Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   AT3G09540   Pectin lyase-like superfamily protein 
 ath-r.6   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.9   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.notissue   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.tis   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.str   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.hor   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.bio   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.lig   AT3G09540   Pectin lyase-like superfamily protein 
 ath-e.1   AT3G09540   Pectin lyase-like superfamily protein 
 ath-u.4   AT3G55140   Pectin lyase-like superfamily protein 
 gma-u.4   100802068   probable pectate lyase 4 
 gma-u.4   100814368   probable pectate lyase 4 
 ppo-u.4   7491952   probable pectate lyase 4 
 ppo-u.4   7469793   probable pectate lyase 4 
 ppo-u.4   7467584   probable pectate lyase 4 
 mtr-u.4   25485739   putative pectate lyase 21 
 mtr-u.4   25484083   probable pectate lyase 4 
 sly-u.4   101244802   polysaccharide lyase family 6 protein 
 sly-u.4   101267397   probable pectate lyase 4 
 osa-u.4   4326883   putative pectate lyase 21 

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Top 50 coexpressed genes to AT3G09540 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath130   Ubiquinone and other terpenoid-quinone biosynthesis  1 39 -
 ath52   Galactose metabolism  1 57 -
 ath53   Ascorbate and aldarate metabolism  1 63 -
 ath500   Starch and sucrose metabolism  1 172 -
 ath1240   Biosynthesis of cofactors  2 236 -

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ath:AT3G09540 (Pectin lyase-like superfamily protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
AT3G09540
ath-r.6
for
AT3G09540
ath-m.9
for
AT3G09540
ath-m.4.notissue
for
AT3G09540
ath-m.4.tis
for
AT3G09540
ath-m.4.str
for
AT3G09540
ath-m.4.hor
for
AT3G09540
ath-m.4.bio
for
AT3G09540
ath-m.4.lig
for
AT3G09540
ath-e.1
for
AT3G09540
ath-u.4
for
AT3G55140
gma-u.4
for
100802068
gma-u.4
for
100814368
ppo-u.4
for
