Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   CIP4   COP1-interacting protein 4 
 ath-r.6   CIP4   COP1-interacting protein 4 
 ath-e.1   CIP4   COP1-interacting protein 4 
 ath-u.4   CIP4.1   COP1-interacting protein 4.1 
 gma-u.4   100802021   uncharacterized LOC100802021 
 gma-u.4   100800066   midasin 
 ppo-u.4   7477064   uncharacterized LOC7477064 
 mtr-u.4   11422175   E3 ubiquitin-protein ligase RBBP6 
 sly-u.4   101251779   serine-rich adhesin for platelets-like 

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Top 50 coexpressed genes to CIP4 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3450   Non-homologous end-joining  1 8 -
 ath3008   Ribosome biogenesis in eukaryotes  2 96 -
 ath3013   Nucleocytoplasmic transport  1 103 -
 ath3018   RNA degradation  1 113 -
 ath3040   Spliceosome  2 203 -

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ath:CIP4 (COP1-interacting protein 4) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
CIP4
ath-r.6
for
CIP4
ath-e.1
for
CIP4
ath-u.4
for
CIP4.1
gma-u.4
for
100802021
gma-u.4
for
100800066
ppo-u.4
for
7477064
mtr-u.4
for
11422175
sly-u.4
for
101251779
1 AT1G03365 RING/U-box superfamily protein 10723112 At1g03365 7.6 8.1
 5.2
 4.7
3.2
 2.2
2.0
 3.6
3.1
 1.2
0.4
 3.8
0.5
 3.0
1.7
2 AT5G17930 MIF4G domain-containing protein / MA3 domain-containing protein 831661 At5g17930 7.5 8.4
 4.1
 6.6
 2.3
1.6
 3.4
2.7
 2.8
 6.0
 3.6
3 AT5G40520 DNA double-strand break repair protein 834050 At5g40520 7.5 7.9
 3.1
 5.6
 4.8
 4.3
 1.8
1.6
 3.4
 3.6
4 CIP4.1 COP1-interacting protein 4.1 827980 At4g00930 6.9 7.4
 4.7
 6.9
 11.8
 11.8


