KEGG 00906 Carotenoid biosynthesis
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 12
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 39
gma00860 Porphyrin and chlorophyll metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 14
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 13
osa04075 Plant hormone signal transduction 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 21
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 16
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 13
mtr00900 Terpenoid backbone biosynthesis 6
Gene list in the network
Symbol Function*
ZDS zeta-carotene desaturase
LYC lycopene cyclase
CYP707A4 cytochrome P450, family 707, subfamily A, polypeptide 4
LUT1 Cytochrome P450 superfamily protein
PDS3 phytoene desaturase 3
NCED4 nine-cis-epoxycarotenoid dioxygenase 4
BETA-OHASE 1 beta-hydroxylase 1
MRL1 Pentatricopeptide repeat (PPR) superfamily protein
PSY PHYTOENE SYNTHASE
DES1 L-cysteine desulfhydrase 1
BETA-OHASE 2 beta-carotene hydroxylase 2
LUT2 Lycopene beta/epsilon cyclase protein
ftsh9 FTSH protease 9
ABCF5 general control non-repressible 5
ABA1 zeaxanthin epoxidase (ZEP) (ABA1)
NDA1 alternative NAD(P)H dehydrogenase 1
CYP97A3 cytochrome P450, family 97, subfamily A, polypeptide 3
AT1G79600 Protein kinase superfamily protein
Symbol Function*
PDS1 phytoene desaturase
MYB81 MYB transcription factor MYB81
LOC100170674 abscisic acid 8'-hydroxylase
LOC100306207 uncharacterized LOC100306207
LOC100500225 nucleobase-cation symporter1 family protein
LOC100776502 zeta-carotene desaturase, chloroplastic/chromoplastic
LOC100776503 phytoene synthase, chloroplastic-like
LOC100778086 abscisate beta-glucosyltransferase
LOC100778118 violaxanthin de-epoxidase, chloroplastic-like
LOC100779810 abscisic acid 8'-hydroxylase 1
LOC100779978 abscisic acid 8'-hydroxylase 4
LOC100780482 divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic
CYP707A1A abscisic acid 8'-hydroxylase 1
CYP97C10 protein LUTEIN DEFICIENT 5, chloroplastic
LOC100781113 abscisic-aldehyde oxidase
LOC100783830 lycopene beta cyclase, chloroplastic
CHLI Mg-protoporphyrin IX chelatase subunit ChlI
BCH2 beta-carotene hydroxylase BCH2
LOC100788180 lycopene epsilon cyclase, chloroplastic
LOC100790686 lycopene epsilon cyclase, chloroplastic
LOC100791400 protein LUTEIN DEFICIENT 5, chloroplastic
LOC100793868 abscisic acid 8'-hydroxylase 4
LOC100793910 15-cis-zeta-carotene isomerase
LOC100797221 carotene epsilon-monooxygenase, chloroplastic
LOC100798275 prolycopene isomerase, chloroplastic
CCD7 carotenoid cleavage dioxygenase 7
LOC100803324 carotene epsilon-monooxygenase, chloroplastic
LOC100806350 abscisic acid 8'-hydroxylase 4
LOC100807446 abscisic acid 8'-hydroxylase 1
LOC100807453 phytoene synthase 2, chloroplastic
LOC100808213 probable transmembrane GTPase FZO-like, chloroplastic
LOC100808827 short-chain dehydrogenase/reductase family 42E member 1
LOC100809518 carboxyl-terminal-processing peptidase 2, chloroplastic
LOC100810895 lycopene beta cyclase, chloroplastic
LOC100811518 phytoene synthase 2, chloroplastic
LOC100811616 prolycopene isomerase, chloroplastic
LOC100811700 abscisate beta-glucosyltransferase
LOC100812604 abscisic-aldehyde oxidase
BCH5 beta-carotene hydroxylase 5
LOC100814148 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
LOC100815135 abscisic acid 8'-hydroxylase 4
LOC100815146 abscisate beta-glucosyltransferase
LOC100816085 violaxanthin de-epoxidase, chloroplastic-like
LOC100816122 zeta-carotene desaturase, chloroplastic/chromoplastic
LOC100817119 phytoene synthase 2, chloroplastic
LOC100820171 zeaxanthin epoxidase, chloroplastic-like
LOC100820507 15-cis-zeta-carotene isomerase, chloroplastic
Symbol Function*
zds zeta-carotene desaturase
PSY2 phytoene synthase 2, chloroplastic
Psy1 phytoene synthase 1, chloroplastic
pds phytoene desaturase
LCY1 lycopene beta-cyclase
CrtR-b1 beta-carotene hydroxylase
ZEP zeaxanthin epoxidase, chloroplastic
CYP97A29 cytochrome P450-type monooxygenase 97A29
CYP97C11 cytochrome P450-type monooxygenase 97C11
Z-ISO 15-cis-zeta-carotene isomerase
LOC101254297 xanthoxin dehydrogenase
LOC101254591 xanthoxin dehydrogenase
ABCF1 ABC transporter F family member 1
LOC101267662 lycopene beta cyclase, chloroplastic
CRTISO prolycopene isomerase, chloroplastic
Symbol Function*
LOC4327465 probable protein phosphatase 2C 9
LOC4330838 bZIP transcription factor 23-like
LOC4331460 beta-carotene hydroxylase 2, chloroplastic
LOC4331854 15-cis-phytoene desaturase, chloroplastic/chromoplastic
LOC4333566 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
LOC4336753 beta-carotene hydroxylase 2, chloroplastic
LOC4338768 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like
LOC4339759 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
LOC4342137 phytoene synthase 2, chloroplastic
LOC4342424 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like
LOC4342680 zeta-carotene desaturase, chloroplastic/chromoplastic
LOC4345810 abscisic acid 8'-hydroxylase 2-like
LOC4347252 transcription factor HEC2
LOC4347813 phytoene synthase 2, chloroplastic
LOC4347913 probable anion transporter 4, chloroplastic