7491952
ppo-u.4
for
7469793
ppo-u.4
for
7467584
mtr-u.4
for
25485739
mtr-u.4
for
25484083
sly-u.4
for
101244802
sly-u.4
for
101267397
osa-u.4
for
4326883
1 NDL2 N-MYC downregulated-like 2 831051 At5g11790 8.9 8.3
 7.2
 9.9
 2.0
 3.3
 3.6
 3.5
 4.7
 3.6
 1.1
0.4
 0.5
-0.3
 4.6
2.7
 -0.5
-0.9
 1.5
0.2
 2.7
1.5
 1.1
0.6
 1.2
0.9
 0.8
0.1
 -0.4
-1.1
 0.7
0.4
2 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor 824402 At3g52370 6.1 5.4
 5.1
 97.5
 1.6
 0.7
 4.2
 3.5
 4.4
 2.7
 0.3
-0.0









3 AT3G09550 Ankyrin repeat family protein 820112 At3g09550 5.9 7.0
 3.2
 212.0
 -0.4
 1.6
 -0.8
 4.3
 -0.8
 12.2
 0.4
0.2
 -1.0
-1.1
 -0.2
-0.4
 0.5
-0.2
 1.2
0.8
 2.2
0.9
 0.2
-1.1
 2.1
0.2
 1.1
-0.9
 0.7
0.2
 0.3
4 GAE6 UDP-D-glucuronate 4-epimerase 6 821965 At3g23820 5.7 5.1
 4.7
 367.1
 2.0
 3.5
 2.8
 3.7
 2.1
 3.4
 0.3
 -0.6
-0.8
 0.9
0.3
 -0.3
-1.4
 -0.1
-0.2
 1.7
-0.6
 -0.2
 3.2
 1.7
 -0.9
5 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 818606 At2g40150 5.3 4.7
 4.4
 1465.4
 3.2
 0.4
 1.1
 2.1
 1.6
 2.5
 0.8
0.4
 0.4
-0.4
 -0.3
-0.3
 -0.2
-0.2
 -0.1
-0.9
 0.7
-0.1
 1.2
0.9
 0.0
-0.4
 1.3
1.1
 -1.3
-1.6
 2.7
2.2
6 AT5G01790 uncharacterized protein 831868 At5g01790 5.1 3.6
 5.2
 7.1
 -0.3
 3.7
 3.9
 4.2
 3.1
 3.8
 1.6
1.3
 0.3
-0.4
 0.3
-0.3
 -0.6
-0.8
 0.6
-0.3
 -0.7
-0.9
 0.6
-0.2
 0.3
-0.1
 -0.1
 -1.3
 0.7
0.5
7 AT4G25660 PPPDE putative thiol peptidase family protein 828671 At4g25660 5.1 4.8
 4.0
 2.8
 2.3
 3.4
 2.9
 3.1
 4.1
 3.4
 2.8
1.8
 0.7
-0.1
 0.9
0.5
 -0.3
-0.3
 1.5
0.2
 4.8
0.6
 2.4
-0.4
 -0.6
-0.8
 0.5
 -1.9
 1.1
8 AT5G41460 transferring glycosyl group transferase (DUF604) 834147 At5g41460 5.1 4.7
 4.1
 24.1
 -1.0
 4.0
 1.7
 3.2
 1.6
 2.3
 1.1
-0.2
 1.2
0.6
 1.5
1.5
 0.3
0.2
 1.0
-0.1
 1.7
-0.1
 0.8
-0.3
 0.7
-0.2
 1.0
0.5
 0.0
-0.1
 1.9
0.8
9 AT4G30650 Low temperature and salt responsive protein family 829188 At4g30650 5.0 4.5
 4.2
 53.0
 1.1
 4.4
 1.5
 2.9
 -2.1
 4.6
 0.1
0.0
 -1.0
 0.3
 -0.3
-0.5
 0.7
-0.0
 -0.1
-0.5
 -0.4
-0.4
 0.5
-0.1
 1.7
1.4
 0.4
-0.8
 1.3
-0.8
10 AT3G19340 aminopeptidase (DUF3754) 821468 At3g19340 5.0 4.6
