Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-r.6   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.9   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.4.notissue   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.4.tis   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.4.str   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.4.hor   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.4.bio   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-m.4.lig   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-e.1   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-u.4   ALPHA-VPE   alpha-vacuolar processing enzyme 
 gma-u.4   100788554   vacuolar-processing enzyme 
 gma-u.4   100791675   vacuolar-processing enzyme 
 gma-u.4   100807010   vacuolar-processing enzyme 
 ppo-u.4   7463725   vacuolar-processing enzyme 
 ppo-u.4   7462273   vacuolar-processing enzyme 
 mtr-u.4   25482000   vacuolar-processing enzyme 
 mtr-u.4   11432331   vacuolar-processing enzyme gamma-isozyme 
 sly-u.4   VPE3   vacuolar processing enzyme VPE3 
 sly-u.4   VPE5   vacuolar processing enzyme VPE5 
 osa-u.4   4324683   vacuolar-processing enzyme 
 osa-u.4   4339804   vacuolar-processing enzyme 

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Top 50 coexpressed genes to GAMMA-VPE (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath220   Arginine biosynthesis  2 35 2.45
 ath250   Alanine, aspartate and glutamate metabolism  2 48 2.18
 ath630   Glyoxylate and dicarboxylate metabolism  2 78 -
 ath562   Inositol phosphate metabolism  2 79 -
 ath564   Glycerophospholipid metabolism  2 99 -

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ath:GAMMA-VPE (gamma vacuolar processing enzyme) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
GAMMA-VPE
ath-r.6
for
GAMMA-VPE
ath-m.9
for
GAMMA-VPE
ath-m.4.notissue
for
GAMMA-VPE
ath-m.4.tis
for
GAMMA-VPE
ath-m.4.str
for
GAMMA-VPE
ath-m.4.hor
for
GAMMA-VPE
ath-m.4.bio
for
GAMMA-VPE
ath-m.4.lig
for
GAMMA-VPE
ath-e.1
for
GAMMA-VPE
ath-u.4
for
ALPHA-VPE
gma-u.4
for
100788554
gma-u.4
for
100791675
gma-u.4
for
100807010
ppo-u.4
for
7463725
ppo-u.4
for
7462273
mtr-u.4
for
25482000
mtr-u.4
for
11432331
sly-u.4
for
VPE3
sly-u.4
for
VPE5
osa-u.4
for
4324683
osa-u.4
for
4339804
1 AT4G16190 Papain family cysteine protease 827311 At4g16190 8.3 7.1
 7.3
 16.2
 2.0
 5.5
 3.7
 3.6
 2.8
 4.7
 2.4
1.1
 1.0
0.7
 4.5
4.5
 5.0
4.0
 2.3
1.4
 5.7
5.6
 7.4
1.6
 4.7
3.5
 6.0
0.4
 9.0
-0.4
 5.0
4.9
 5.6
2.0
2 RD21A Granulin repeat cysteine protease family protein 841122 At1g47128 7.7 6.6
 6.8
 171.6
 1.9
 3.9
 5.7
 2.4
 2.0
 5.5
 1.8
1.7
 0.7
0.3
 5.2
2.7
 3.1
1.3
 2.2
1.4
 6.9
1.8
 3.0
-0.2
 4.1
3.9
 4.2
-0.1
 4.1
1.2
 7.6
 2.3
3 AT2G17710 Big1 816280 At2g17710 7.3 5.4
 7.1
 8.9
 3.5
 3.6
 4.8
 4.4
 1.9
 6.1
 2.7
 -0.1
-1.7
 5.2
2.7
 2.3
2.0
 -0.5
 0.4
 0.9
 1.6
 4.5
 0.9

