KEGG 00906 Carotenoid biosynthesis

29  ath genes in this database.
64  gma genes in this database.
36  sly genes in this database.
32  osa genes in this database.
43  zma genes in this database.
47  bra genes in this database.
35  vvi genes in this database.
54  ppo genes in this database.
40  mtr genes in this database.
87  tae genes in this database.

List of genes in ath


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
817257 O, N AAO3 abscisic aldehyde oxidase 3
817457 S, C CYP707A2 cytochrome P450, family 707, subfamily A, polypeptide 2
819107 C, N CCD7 carotenoid cleavage dioxygenase 7
819647 C, C ZDS zeta-carotene desaturase
820185 O, Y LYC lycopene cyclase
820667 C, C NCED3 nine-cis-epoxycarotenoid dioxygenase 3
821461 S, C CYP707A4 cytochrome P450, family 707, subfamily A, polypeptide 4
822008 M, C_M NCED6 nine-cis-epoxycarotenoid dioxygenase 6
824479 C, C LUT1 Cytochrome P450 superfamily protein
827061 C, C PDS3 phytoene desaturase 3
827562 O, C NCED2 nine-cis-epoxycarotenoid dioxygenase 2
827655 C, C NCED4 nine-cis-epoxycarotenoid dioxygenase 4
827663 S, C CYP707A1 cytochrome P450, family 707, subfamily A, polypeptide 1
828675 C, C BETA-OHASE 1 beta-hydroxylase 1
829417 C, C CCD8 carotenoid cleavage dioxygenase 8
831587 C, C PSY PHYTOENE SYNTHASE
834570 S, C CYP707A3 cytochrome P450, family 707, subfamily A, polypeptide 3
835334 C, C BETA-OHASE 2 beta-carotene hydroxylase 2
835806 C, C LUT2 Lycopene beta/epsilon cyclase protein
836838 C, C ABA1 zeaxanthin epoxidase (ZEP) (ABA1)
837193 O, Y CRTISO carotenoid isomerase
837377 O, Y NPQ1 non-photochemical quenching 1
837626 C, C Z-ISO 15-cis-zeta-carotene isomerase
838334 M, N D27 beta-carotene isomerase D27-like protein
839889 C, N NCED5 nine-cis-epoxycarotenoid dioxygenase 5
840067 C, C CYP97A3 cytochrome P450, family 97, subfamily A, polypeptide 3
841665 O, Y ABA2 NAD(P)-binding Rossmann-fold superfamily protein
841670 S, V BGLU18 beta glucosidase 18
844175 O, C NCED9 nine-cis-epoxycarotenoid dioxygenase 9