 4.1
 6.3
 1.8
 3.7
 1.4
 4.9
 4.0
 4.7
 0.6
 0.2
0.1
 3.6
1.8
 2.0
-0.2
 1.9
0.3
 2.1
-0.4
 3.1
0.5
 0.1
-0.9
 2.2
 1.7
 -0.2
-0.4
11 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor 818159 At2g35860 4.9 4.2
 4.3
 342.3
 0.9
 0.8
 4.2
 3.1
 3.4
 2.7
 0.3
-0.0









12 AT3G06035 Glycoprotein membrane precursor GPI-anchored 819776 At3g06035 4.8 4.3
 4.1
 5.5
 0.6
 5.2
 3.7
 3.2
 1.4
 3.6
 1.5
1.4
 1.3
1.1
 1.2
-0.5
 -0.6
-0.6
 -1.0
-1.1
 0.4
-0.9
 0.7
0.1
 0.5
-0.0
 2.3
 0.5
 -0.0
13 GolS3 galactinol synthase 3 837457 At1g09350 4.8 4.4
 4.0
 73.2
 1.3
 2.5
 0.9
 3.3
 1.1
 2.8
 0.5
0.3
 -0.0
-0.5
 2.2
1.9
 1.1
0.9
 1.4
0.1
 1.5
0.8
 0.9
-0.4
 0.8
0.6
 0.6
-0.1
 0.1
0.1
 0.7
-0.3
14 RAP2.7 uncharacterized protein 817403 At2g28550 4.8 4.1
 4.2
 95.0
 3.0
 3.1
 2.9
 1.4
 0.3
 2.5
 1.4
0.6
 0.7
0.4
 1.8
1.3
 -0.0
-0.2
 1.8
0.7
 1.5
1.2
 0.9
0.6
 1.2
1.1
 2.2
1.3
 0.5
0.5
 1.0
0.7
15 IQD23 IQ-domain 23 836327 At5g62070 4.8 4.5
 3.8
 276.0
 0.6
 1.5
 2.1
 2.3
 2.0
 2.2
 -0.3
-0.6









16 AT2G38010 Neutral/alkaline non-lysosomal ceramidase 818379 At2g38010 4.8 4.4
 3.9
 3.9
 0.8
 4.3
 1.6
 3.5
 1.6
 3.5
 0.1
-0.7
 1.7
1.6
 2.1
0.7
 1.2
0.4
 1.4
1.2
 1.3
0.2
 1.1
0.8
 0.7
0.6
 0.7
 1.4
 -0.6
17 TRM21 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) 834410 At5g43880 4.7 4.2
 4.0
 284.5
 2.9
 1.7
 2.7
 2.4
 -0.6
 2.4
 1.2
0.6
 0.5
-0.1
 0.6
0.5
 -0.6
 -0.1
 1.7
 1.8
-0.2
 0.6
-0.8
 1.4
-0.4
 0.7
0.7
 0.8
-0.0
18 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 836213 At5g60920 4.7 3.9
 4.2
 79.4
 3.3
 3.3
 1.7
 2.2
 5.0
 4.0
 0.8
0.5
 0.6
0.5
 2.6
1.3
 -0.3
-0.5
 0.9
-0.6
 0.8
0.2
 1.2
1.1
 0.2
0.0
 0.5
0.5
 1.4
0.6
 0.9
0.1
19 AT1G10090 Early-responsive to dehydration stress protein (ERD4) 837544 At1g10090 4.7 3.7
 4.4
 12.2
 1.7
 4.0
 0.5
 4.5
 2.3
 3.0
 -0.0
-0.9
 0.8
-0.0
 1.6
0.8
 -0.2
 0.5
 0.4
 0.8
 2.9
 1.1
-1.0
 -0.4
-0.7
 0.5
-0.6
20 AT1G47900 filament-like protein (DUF869) 841207 At1g47900 4.7 4.8
 3.2
 476.9
 0.3
 1.3
 1.9
 2.0
 2.4
 2.6
 0.2
-0.2
 1.4
1.2
 2.1
1.3
 -0.5
-0.9
 0.0
-0.6
 0.9
0.5
 0.9
0.5
 2.6
0.2
 1.2