4 AT4G13530 uncharacterized protein 826985 At4g13530 6.8 6.6
 5.1
 9.8
 3.4
 2.4
 4.4
 3.2
 2.3
 2.0
 0.9
-0.0
 -0.8
-1.3
 3.4
2.2
 3.2
2.9
 1.2
0.9
 2.2
0.1
 2.5
 2.0
 1.8
 2.7
 1.7
 0.6
5 AT3G06170 Serinc-domain containing serine and sphingolipid biosynthesis protein 819791 At3g06170 6.7 6.2
 5.4
 1.4
 2.9
 5.2
 4.5
 4.4
 2.7
 3.0
 1.3
 -0.7
 1.9
 2.8
 1.1
 2.6
 4.4
 6.1
 5.6
 3.8
 1.3
 0.4
6 AT3G51730 saposin B domain-containing protein 824336 At3g51730 6.5 6.0
 5.3
 18.0
 4.3
 2.3
 5.3
 2.9
 1.7
 4.5
 2.2
-0.1
 0.1
0.0
 2.2
1.5
 2.2
1.4
 1.4
0.5
 4.8
4.3
 -0.8
 1.5
 1.7
0.4
 2.6
1.0
 4.4
2.8
 1.3
1.0
7 PUM5 pumilio 5 821569 At3g20250 6.2 4.7
 6.0
 1.4
 2.7
 4.6
 4.7
 3.2
 0.7
 4.3
 1.2
0.3
 -0.7
-1.2
 1.8
1.7
 3.4
3.1
 0.2
-0.1
 2.4
0.9
 3.5
 3.0
 1.9
 1.7
 2.6
0.2
 0.5
0.1
8 RD19 Papain family cysteine protease 830064 At4g39090 6.0 4.5
 5.8
 266.3
 5.1
 2.7
 2.9
 2.9
 1.1
 4.3
 2.4
1.1
 1.0
0.7
 4.5
4.5
 5.0
4.0
 2.3
1.4
 5.7
5.6
 7.4
1.6
 4.7
3.5
 6.0
0.4
 9.0
-0.4
 5.0
4.9
 5.6
2.0
9 ALP aleurain-like protease 836158 At5g60360 5.9 4.8
 5.5
 157.0
 2.0
 3.9
 2.5
 2.7
 3.0
 2.8
 1.2
-0.7
 -0.3
 4.0
 2.4
 1.9
 4.6
 3.1
3.0
 5.0
4.9
 3.5
-1.0
 7.0
-0.9
 5.1
 0.7
10 AT1G34060 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 840303 At1g34060 5.8 6.3






4.6
 1.1
0.2
 1.4
1.2
 1.3
-0.3
 1.5
-0.7
 0.5
 4.8



4.4
0.7
 2.5
-1.2
11 AT5G18130 uncharacterized protein 831931 At5g18130 5.6 4.6
 5.1
 4.5
 4.2
 3.7
 2.3
 5.2
 0.6
 7.0
 0.7
0.6
 0.1
-0.4
 2.5
1.1
 2.7
2.5
 0.2
-1.0
 3.6
2.7
 4.8
4.4
 1.6
0.4
 4.2
3.5
 3.5
1.6
 3.7
 0.6
12 AT5G54870 inositol-1,4,5-trisphosphate 5-phosphatase 835578 At5g54870 5.5 4.9
 4.7
 80.4
 2.2
 2.8
 2.3
 2.0
 4.7
 2.0
 2.7
0.6
 0.5
0.3
 1.6
1.0
 1.8
1.3
 0.0
-0.6
 2.0
1.8
 3.9
 3.9
 4.5
1.7
 2.2
1.5
 3.7
 1.2
13 APA1 aspartic proteinase A1 837740 At1g11910 5.3 5.3
 3.9
 26.5
 3.4
 4.3
 3.5
 2.8
 2.4
 3.4
 6.5
2.6
 1.4
1.2
 5.7
4.6
 5.0
4.4
 2.3
1.7
 3.8
2.0
 3.0
2.6
 5.0
2.9
 2.9
2.2
 2.8
2.2
 3.8
1.8
 2.7
1.8
14 DUR3 urea-proton symporter DEGRADATION OF UREA 3 (DUR3) 834574 At5g45380 5.3 4.5
 4.7
 168.5
 2.1
 1.7
 0.5
 3.8
 1.6
 2.4
 1.1
 -0.6
 1.8
 2.0
 0.6
 3.6
 3.2
 1.6
 2.8
 -0.3
 1.7
 1.7
15 AT5G05110 Cystatin/monellin family protein 830393 At5g05110 5.2 4.6
 4.5
 36.8
 5.3
 3.4
 2.8
 3.2
 2.7
 3.1
 2.9