List of genes in gma


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
547758 C, C BCH3 beta-carotene hydroxylase BCH3
547970 C, C PDS1 phytoene desaturase
100127420 C, C LOC100127420 15-cis-phytoene desaturase, chloroplastic/chromoplastic
100170674 S, C LOC100170674 abscisic acid 8'-hydroxylase
100776502 C, C LOC100776502 zeta-carotene desaturase, chloroplastic/chromoplastic
100776503 C, C LOC100776503 phytoene synthase, chloroplastic-like
100776690 O, C LOC100776690 phytoene synthase 2, chloroplastic
100777875 C, Y LOC100777875 probable carotenoid cleavage dioxygenase 4, chloroplastic
100778086 S, C LOC100778086 abscisate beta-glucosyltransferase
100778118 O, C LOC100778118 violaxanthin de-epoxidase, chloroplastic-like
100778602 M, C LOC100778602 zeaxanthin epoxidase, chloroplastic
100779810 S, C LOC100779810 abscisic acid 8'-hydroxylase CYP707A2
100779978 S, C LOC100779978 abscisic acid 8'-hydroxylase CYP707A1
100780284 C, X LOC100780284 probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
100780737 S, C CYP707A1A abscisic acid 8'-hydroxylase CYP707A2
100780770 C, C CYP97C10 protein LUTEIN DEFICIENT 5, chloroplastic
100780932 O, C LOC100780932 phytoene synthase, chloroplastic-like
100781113 O, Y LOC100781113 abscisic-aldehyde oxidase
100781659 O, Y LOC100781659 abscisic-aldehyde oxidase
100782394 C, C LOC100782394 phytoene synthase 2, chloroplastic
100782541 S, C LOC100782541 abscisic acid 8'-hydroxylase 2
100782912 O, C LOC100782912 beta-carotene isomerase D27, chloroplastic
100783830 O, Y LOC100783830 lycopene beta cyclase, chloroplastic
100785541 C, C BCH2 beta-carotene hydroxylase BCH2
100786428 S, C LOC100786428 abscisic acid 8'-hydroxylase CYP707A2
100786658 O, C LOC100786658 xanthoxin dehydrogenase
100786911 O, C LOC100786911 phytoene synthase 2, chloroplastic-like
100788180 C, C LOC100788180 lycopene epsilon cyclase, chloroplastic
100790686 C, C LOC100790686 lycopene epsilon cyclase, chloroplastic
100791400 C, C LOC100791400 protein LUTEIN DEFICIENT 5, chloroplastic
100793868 S, C LOC100793868 abscisic acid 8'-hydroxylase 4
100793910 C, C LOC100793910 15-cis-zeta-carotene isomerase
100794831 O, Y CCD8 carotenoid cleavage dioxygenase
100795056 C, X LOC100795056 carotenoid cleavage dioxygenase 7, chloroplastic
100795360 C, C LOC100795360 capsanthin/capsorubin synthase, chromoplastic
100797221 C, C LOC100797221 carotene epsilon-monooxygenase, chloroplastic
100797882 C, C NCED2 9-cis-epoxycarotenoid dioxygenase 2
100798275 C, C LOC100798275 prolycopene isomerase, chloroplastic
100798525 S, Y LOC100798525 abscisic acid 8'-hydroxylase CYP707A1
100800186 C, C ZEP zeaxanthin epoxidase
100801691 O, C LOC100801691 xanthoxin dehydrogenase
100802219 C, X CCD7 carotenoid cleavage dioxygenase 7
100802778 C, C BCH4 beta-carotene hydroxylase 4
100803324 C, C LOC100803324 carotene epsilon-monooxygenase, chloroplastic
100806350 S, C LOC100806350 abscisic acid 8'-hydroxylase 4
100807446 S, C LOC100807446 abscisic acid 8'-hydroxylase CYP707A2
100807453 C, C LOC100807453 phytoene synthase 2, chloroplastic
100810895 O, Y LOC100810895 lycopene beta cyclase, chloroplastic
100811518 C, C LOC100811518 phytoene synthase 2, chloroplastic
100811616 C, C LOC100811616 prolycopene isomerase, chloroplastic
100811700 O, N LOC100811700 abscisate beta-glucosyltransferase
100812604 O, E LOC100812604 abscisic-aldehyde oxidase
100813368 M, C BCH5 beta-carotene hydroxylase 5
100813404 O, C LOC100813404 beta-carotene isomerase D27, chloroplastic
100814148 C, C LOC100814148 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
100814399 C, C LOC100814399 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
100814646 M, C LOC100814646 beta-carotene isomerase D27, chloroplastic
100815135 S, P LOC100815135 abscisic acid 8'-hydroxylase CYP707A1
100815146 O, C LOC100815146 abscisate beta-glucosyltransferase
100816085 M, C LOC100816085 violaxanthin de-epoxidase, chloroplastic-like
100816122 C, C LOC100816122 zeta-carotene desaturase, chloroplastic/chromoplastic
100817119 C, C LOC100817119 phytoene synthase 2, chloroplastic
100820171 O, Y LOC100820171 zeaxanthin epoxidase, chloroplastic-like
100820507 C, C LOC100820507 15-cis-zeta-carotene isomerase, chloroplastic