LOC4349224 beta-carotene hydroxylase 2, chloroplastic
LOC4352042 15-cis-zeta-carotene isomerase, chloroplastic
LOC4352846 phytoene synthase 2, chloroplastic
LOC9270250 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
Symbol Function*
LOC542604 zeta carotene desaturase candidate
LOC542686 phytoene synthase 2
LOC732775 beta-carotene hydroxylase
LOC732819 viviparous14
LOC100136882 yellow endosperm 1
LOC100191697 uncharacterized LOC100191697
LOC100192073 uncharacterized LOC100192073
LOC100273156 uncharacterized LOC100273156
LOC100274595 uncharacterized LOC100274595
LOC100279745 uncharacterized LOC100279745
LOC100281366 violaxanthin de-epoxidase
LOC100281391 uncharacterized LOC100281391
LOC100281620 sialin
LOC100281693 beta-carotene hydroxylase
LOC100282657 uncharacterized LOC100282657
LOC100285076 zeaxanthin epoxidase
LOC100285911 uncharacterized LOC100285911
LOC100383693 putative cytochrome P450 superfamily protein
LOC100501454 nine-cis-epoxycarotenoid dioxygenase6
LOC100502521 uncharacterized LOC100502521
LOC100502522 uncharacterized LOC100502522
LOC103627610 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
LOC103627895 protein LUTEIN DEFICIENT 5, chloroplastic
LOC103630537 EID1-like F-box protein 3
LOC103631225 beta-carotene 3-hydroxylase, chloroplastic
LOC103641704 zeaxanthin epoxidase, chloroplastic
LOC109940986 phytoene synthase 2, chloroplastic
Symbol Function*
LOC103829545 zeaxanthin epoxidase, chloroplastic
LOC103842019 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
LOC103843494 prolycopene isomerase, chloroplastic
LOC103844689 pentatricopeptide repeat-containing protein At1g01970
LOC103846262 phytoene synthase, chloroplastic
LOC103849152 zeta-carotene desaturase, chloroplastic/chromoplastic
LOC103849374 abscisic acid 8'-hydroxylase 2
LOC103851090 phytoene synthase, chloroplastic-like
LOC103853454 uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic-like
LOC103856237 phytoene synthase, chloroplastic-like
LOC103857159 probable carotenoid cleavage dioxygenase 4, chloroplastic
LOC103858688 thionin
BCH beta-carotene 3-hydroxylase 1, chloroplastic
LOC103863442 beta-carotene 3-hydroxylase 1, chloroplastic
LOC103868504 TSK-associating protein 1
LOC103868505 beta-D-glucopyranosyl abscisate beta-glucosidase
LOC103869757 jacalin-related lectin 35
LOC103870025 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
LOC103870482 lycopene beta cyclase, chloroplastic
LOC103871211 beta-D-glucopyranosyl abscisate beta-glucosidase-like
LOC103871859 15-cis-zeta-carotene isomerase, chloroplastic
LOC103872491 solanesyl diphosphate synthase 2, chloroplastic
LOC103873520 probable carboxylesterase 12
Symbol Function*
NCED1 9-cis-epoxycarotenoid dioxygenase 1
NCED2 9-cis-epoxycarotenoid dioxygenase 2
LOC100245154 zeta-carotene desaturase, chloroplastic/chromoplastic
LOC100255091 bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial
LOC100258367 15-cis-zeta-carotene isomerase, chloroplastic
LOC100263250 prolycopene isomerase, chloroplastic
Symbol Function*
LOC7455022 protein DMR6-LIKE OXYGENASE 1
LOC7462609 zeaxanthin epoxidase, chloroplastic
LOC7462922 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
LOC7464659 phytoene synthase 2, chloroplastic
LOC7470743 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
LOC7472358 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
LOC7480715 phytoene synthase 2, chloroplastic
LOC7496830 cysteine-rich receptor-like protein kinase 42
Symbol Function*
LOC11405673 1-aminocyclopropane-1-carboxylate oxidase homolog 1
LOC11407094 geranylgeranyl pyrophosphate synthase 7, chloroplastic
LOC11409691 protein LUTEIN DEFICIENT 5, chloroplastic
LOC11413255 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
LOC11415565 abscisic acid 8'-hydroxylase 1
LOC11415648 zeta-carotene desaturase, chloroplastic/chromoplastic
LOC11417046 neoxanthin synthase, chloroplastic
LOC11422578 abscisic acid 8'-hydroxylase 1
LOC11423389 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
LOC11424712 cytochrome P450 76A1
LOC11425310 type I inositol polyphosphate 5-phosphatase 2
LOC11432737 phytoene dehydrogenase, chloroplastic/chromoplastic
LOC11435230 protein ORANGE, chloroplastic
LOC11437285 phytoene synthase 2, chloroplastic
LOC11437558 15-cis-zeta-carotene isomerase, chloroplastic
LOC11438073 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
LOC11438975 carotenoid cleavage dioxygenase 7, chloroplastic
LOC11440521 abscisic acid 8'-hydroxylase 1
LOC11440775 uncharacterized LOC11440775
LOC11443066 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic
LOC25483622 prolycopene isomerase, chloroplastic
LOC25485781 beta-carotene isomerase D27, chloroplastic
LOC25487999 ent-kaurene oxidase, chloroplastic
LOC25490129 carotenoid 9,10(9',10')-cleavage dioxygenase
LOC25490472 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic
LOC25492711 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic
LOC25498595 protein SRG1
LOC25498599 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
LOC25501419 putative receptor-like protein kinase At3g47110


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