16 PMSR1 peptidemethionine sulfoxide reductase 1 836286 At5g61640 5.2 4.4
 4.5
 47.7
 3.6
 3.0
 3.4
 3.4
 1.9
 3.7
 1.5
1.4
 0.5
0.1
 1.9
1.6
 1.7
1.2
 0.6
0.5
 1.7
1.6
 2.6
-0.1
 3.1
0.5
 3.6
0.7
 2.2
1.0
 0.3
0.1
 1.8
0.7
17 AT1G02305 Cysteine proteinases superfamily protein 839538 At1g02305 5.1 5.0
 3.9
 26.7
 5.1
 4.9
 4.4
 2.2
 1.8
 3.5
 1.8
1.7
 0.8
-0.4
 4.3
4.2
 5.3
3.8
 1.5
1.1
 3.5
3.0
 2.4
1.9
 2.7
1.5
 2.8
2.2
 3.6
2.6
 3.9
 1.6
18 AT3G14067 Subtilase family protein 820621 At3g14067 5.0 4.5
 4.2
 44.8
 2.9
 2.9
 3.8
 1.6
 1.9
 3.3
 0.4
 -0.2
-0.5
 1.8
1.3
 0.9
0.7
 2.0
1.7
 5.2
0.1
 2.8
 2.8
 3.3
 2.4
 0.7
 0.6
19 AT1G70160 zinc finger MYND domain protein 843352 At1g70160 5.0 5.1
 3.4
 5.3
 2.3
 4.9
 3.3
 3.8
 0.6
 2.2
 0.7
 0.8
0.3
 4.5
3.3
 2.7
2.3
 -0.0
 1.4
 4.8
 6.2
 2.6
 2.1
 1.7
-0.4
 1.0
0.3
20 ATG18G autophagy 18 G-like protein 838702 At1g03380 4.9 4.7
 3.8
 2.5
 4.5
 5.2
 3.8
 3.4
 1.9
 2.9
 2.4
0.8
 0.6
-0.3
 2.1
1.9
 1.6
1.2
 1.0
0.2
 1.3
1.1
 2.8
1.1
 3.3
2.7
 2.3
 1.0
 1.9
 0.8
21 ALN allantoinase 825836 At4g04955 4.7 4.8
 3.3
 3199.5
 2.2
 -0.9
 2.1
 2.0
 1.8
 2.7
 -0.5
 0.6
-0.5
 2.2
0.3
 1.7
0.1
 0.3
 0.2
 1.4
 1.9
 5.7
 -0.4
 3.7
 1.1
22 AT4G19860 alpha/beta-Hydrolases superfamily protein 827730 At4g19860 4.7 4.1
 4.0
 25.3
 3.1
 3.5
 3.5
 3.0
 0.4
 3.7
 2.2
 -0.8
-1.4
 3.8
3.1
 4.6
4.5
 1.3
0.9
 2.0
1.9
 4.5
 6.4
 4.6
 5.3
 3.1
 0.7
23 BBD1 bifunctional nuclease in basal defense response 1 843874 At1g75380 4.6 5.0






5.6
 0.3
-0.0
 0.4
 0.3
 0.1
 1.1
 3.0
 4.0
3.8
 3.8
3.2
 3.9
2.8
 7.3
6.8
 2.6
 -0.4
24 AT5G16550 voltage-dependent L-type calcium channel subunit 831517 At5g16550 4.6 4.1
 3.8
 509.1
 1.8
 1.6
 3.2
 0.3
 2.5
 1.2
 1.3
 -0.4
-0.5
 2.2
1.2
 3.3
2.2
 0.6
 1.2
 1.6
0.9
 3.1
0.4
 2.3
 1.8
 0.6
 0.2
25 AT3G03870 uncharacterized protein 821099 At3g03870 4.6 4.5
 3.4
 36.0
 4.8
 2.9
 3.0
 2.9
 0.5
 5.7
 0.7
0.6
 0.1
-0.4
 2.5
1.1
 2.7
2.5
 0.2
-1.0
 3.6
2.7
 4.8
4.4
 1.6
0.4
 4.2
3.5
 3.5
1.6
 3.7
 0.6
26 NPC1 non-specific phospholipase C1 837234 At1g07230 4.5 3.7
 4.2
 8.3
 2.9
 3.4
 2.6
 5.1
 -0.2
 3.1
 1.3
 -0.1
-1.0
 3.2
0.7
 4.8
2.1
 -0.1
 1.3
 3.5
 2.6
 2.8
 1.6
 1.8
 0.4
27 AT1G22930 T-complex protein 11 838900 At1g22930 4.5 4.9
 2.9
 132.6
 4.1
 1.8
 3.0
 1.4
 1.8
 3.2
 1.6
0.3
 -0.1
-0.7
 2.3
1.0
 2.0
1.0
 0.9
-0.0
 1.6
0.9
 1.8
 2.1
 2.1
1.3
 1.9
1.0
 3.6
0.8
 1.2
0.8
28 AT1G44770 elongation factor 841041 At1g44770 4.5 4.4
 3.3
 44.8
 3.1
 2.7
 3.8
 2.4
 2.4
 2.4
 1.4
 -1.1
-1.2
 2.1
0.7
 2.0
1.4
 1.7
 3.3
 2.7
 5.4
 2.5
0.4
 2.0
1.2
 3.2
 1.4
29 AT4G31130 keratin-associated protein (DUF1218) 829241 At4g31130 4.4 4.6
 3.1
 1794.0
 1.9
 -0.7
 1.4
 3.1
 2.4
 3.0
 0.3
 1.0
0.3
 3.6
2.4
 2.5
1.6
 2.6
0.9
 4.8
1.8
 1.1
 0.9
 2.1
 2.5
 2.7
 0.7
30 AT4G27020 inositol-1,4,5-trisphosphate 5-phosphatase 828810 At4g27020 4.4 4.5