List of genes in sly


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
543629 C, C zds zeta-carotene desaturase
543649 C, C NSY lycopene beta-cyclase, chromoplastic
543650 O, N AO1 aldehyde oxidase
543651 O, N TAO2 aldehyde oxidase
543652 O, N TAO3 aldehyde oxidase
543696 C, C VDE violaxanthin de-epoxidase
543964 O, C PSY2 phytoene synthase 2, chloroplastic
543988 C, C Psy1 phytoene synthase 1, chloroplastic
544073 C, C pds phytoene desaturase
544104 O, C LCY1 lycopene beta-cyclase
544129 C, C CrtL-e-1 lycopene epsilon-cyclase
544133 C, C CrtR-b1 beta-carotene hydroxylase
544162 C, M ZEP zeaxanthin epoxidase, chloroplastic
544163 C, M NCED1 9-cis-epoxycarotenoid dioxygenase
544297 C, M CrtR-b2 beta-carotene hydroxylase
100136887 S, K CYP707A1 abscisic acid 8'-hydroxylase CYP707A1
100313501 C, M CCD7 carotenoid cleavage dioxygenase 7
100316877 C, C NCED2 9-cis-epoxycarotenoid dioxygenase 2
100322875 C, C CYP97A29 cytochrome P450-type monooxygenase 97A29
100322877 C, C CYP97C11 cytochrome P450-type monooxygenase 97C11
101246826 C, C LOC101246826 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
101249565 S, C CYP707A2 abscisic acid 8'-hydroxylase CYP707A2
101250328 O, Y LOC101250328 ABA aldehyde oxidase
101250535 C, C LOC101250535 probable carotenoid cleavage dioxygenase 4, chloroplastic
101250828 C, C LOC101250828 probable carotenoid cleavage dioxygenase 4, chloroplastic
101253762 C, C Z-ISO 15-cis-zeta-carotene isomerase
101254297 O, Y LOC101254297 xanthoxin dehydrogenase
101254591 O, Y LOC101254591 xanthoxin dehydrogenase
101254620 O, Y LOC101254620 carotenoid cleavage dioxygenase 8, chloroplastic-like
101254720 S, C LOC101254720 abscisic acid 8'-hydroxylase 3
101256252 O, N LOC101256252 abscisic-aldehyde oxidase-like
101266560 O, M LOC101266560 beta-carotene isomerase D27, chloroplastic
101266767 S, N LOC101266767 abscisic acid 8'-hydroxylase 4
101267662 O, E LOC101267662 lycopene beta cyclase, chloroplastic
101267734 O, Y LOC101267734 phytoene synthase 3
101267857 O, Y CRTISO prolycopene isomerase, chloroplastic


List of genes in osa


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
4324196 C, C LOC4324196 lycopene epsilon cyclase, chloroplastic
4326177 C, C LOC4326177 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
4327933 C, C LOC4327933 carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like
4328572 C, C LOC4328572 lycopene beta cyclase, chloroplastic
4330451 C, C LOC4330451 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
4331152 C, C LOC4331152 protein LUTEIN DEFICIENT 5, chloroplastic
4331460 M, C LOC4331460 beta-carotene hydroxylase 2, chloroplastic
4331854 C, C LOC4331854 15-cis-phytoene desaturase, chloroplastic/chromoplastic
4333566 M, C LOC4333566 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
4334535 C, Y LOC4334535 zerumbone synthase
4335625 M, C LOC4335625 violaxanthin de-epoxidase, chloroplastic
4335984 C, Y LOC4335984 zeaxanthin epoxidase, chloroplastic-like
4336591 C, C LOC4336591 carotenoid cleavage dioxygenase 7, chloroplastic-like
4336753 C, C LOC4336753 beta-carotene hydroxylase 2, chloroplastic
4342137 C, Y LOC4342137 phytoene synthase 2, chloroplastic
4342424 C, C LOC4342424 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like
4342479 O, C LOC4342479 indole-3-acetaldehyde oxidase
4342680 C, C LOC4342680 zeta-carotene desaturase, chloroplastic/chromoplastic
4342930 S, N LOC4342930 putative aldehyde oxidase-like protein
4342932 O, N LOC4342932 probable aldehyde oxidase 4
4345810 S, C LOC4345810 abscisic acid 8'-hydroxylase 2-like
4347261 S, C LOC4347261 abscisic acid 8'-hydroxylase 3-like
4347813 C, C LOC4347813 phytoene synthase 2, chloroplastic
4349224 M, C LOC4349224 beta-carotene hydroxylase 2, chloroplastic
4349290 C, C LOC4349290 carotene epsilon-monooxygenase, chloroplastic
4350758 M, C LOC4350758 prolycopene isomerase 1, chloroplastic
4352042 C, C LOC4352042 15-cis-zeta-carotene isomerase, chloroplastic
4352125 C, C LOC4352125 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like
4352846 C, C LOC4352846 phytoene synthase 2, chloroplastic
9269675 S, C LOC9269675 abscisic acid 8'-hydroxylase 1-like
9270250 C, C LOC9270250 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
107276001 C, C LOC107276001 beta-carotene isomerase D27, chloroplastic