5 AT5G50310 Galactose oxidase/kelch repeat superfamily protein 835096 At5g50310 6.7 7.1
 3.5
 6.4
 5.6
5.2
 7.7
6.6
 1.8
 2.7
 6.1
6 EMB2279 pentatricopeptide (PPR) repeat-containing protein 839941 At1g30610 6.5 6.4
 5.3
 3.7
 2.7
 2.7
 1.3
 2.4
 0.2
7 CFM3B CRM family member 3B 827098 At4g14510 6.5 6.4
 6.0
 3.9
3.4
 3.7
 4.2
 0.6
 0.9
 1.9
8 NIH nuclear DEIH-boxhelicase 837177 At1g06670 6.4 6.6
 3.5
 7.4
4.2
 3.2
2.5
 5.0
4.0
 3.7
 5.9
 3.8
9 AT4G19610 nucleotide/nucleic acid binding protein 827703 At4g19610 6.3 6.6
 5.2
 5.7
 4.7
3.5
 5.9
1.3
 2.3
 5.6
3.0
 6.1
10 KU80 Ku80 family protein 841223 At1g48050 6.2 6.8
 2.9
 3.5
 1.9
 1.9
 1.8
 4.0
 1.3
11 LINC3 little nuclei3 843210 At1g68790 6.2 6.5
 4.6
 7.0
5.4
 5.3
5.2
 5.3
4.7
 3.3
3.2
 4.3
2.1
 3.4
2.2
12 emb1579 ATP/GTP-binding protein family 814844 At2g03150 6.0 6.5
 5.0
 4.8
 5.9
3.8
 4.5
4.4
 3.4
 3.2
 3.4
13 SDG25 SET domain protein 25 834246 At5g42400 6.0 6.2
 2.9
 4.2
 1.3
0.2
 2.4
1.3
 2.5
1.3
 1.2
 0.4
14 ESP3 RNA helicase family protein 840143 At1g32490 5.9 5.9
 1.4
 4.5
1.8
 4.3
3.4
 4.8
4.3
 2.8
 3.6
1.3
 1.7
0.2
15 AT2G36720 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 818244 At2g36720 5.8 6.3
 2.3
 3.2
2.7
 1.9
1.4
 1.2
1.0
 3.3
3.3
 3.4
2.6
 1.5
0.8
16 AT1G18950 DDT domain superfamily 838476 At1g18950 5.7 6.0
 5.8
 3.6
 2.9
2.5
 3.5
3.2
 1.5
1.2
 2.4
 2.5
17 HOS1 ubiquitin-protein ligase 818568 At2g39810 5.7 5.9
 2.3
 5.5
 4.7
4.4
 5.6
4.8
 2.6
1.4
 6.2
 3.6
18 ABCF4 general control non-repressible 4 824619 At3g54540 5.7 5.6
 3.5
 3.3
 1.8
1.3
 4.2
2.7
 1.4
0.2
 4.1
1.0
 3.9
19 TOP1ALPHA DNA topoisomerase I alpha 835623 At5g55300 5.6 5.8
 3.7
 3.9
3.5
 2.8
2.0
 2.8
2.2
 3.9
2.8
 5.1
2.5
 2.0
20 AT3G19740 P-loop containing nucleoside triphosphate hydrolases superfamily protein 821511 At3g19740 5.6 6.0
 2.6
 5.2
1.8
 3.8
2.5
 2.8
1.7
 1.4
1.1
 3.7
 3.4
21 PKL chromatin remodeling factor CHD3 (PICKLE) 817055 At2g25170 5.6 6.1
 3.7
 5.1
 4.2
3.3
 6.0
4.0
 3.8
2.6
 2.7
 1.6
1.3
22 AT2G20280 Zinc finger C-x8-C-x5-C-x3-H type family protein 816547 At2g20280 5.6 5.8
 3.2
 3.9
 1.6
1.5
 2.5
2.1
 1.3
1.2
 2.3
 4.5
23 AT5G38840 SMAD/FHA domain-containing protein 833875 At5g38840 5.6 5.7
 3.5
 5.3
 4.3
2.6
 5.8
3.7
 1.1
 2.3
 5.0
24 EMB976 Tetratricopeptide repeat (TPR)-like superfamily protein 832785 At5g27270 5.5 5.7
 3.5
 3.6
 4.5
 4.2
 2.1
1.4
 1.7
 0.7
25 AT3G47910 Ubiquitin carboxyl-terminal hydrolase-related protein 823946 At3g47910 5.5 5.9
 3.0
 5.8
5.5
 4.1
2.9
 5.4
3.2
 2.5
1.7
 3.2
 2.1
1.8
26 PEX1 peroxisome 1 830746 At5g08470 5.4 5.4
 1.9
 2.3
 2.1
 2.1
 0.8
 0.5
 -0.3
27 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 816683 At2g21440 5.4 5.3
 3.1
 7.4
 7.1
6.6
 8.9
7.5
 3.1
 10.1
 6.3
28 PRHA pathogenesis related homeodomain protein A 829117 At4g29940 5.3 6.1
 4.7
 4.2
 4.4
3.5
 3.7
2.9
 2.1
0.9
 2.5
 -0.5
29 AT5G55660 DEK domain-containing chromatin associated protein 835660 At5g55660 5.3 5.4
 5.4
 5.8
3.3
 5.6
5.2
 5.6
5.1
 3.5
 2.4
 2.6
-0.2
30 SDN3 small RNA degrading nuclease 3 836859 At5g67240 5.3 5.1
 5.2
 4.8
3.2
 5.0
 6.0
 1.6
 5.1
 6.0
31 B160 protein B160 827895 At4g21430 5.3 5.5
 3.6
 3.6
 4.2
1.4
 3.4
1.9
 1.0
0.7
 3.5
3.1
 -0.2
32 AT2G19260 RING/FYVE/PHD zinc finger superfamily protein 816443 At2g19260 5.3 5.6
 3.6
 4.5
 1.6
1.5
 3.1
2.2
 1.9
1.0
 1.4
 1.1
33 AT5G46070 Guanylate-binding family protein 834648 At5g46070 5.2 5.5
 4.5
 6.0
 4.0
2.7
 4.5
2.9
 2.1
1.4
 4.5
 3.9
2.6
34 AT3G23900 RNA recognition motif (RRM)-containing protein 821973 At3g23900 5.2 5.0
 3.9
 4.1
 1.7
 1.5
 4.4
2.6
 3.0
 3.3
35 AT4G08310 DNA ligase 826385 At4g08310 5.2 5.3
 3.0
 5.5
4.5
 4.3
3.7
 5.3
5.0
 2.0
1.8
 4.4
 3.7
36 THO2 THO2 839081 At1g24706 5.1 5.2
 4.7
 5.1
 4.7
3.7
 5.1
4.2
 3.5
3.1
 5.2
3.1
 3.4
37 emb1417 Pentatricopeptide repeat (PPR) superfamily protein 827867 At4g21190 5.1 5.0
 5.0
 3.0
 2.2
1.2
 2.3
2.0
 0.3
 1.2
 0.8
38 AT3G54760 dentin sialophosphoprotein-like protein 824641 At3g54760 5.1 5.5
 5.6
 5.3




