1.7
 1.4
 2.5
32 AT1G01930 zinc finger protein-like protein 839310 At1g01930 4.5 3.9
 4.0
 3585.9
 0.7
 1.0
 0.7
 0.3
 0.9
 2.3
 -0.6
-1.1
 3.5
1.9
 2.0
 1.6
0.8
 1.6
 0.3
33 DRT111 D111/G-patch domain-containing protein 839927 At1g30480 4.5 3.4
 4.4
 458.3
 3.0
 1.9
 2.6
 0.8
 -0.8
 0.7
 1.4
1.0
 1.8
1.5
 1.7
1.6
 4.0
 3.6
 1.6
34 AT1G17520 Homeodomain-like/winged-helix DNA-binding family protein 838326 At1g17520 4.5 4.9
 2.9
 8802.0
 0.6
 1.1
 0.1
 0.5
 1.0
 1.7
 2.0
1.0
 3.9
2.3
 1.5
0.2
 2.6
1.1
 1.8
1.5
 3.6
35 AT5G46070 Guanylate-binding family protein 834648 At5g46070 4.5 4.9
 2.8
 3854.4
 2.0
 -0.1
 0.0
 1.7
 1.7
 2.9
 3.7
3.6
 3.9
3.1
 1.6
-0.3
 2.3
 1.9
1.1
 1.5
1.4
36 POLD3 DNA-directed DNA polymerase 844201 At1g78650 4.5 4.2
 3.5
 885.0
 2.2
 1.7
 1.1
 0.9
 1.4
 3.6
 2.7
2.0
 2.2
1.8
 0.3
 0.9
 0.4
 0.5
37 AT2G17410 ARID/BRIGHT DNA-binding domain-containing protein 816247 At2g17410 4.4 5.6
 2.1
 123.7
 3.7
 3.2
 1.3
 2.5
 0.8
 2.4





38 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein 835279 At5g52040 4.4 5.2
 2.4
 1968.8
 2.9
 2.4
 1.0
 0.9
 1.0
 2.6
 3.7
2.8
 3.0
2.7
 1.3
1.0
 2.5
1.7
 1.7
0.9
 3.3
2.6
39 AT3G52100 RING/FYVE/PHD-type zinc finger family protein 824373 At3g52100 4.4 4.9






2.6
 3.2
2.2
 4.2
4.1
 2.3
1.4
 2.0
 2.7
1.1
 3.2
40 AT1G80810 Tudor/PWWP/MBT superfamily protein 844420 At1g80810 4.4 3.9
 3.7
 3801.5
 1.6
 1.4
 -0.0
 0.5
 1.8
 1.7
 3.4
3.1
 4.1
3.3
 2.8
2.1
 4.8
4.1
 2.3
2.2
 2.8
0.5
41 AT4G37210 Tetratricopeptide repeat (TPR)-like superfamily protein 829875 At4g37210 4.4 4.1
 3.5
 757.9
 2.6
 0.9
 2.0
 2.4
 -0.3
 2.4
 2.6
2.4
 4.3
3.1
 1.7
1.4
 1.6
 1.9
 3.0
42 emb1579 ATP/GTP-binding protein family 814844 At2g03150 4.4 4.7
 2.8
 1950.8
 1.8
 1.3
 0.1
 0.9
 1.1
 1.4
 2.5
2.5
 3.1
3.0
 2.1
 2.6
 1.7
 0.7
43 YY1 zinc finger (C2H2 type) family protein 826093 At4g06634 4.3 5.2






1.8
 2.2
2.2
 3.5
1.9
 0.8
0.7
 1.6
 0.2
 1.6
-0.5
44 ARP apurinic endonuclease-redox protein 818744 At2g41460 4.3 4.1
 3.4
 2618.3
 1.9
 0.8
 1.0
 0.7
 2.3
 2.9
 -0.9
 0.7
 0.5
 1.7
 1.4
 0.1
45 AT4G31880 transcriptional regulator 829318 At4g31880 4.3 5.7
 1.7
 1862.2
 3.2
 1.2
 0.2
 0.9
 0.9
 3.3
 3.4
3.1
 4.1
3.3
 2.8
2.1
 4.8
4.1
 2.3
2.2
 2.8
0.5
46 GTE4 global transcription factor group E4 837133 At1g06230 4.2 4.9
 2.4
 4418.0
 1.2
 1.0
 1.0
 0.9
 1.5
 2.4
 2.8
2.6
 2.8
2.0
 2.0
2.0
 3.6
2.6
 2.2
1.5
 5.8
1.7
47 AT1G11060 WAPL (Wings apart-like protein regulation of heterochromatin) protein 837647 At1g11060 4.2 4.4
 2.9
 1239.7
 0.9
 0.8
 1.5
 2.0
 0.1
 0.8
 2.8
2.3
 2.7
2.6
 3.0
0.9
 1.6
 1.6
 2.4
48 TTN8 Structural maintenance of chromosomes (SMC) family protein 824632 At3g54670 4.2 4.8
 2.5
 5949.3
 2.6
 0.2
 -0.0
 0.9
 1.4
 2.4
 3.7
2.0
 3.1
2.2
 0.6
 3.8
2.1
 1.5
 0.7
49 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor 829822 At4g36690 4.2 4.5
 2.8
 4933.7
 1.4
 1.4
 0.4
 0.8
 1.6
 2.2
 3.2
2.0
 3.5
2.8
 1.6
1.4
 3.9
3.2
 2.1
1.7
 2.1
0.9
50 LIF2 RNA-binding (RRM/RBD/RNP motifs) family protein 827998 At4g00830 4.2 4.6
 2.6
 2656.7
 3.2
 2.1
 -0.6
 0.9
 1.8
 1.2
 3.1
2.1
 4.4
4.0
 3.2
3.0
 4.1
3.1
 3.3
2.0
 2.1
0.4
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