List of genes in zma


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
542329 C, C LOC542329 phytoene desaturase
542604 C, C LOC542604 zeta carotene desaturase candidate
542686 C, C LOC542686 phytoene synthase 2
732775 C, C LOC732775 beta-carotene hydroxylase
732819 C, C LOC732819 viviparous14
732825 C, C LOC732825 beta-carotene hydroxylase
100136882 C, C LOC100136882 yellow endosperm 1
100191697 S, C LOC100191697 uncharacterized LOC100191697
100194203 C, C LOC100194203 15-cis-zeta-carotene isomerase, chloroplastic
100273156 M, C LOC100273156 uncharacterized LOC100273156
100274595 S, C LOC100274595 uncharacterized LOC100274595
100277925 C, C LOC100277925 uncharacterized LOC100277925
100280448 C, C LOC100280448 uncharacterized LOC100280448
100281136 C, C LOC100281136 uncharacterized LOC100281136
100281366 M, C LOC100281366 violaxanthin de-epoxidase
100281391 C, C LOC100281391 uncharacterized LOC100281391
100281663 M, C LOC100281663 carotenoid isomerase 2
100281693 M, C LOC100281693 beta-carotene hydroxylase
100281747 M, C LOC100281747 carotenoid isomerase
100282128 O, Y LOC100282128 uncharacterized LOC100282128
100285076 O, Y LOC100285076 zeaxanthin epoxidase
100383002 M, C LOC100383002 pink scutellum 1
100383693 S, C LOC100383693 putative cytochrome P450 superfamily protein
100384384 O, C LOC100384384 uncharacterized LOC100384384
100501444 M, Y LOC100501444 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic-like
100501454 C, C LOC100501454 nine-cis-epoxycarotenoid dioxygenase6
100502521 C, C LOC100502521 uncharacterized LOC100502521
100502522 C, C LOC100502522 uncharacterized LOC100502522
103626043 C, C LOC103626043 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic-like
103627610 M, C LOC103627610 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
103627895 C, C LOC103627895 protein LUTEIN DEFICIENT 5, chloroplastic
103631225 M, C LOC103631225 beta-carotene 3-hydroxylase, chloroplastic
103631977 C, C LOC103631977 indole-3-acetaldehyde oxidase-like
103634160 O, Y LOC103634160 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like
103634451 C, C LOC103634451 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic
103637620 C, C LOC103637620 carotene epsilon-monooxygenase, chloroplastic
103641704 C, C_M LOC103641704 zeaxanthin epoxidase, chloroplastic
103647484 S, C LOC103647484 abscisic acid 8'-hydroxylase 3
103648116 C, C LOC103648116 beta-carotene isomerase D27, chloroplastic
103648268 C, C LOC103648268 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic
103652265 C, C LOC103652265 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic
103653298 S, C LOC103653298 abscisic acid 8'-hydroxylase 3-like
109940986 M, C LOC109940986 phytoene synthase 3, chloroplastic-like