39 PPR40 pentatricopeptide (PPR) domain protein 40 820944 At3g16890 5.1 5.3
 2.4
 3.6
 3.5
 3.1
 1.2
 3.8
 1.6
40 GTE6 general transcription factor group E6 824393 At3g52280 5.1 5.4
 3.3
 3.9
2.0
 4.2
1.5
 3.1
3.1
 4.0
3.3
 4.0
0.7
 1.4
0.7
41 AT3G21290 dentin sialophosphoprotein-like protein 821683 At3g21290 5.0 5.2
 4.4
 3.4
 3.8
3.1
 4.6
4.1
 2.2
 2.5
2.0
 2.6
42 AT3G58220 TRAF-like family protein 824991 At3g58220 5.0 5.3
 1.5
 2.6
1.8




43 AT5G49430 WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein 835003 At5g49430 5.0 5.4
 2.2
 2.9
1.3
 3.5
3.1
 3.3
3.0
 2.2
1.8
 2.9
1.6
 2.0
1.2
44 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 824075 At3g49140 5.0 4.9
 3.6
 2.3
-0.2
 1.4
0.9
 1.4
0.7
 0.9
0.0
 0.9
 -0.7
-1.4
45 AT4G26190 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 828725 At4g26190 5.0 5.3
 3.9
 5.4
0.7
 5.4
4.3
 4.7
2.1
 1.5
0.8
 3.4
1.0
 2.0
-0.1
46 AT3G47890 Ubiquitin carboxyl-terminal hydrolase-related protein 823944 At3g47890 5.0 5.3
 2.9
 5.8
5.5
 4.1
2.9
 5.4
3.2
 2.5
1.7
 3.2
 2.1
1.8
47 AT2G27980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 817342 At2g27980 5.0 5.1
 4.9
 3.2
2.7
 1.9
1.4
 1.2
1.0
 3.3
3.3
 3.4
2.6
 1.5
0.8
48 AT1G76280 Tetratricopeptide repeat (TPR)-like superfamily protein 843961 At1g76280 4.9 4.9
 2.3
 3.3
 1.7
 1.5
 2.0
 4.2
 1.6
49 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 825073 At3g59040 4.9 4.8
 4.1
 2.2
 1.2
1.1
 2.1
2.1
 1.1
 0.5
 -0.0
50 AT5G58450 Tetratricopeptide repeat (TPR)-like superfamily protein 835958 At5g58450 4.9 5.0
 1.7
 4.2
 3.7
2.6
 2.4
1.6
 2.1
 3.1
 1.0
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