0.9
 2.7
0.6
 0.5
0.3
 1.6
1.0
 1.8
1.3
 0.0
-0.6
 2.0
1.8
 3.9
 3.9
 4.5
1.7
 2.2
1.5
 3.7
 1.2
31 CAT2 cationic amino acid transporter 2 842170 At1g58030 4.3 4.2
 3.3
 53.1
 1.7
 4.1
 5.2
 1.4
 1.0
 2.5
 2.0
1.7
 0.4
-0.4
 2.8
1.7
 2.0
1.7
 1.8
1.2
 4.5
2.3
 2.5
2.1
 4.0
2.1
 3.0
0.8
 4.3
1.3
 2.3
 0.4
32 AT1G74410 RING/U-box superfamily protein 843782 At1g74410 4.3 2.9
 4.6
 20.7
 2.5
 3.7
 3.1
 3.4
 2.7
 1.1
 0.6
 -0.0
-0.0
 1.4
1.4
 3.0
2.2

2.2
 4.4

0.4
-0.3
 0.2
33 AT1G15740 Leucine-rich repeat family protein 838143 At1g15740 4.2 4.5
 2.8
 30.7
 3.0
 2.2
 3.1
 2.8
 1.5
 3.8
 0.5
 -0.5
-0.7
 2.2
1.9
 3.3
2.4
 2.3
 3.0
 4.5
4.0
 2.7
2.3
 4.1
1.3
 3.5
0.6
 4.3
3.1
 1.1
0.7
34 AT4G01610 Cysteine proteinases superfamily protein 826792 At4g01610 4.2 3.5
 3.8
 24.4
 2.5
 5.3
 2.6
 3.9
 1.2
 3.2
 1.8
1.7
 0.8
-0.4
 4.3
4.2
 5.3
3.8
 1.5
1.1
 3.5
3.0
 2.4
1.9
 2.7
1.5
 2.8
2.2
 3.6
2.6
 3.9
 1.6
35 AT2G37130 Peroxidase superfamily protein 818289 At2g37130 4.2 3.1
 4.2
 38.1
 2.1
 1.7
 1.0
 2.5
 1.3
 1.7
 0.7
 -1.5
-1.6
 1.7
0.8
 0.2
-0.1
 0.6
 1.5
 0.6
-0.3
 2.5
1.7
 0.5
0.3
 -0.4
-0.6
 0.2
 1.1
36 GSR 1 uncharacterized protein 833738 At5g37600 4.1 3.6
 3.6
 511.0
 2.8
 1.8
 0.7
 2.8
 3.6
 3.1
 2.2
1.2
 2.0
1.4
 2.4
2.1
 1.1
1.1
 2.9
2.6
 3.1
1.9
 0.8
-0.2
 1.0
0.3
 1.6
-0.4
 1.0
0.5
 2.5
1.1
 2.9
1.7
37 AT1G18470 Transmembrane Fragile-X-F-associated protein 838427 At1g18470 4.1 3.2
 3.9
 81.7
 3.4
 1.7
 2.7
 4.0
 1.1
 2.7
 1.9
1.5
 0.0
-0.5
 1.2
0.7
 3.1
1.4
 1.8
1.3
 2.5
2.1
 1.4
0.5
 2.8
1.3
 2.5
1.3
 2.2
2.0
 2.7
 0.3
38 UBC5 ubiquitin-conjugating enzyme 5 842683 At1g63800 4.1 3.1
 4.1
 151.7
 2.8
 1.3
 2.8
 1.9
 0.8
 -0.0
 0.5
0.4
 1.1
1.0
 2.8
2.2
 2.2
1.8
 1.8
1.2
 3.5
1.6
 1.2
-0.4
 2.7
1.5
 3.4
3.3
 3.8
2.4
 2.8
 0.7
39 XGD1 xylogalacturonan deficient 1 833302 At5g33290 4.1 4.2
 2.9
 408.8
 3.1
 2.7
 0.0
 3.2
 1.8
 4.9
 1.8
1.4
 0.5
0.2
 0.3
-0.0
 1.4
-0.3
 1.6
0.5
 1.5
0.8
 0.8
 0.5