 -0.9
 -0.2
-0.7
21 AT4G15450 Senescence/dehydration-associated protein-like protein 827216 At4g15450 4.6 4.7






3.0
 1.2
-0.5
 -0.4
-0.9
 1.0
0.5
 -1.2
 1.7
 2.0
 0.4
0.4
 0.4
-0.6
 0.5
 -1.5
 0.5
22 AT5G66420 TIM-barrel signal transduction protein 836774 At5g66420 4.6 4.0
 3.9
 16.4
 2.1
 3.1
 0.5
 4.6
 1.1
 2.6
 1.9
 0.4
 0.3
 0.5
 -0.5
 -1.1
 1.1
 0.6
 -1.3
 -0.6
 -0.2
23 BAG1 BCL-2-associated athanogene 1 835281 At5g52060 4.5 4.3
 3.6
 166.1
 2.7
 0.8
 3.1
 4.1
 1.9
 3.6
 2.7
2.1
 0.4
0.3
 1.0
0.6
 0.7
-0.5
 1.6
-0.5
 1.0
-0.5
 1.5
0.5
 1.2
0.6
 1.2
1.1
 0.2
-0.8
 2.0
1.0
24 GH9B8 glycosyl hydrolase 9B8 817861 At2g32990 4.5 4.3
 3.5
 500.2
 0.9
 1.5
 1.8
 1.0
 3.9
 0.7
 1.0
 1.1
 0.3
 0.6
0.0
 1.4
1.2
 1.0
-0.7
 -0.2
-0.4
 1.0
0.5
 0.5
-0.7
 -0.7
-0.9
 3.3
1.3
25 GH9C2 glycosyl hydrolase 9C2 842747 At1g64390 4.5 4.3
 3.4
 695.4
 1.0
 2.2
 3.7
 1.7
 1.6
 2.1
 -0.2
-1.4
 -0.2
-0.9
 0.4
-0.1
 0.8
-1.1
 0.1
-0.2
 -0.9
-1.2
 0.6
 1.4
 1.8
-0.4
 -0.9
-1.2
 -0.5
-0.7
26 AT1G51090 Heavy metal transport/detoxification superfamily protein 841532 At1g51090 4.4 4.0
 3.7
 32.9
 0.2
 3.2
 -0.2
 4.4
 -1.1
 2.2
 0.8
-0.5
 1.5
0.7
 1.7
0.5
 0.5
0.3
 0.6
0.5
 1.1
-0.0
 0.1
-0.6
 0.6
0.6
 2.0
1.3
 0.7
-0.1
 1.7
1.1
27 tny Integrase-type DNA-binding superfamily protein 832650 At5g25810 4.4 3.6
 4.1
 461.9
 1.8
 1.5
 1.0
 1.5
 1.6
 0.8
 1.3
1.0
 0.8
0.4
 2.0
0.8
 1.4
0.2
 1.5
1.1
 1.0
1.0
 0.6
0.3
 2.2
1.8
 0.7
0.6
 0.1
-0.1
 1.9
1.2
28 AT3G02250 O-fucosyltransferase family protein 821223 At3g02250 4.4 3.2
 4.4
 1.0
 0.7
 3.5
 2.8
 4.1
 4.9
 2.3
 1.7
0.7
 1.0
1.0
 1.7
1.3
 0.7
-0.2
 1.3
-0.2
 2.3
0.7
 0.8
0.8
 0.6
0.2
 2.0
1.0
 -1.1
-1.2
 1.0
-0.1
29 AT3G55940 Phosphoinositide-specific phospholipase C family protein 824760 At3g55940 4.4 4.0
 3.6
 371.4
 0.6
 1.9
 0.9
 2.1
 -2.4
 2.8
 1.6
0.8
 0.8
0.5
 4.5
3.7
 -0.4
-0.4
 2.9
0.6
 2.2
1.2
 1.4
0.9
 3.4
1.6
 1.4
1.1
 2.9
-0.3
 0.5
0.0
30 LTI78 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) 835307 At5g52310 4.4 4.4
 3.2
 175.2
 0.3
 2.1
 0.1
 3.9
 2.7
 4.1
 0.0
-0.9
 -0.2
-0.6
 2.4
1.6
 0.9
 -0.5
 -0.6
 -0.2
-0.3
 3.0
1.5
 0.4
 0.5
31 TINY2 Integrase-type DNA-binding superfamily protein 831031 At5g11590 4.3 3.5
 4.0
 95.1
 1.5
 2.1
 1.4
 2.5
 1.1
 1.9
 1.3
1.0
 0.8
0.4
 2.0
0.8
 1.4
0.2
 1.5
1.1
 1.0
1.0
 0.6
0.3
 2.2
1.8
 0.7
0.6
 0.1
-0.1
 1.9
1.2
32 RBL6 RHOMBOID-like protein 6 837831 At1g12750 4.3 4.1
 3.3
 94.7
 0.7
 1.6
 0.7
 4.8
 1.2
 0.1
 2.6
0.9
 -0.5
-1.1
 3.3
0.6
 0.4
0.2
 0.9
-1.1
 -0.0
-0.1
 0.1
-1.2
 0.8
-0.2
 0.9
0.2
 -0.1
-0.7
 1.5
0.5
33 AT1G72500 inter alpha-trypsin inhibitor, heavy chain-like protein 843582 At1g72500 4.3 4.2
 3.3
 916.7
 1.6
 0.0
 2.6
 2.5
 1.7
 2.7
 0.5
0.1
 -0.3
-0.7
 3.0
1.9
 1.4
0.2
 0.4
-0.4
 1.1
0.4
 0.9
0.3
 0.7
-0.1
 0.2
0.1
 1.4
0.4
 1.2
0.5
34 AT1G13930 oleosin-B3-like protein 837953 At1g13930 4.3 3.3
 4.1
 66.0
 1.0
 3.1
 0.4
 2.1
 2.4
 2.5
 1.1
-0.2
 -1.4
-1.7
 2.2
2.0
 0.2
 -0.1
 4.0
 -0.1
-0.6
 1.9
0.2
 0.6
0.0
 -0.3
-1.2
 -1.1
35 ICS2 isochorismate synthase 2 838468 At1g18870 4.3 4.0
 3.3
 332.6
 1.1
 1.6
 0.4
 3.0
 2.2
 1.3
 0.5
-0.7
 -0.9
-1.4
 0.0
-0.4
 -0.5
 0.2
 -0.3
 -0.6
 0.2
 -1.2
 -0.5
 -1.3
36 XTH32 xyloglucan endotransglucosylase/hydrolase 32 818259 At2g36870 4.3 3.4
 3.9
 267.1
 1.6
 0.3
 2.7
 3.3
 3.0
 1.6
 0.6
-0.7
 -0.0
-0.0
 1.3
-0.1
 0.4
0.3
 1.5
0.8
 0.1
-0.5
 0.5
-0.5
 0.3
0.3
 1.5
-0.2
 0.3
-1.6
 0.5
0.2
37 AT3G07940 Calcium-dependent ARF-type GTPase activating protein family 819985 At3g07940 4.2 4.3
 3.0
 72.0
 -0.4
 1.6
 1.7
 2.6
 2.5
 2.4
 0.6

-2.1
 0.2
 -0.2
 0.8
 0.4
 1.1
 -0.4
 0.0
38 AT3G55760 uncharacterized protein 824742 At3g55760 4.2 3.8
 3.5
 15.2
 -0.9
 4.0
 0.7
 5.5
 0.4
 5.9
 1.0
 0.3
 1.1
 2.4
 -0.8
 2.0
 0.0
 1.7
 0.1
 0.6
 -0.6
39 AT4G13990 Exostosin family protein 827035 At4g13990 4.2 4.5
 2.8
 30.6
 -0.8
 3.8
 1.7
 3.5
 1.0
 3.7
 0.2
-0.2
 2.6
1.6
 3.3
2.0
 0.4
-0.3
 1.6
0.2
 3.5
1.4
 1.5
1.3
 1.8
0.7
 0.2
 0.2
 1.3
-0.5
40 NHL12 NDR1/HIN1-like 12 818169 At2g35960 4.2 3.7
 3.5
 241.9
 0.4
 1.8
 1.9
 1.9
 1.8
 2.5
 1.5
0.3
 1.1
0.5
 1.3
0.4
 -0.1
-0.5
 -0.1
-0.2
 1.0
0.2
 0.2
-0.2
 1.1
1.0
 1.8
1.4
 2.2
0.4
 3.0
1.9