0.2
 0.6
40 GLN1;4 glutamine synthetase 1;4 831519 At5g16570 4.1 4.4
 2.6
 179.6
 2.8
 0.9
 0.4
 2.5
 0.0
 3.4
 2.2
1.2
 2.0
1.4
 2.4
2.1
 1.1
1.1
 2.9
2.6
 3.1
1.9
 0.8
-0.2
 1.0
0.3
 1.6
-0.4
 1.0
0.5
 2.5
1.1
 2.9
1.7
41 CLPX CLP protease regulatory subunit X 835416 At5g53350 4.0 4.2
 2.8
 30.8
 2.4
 4.3
 1.3
 2.6
 1.3
 1.0
 1.5
 0.3
-0.5
 1.3
0.1
 2.8
2.6
 0.7
-0.1
 4.3
2.7
 2.8
 2.7
 1.2
 3.0
 2.5
 -0.8
42 AT5G19860 transmembrane protein, putative (Protein of unknown function, DUF538) 832107 At5g19860 4.0 2.8
 4.2
 21.0
 2.1
 3.2
 3.9
 3.0
 1.0
 1.8
 1.2
 0.1
-1.4
 4.3
2.2
 4.0
3.5
 1.3
0.9
 1.6
1.1
 2.3
 4.5
 0.2
-0.3
 0.9
0.4
 1.0
 0.5
43 KAI2 alpha/beta-Hydrolases superfamily protein 829902 At4g37470 4.0 3.2
 3.7
 178.0
 1.0
 2.6
 2.7
 2.1
 1.4
 2.4
 0.4
 1.1
0.8
 2.1
1.3
 0.6
0.2
 -0.3
-0.8
 0.6
0.1
 0.8
0.6
 -0.1
-0.5
 1.8
1.0
 2.0
1.2
 2.4
1.4
 0.6
0.1
44 ATI2 mesoderm induction early response protein 827659 At4g00355 4.0 4.2
 2.7
 9.8
 3.0
 3.3
 5.2
 4.0
 1.5
 1.9
 0.6
-0.3
 -0.0
-0.1
 3.6
1.6
 3.2
1.3
 1.5
0.4
 3.1
2.1
 2.6
 3.9
 2.7
0.1
 1.5
-0.7
 5.0
1.1
 1.7
1.3
45 HK3 histidine kinase 3 839621 At1g27320 4.0 4.2
 2.7
 64.7
 2.9
 1.8
 2.7
 2.2
 1.8
 1.2
 0.7
 -0.4
-1.1
 0.6
0.4
 1.4
0.3
 0.9
-0.0
 1.6
1.4
 2.8
1.8
 2.9
1.8
 2.3
 1.7
 2.8
 0.6
46 AT3G11810 uncharacterized protein 820354 At3g11810 4.0 4.0






1.3
 1.7
0.1
 -0.2
-0.3
 0.5
0.4
 0.9
0.8
 0.2
-0.2
 1.4
1.1
 0.9
0.3
 0.9
0.2
 2.2
0.6
 2.8
-0.2
 2.0
 0.2
47 AT1G19660 Wound-responsive family protein 838553 At1g19660 3.9 4.1






5.4
 0.3
-0.0
 0.4
 0.3
 0.1
 1.1
 3.0
 4.0
3.8
 3.8
3.2
 3.9
2.8
 7.3
6.8
 2.6
 -0.4
48 PLC2 phospholipase C 2 819999 At3g08510 3.9 3.5
 3.3
 369.8
 1.3
 1.8
 3.5
 1.1
 -0.4
 0.7
 0.7
0.6
 0.8
0.4
 1.9
1.3
 1.7
1.6
 1.8
0.3
 1.1
0.2
 1.9
0.4
 1.6
1.2
 3.2
1.2
 5.1
2.7
 1.9
-0.9
 1.4
-0.6
49 SIP1A small and basic intrinsic protein 1A 819564 At3g04090 3.9 3.6
 3.1
 2093.6
 1.5
 1.3
 0.6
 3.0
 2.0
 1.9
 0.9
0.5
 2.7
0.4
 3.0
1.3
 0.6
0.2
 1.6
1.6
 1.4
0.5
 0.5
-0.5
 2.5
2.3
 1.7
-0.2
 2.6
1.2
 1.1
 0.6
50 PRXR1 Peroxidase superfamily protein 828285 At4g21960








1.3
 0.2
 1.2
 1.7
 -0.9
 1.0
 1.5
 1.4
 0.1
 1.4

The preparation time of this page was 1.2 [sec].