41 AT2G32580 transmembrane protein, putative (DUF1068) 817818 At2g32580 4.1 4.3
 2.8
 950.3
 2.7
 1.0
 3.1
 1.9
 2.1
 2.3
 2.3
2.0
 0.9
0.9
 1.8
0.8
 -0.4
-0.5
 0.3
0.3
 4.0
1.1
 1.5
1.3
 0.7
0.0
 1.4
1.3
 -0.4
-0.6
 2.0
1.9
42 ERD4 Early-responsive to dehydration stress protein (ERD4) 839916 At1g30360 4.1 3.4
 3.7
 7.3
 2.5
 4.0
 1.2
 3.4
 2.8
 2.9
 -0.9
 -0.9
-1.8
 4.5
3.6
 0.1
 1.4
 2.2
 0.2
 4.9
 1.0
 0.1
 1.0
43 COR413-PM1 cold regulated 413 plasma membrane 1 816092 At2g15970 4.1 3.1
 4.0
 64.6
 1.6
 2.7
 1.0
 3.5
 2.9
 3.8
 0.9
0.1
 -1.7
-2.3
 3.8
2.1
 0.9
0.8
 1.0
0.9
 2.1
0.5
 0.0
-0.7
 0.3
-0.5
 0.5
0.1
 0.6
-0.0
 0.7
44 AT5G39410 Saccharopine dehydrogenase 833937 At5g39410 4.1 3.2
 3.8
 125.9
 0.3
 2.8
 2.1
 1.4
 -0.6
 2.9
 -0.8
 1.9
0.9
 1.5
1.1
 1.2
 -0.5
 3.2
 1.1
-0.8
 0.9
-0.6
 0.1
-1.5
 3.1
1.3
 0.9
45 AT5G55960 transmembrane protein C9orf5 protein 835694 At5g55960 4.0 3.8
 3.2
 27.5
 2.3
 3.4
 2.1
 3.4
 -0.9
 2.7
 -0.1
 2.4
1.6
 0.8
-0.0
 0.0
 -1.4
 -1.4
 1.0
 -0.6
 1.5
-0.1
 -0.3
-0.7
 0.8
46 AT5G46600 aluminum activated malate transporter family protein 834703 At5g46600 4.0 3.9






0.5
 0.9
-1.4
 0.1
-0.2
 1.3
0.1
 -1.1
 -0.8
 -0.9
 0.2
0.1
 0.3
-0.4
 -0.0
 -0.3
 -0.7
47 AT5G07030 Eukaryotic aspartyl protease family protein 830594 At5g07030 4.0 4.2
 2.7
 266.9
 0.1
 3.8
 0.6
 1.8
 -4.1
 1.3
 -0.6
-0.8
 -0.3
-1.5
 1.2
0.9
 0.2
-0.1
 0.5
0.3
 0.4
-0.5
 0.5
0.3
 0.9
0.4
 -1.0
 -0.8
 -0.2
48 AT3G50350 membrane insertase, putative (DUF1685) 824197 At3g50350 4.0 3.8
 3.1
 559.4
 1.4
 1.6
 0.8
 1.9
 2.7
 0.7
 -1.0
-1.2
 1.1
0.7
 1.6
1.1
 -1.7
-1.8
 2.0
0.6
 0.9
-0.3
 -3.0
 1.2
 0.6
 1.6
 0.1
49 XTH31 xyloglucan endo-transglycosylase-related 8 823634 At3g44990 4.0 3.2
 3.6
 3017.0
 2.6
 0.4
 1.7
 1.2
 4.4
 2.1
 0.6
-0.7
 -0.0
-0.0
 1.3
-0.1
 0.4
0.3
 1.5
0.8
 0.1
-0.5
 0.5
-0.5
 0.3
0.3
 1.5
-0.2
 0.3
-1.6
 0.5
0.2
50 GATL3 galacturonosyltransferase-like 3 837885 At1g13250 3.9 3.5
 3.3
 828.7
 0.3
 0.6
 1.5
 1.9
 2.1
 2.4
 0.9
-0.7
 0.3
0.1
 0.5
-0.5
 -0.6
-1.0
 0.5
-0.5
 -0.0
-1.2
 -0.0
 -1.2
 0.4
0.0
 1.8
0.2
 2.9
0.3
The preparation time of this page was 0.9 [sec].