List of genes in bra


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
103827806 S, C LOC103827806 abscisic acid 8'-hydroxylase 3
103828685 M, C LOC103828685 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
103829545 O, C LOC103829545 zeaxanthin epoxidase, chloroplastic
103832319 O, N LOC103832319 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic
103832798 O, C LOC103832798 xanthoxin dehydrogenase
103833794 C, C LOC103833794 protein LUTEIN DEFICIENT 5, chloroplastic
103834110 C, C LOC103834110 probable carotenoid cleavage dioxygenase 4, chloroplastic
103835193 C, C LOC103835193 15-cis-phytoene desaturase, chloroplastic/chromoplastic
103837729 C, C LOC103837729 zeaxanthin epoxidase, chloroplastic
103839129 S, C LOC103839129 abscisic acid 8'-hydroxylase 3
103840429 C, C LOC103840429 probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
103842019 C, C LOC103842019 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
103843494 C, C LOC103843494 prolycopene isomerase, chloroplastic
103843711 M, C LOC103843711 beta-carotene isomerase D27, chloroplastic
103844746 C, C LOC103844746 beta-carotene 3-hydroxylase 2, chloroplastic
103845139 C, C LOC103845139 lycopene epsilon cyclase, chloroplastic
103846262 C, C LOC103846262 phytoene synthase, chloroplastic
103849152 C, C LOC103849152 zeta-carotene desaturase, chloroplastic/chromoplastic
103849374 S, C LOC103849374 abscisic acid 8'-hydroxylase 2
103850280 C, C LOC103850280 carotene epsilon-monooxygenase, chloroplastic
103850421 C, C LOC103850421 carotenoid cleavage dioxygenase 8, chloroplastic
103851090 C, C LOC103851090 phytoene synthase, chloroplastic
103853125 C, C LOC103853125 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic
103853629 S, C LOC103853629 abscisic acid 8'-hydroxylase 3
103856237 C, C LOC103856237 phytoene synthase, chloroplastic
103856252 O, C LOC103856252 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic
103856778 C, C LOC103856778 lycopene epsilon cyclase, chloroplastic
103857159 C, C LOC103857159 probable carotenoid cleavage dioxygenase 4, chloroplastic
103857276 S, C LOC103857276 abscisic acid 8'-hydroxylase 1
103859576 C, C LOC103859576 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
103859803 S, C LOC103859803 abscisic acid 8'-hydroxylase 4
103860984 O, C LOC103860984 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic
103861043 M, C LOC103861043 abscisic acid 8'-hydroxylase 1
103861586 C, C BCH beta-carotene 3-hydroxylase 1, chloroplastic
103863442 C, C LOC103863442 beta-carotene 3-hydroxylase 1, chloroplastic
103863556 C, C PDS 15-cis-phytoene desaturase, chloroplastic/chromoplastic
103864755 O, Y LOC103864755 abscisic-aldehyde oxidase
103866186 C, C LOC103866186 carotenoid cleavage dioxygenase 7, chloroplastic
103868505 S, V LOC103868505 beta-D-glucopyranosyl abscisate beta-glucosidase
103869474 S, C LOC103869474 abscisic acid 8'-hydroxylase 4
103870025 C, M LOC103870025 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
103870482 O, Y LOC103870482 lycopene beta cyclase, chloroplastic
103871211 S, V LOC103871211 beta-D-glucopyranosyl abscisate beta-glucosidase
103871215 O, Y LOC103871215 xanthoxin dehydrogenase
103871599 S, C LOC103871599 violaxanthin de-epoxidase, chloroplastic
103871859 C, C LOC103871859 15-cis-zeta-carotene isomerase, chloroplastic
117126611 O, C LOC117126611 zeaxanthin epoxidase, chloroplastic


List of genes in vvi


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
100232875 C, M BCH1 beta-carotene hydroxylase
100232942 C, C NCED1 9-cis-epoxycarotenoid dioxygenase 1
100232943 C, C NCED2 9-cis-epoxycarotenoid dioxygenase 2
100232944 O, C ZEP zeaxanthin epoxidase
100240685 M, C PDS1 phytoene desaturase
100240996 C, C LOC100240996 protein LUTEIN DEFICIENT 5, chloroplastic
100242750 C, C LOC100242750 carotenoid cleavage dioxygenase 7, chloroplastic
100243621 C, C LOC100243621 carotene epsilon-monooxygenase, chloroplastic
100244362 C, C LOC100244362 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
100245154 C, C LOC100245154 zeta-carotene desaturase, chloroplastic/chromoplastic
100245540 S, C LOC100245540 abscisic acid 8'-hydroxylase 4
100246195 O, N LOC100246195 phytoene synthase 2, chloroplastic
100246737 C, C LOC100246737 capsanthin/capsorubin synthase, chromoplast
100246968 O, C LOC100246968 abscisic acid 8'-hydroxylase 4
100248565 O, Y LOC100248565 abscisate beta-glucosyltransferase-like
100250765 C, C LOC100250765 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
100251100 C, C LOC100251100 probable carotenoid cleavage dioxygenase 4, chloroplastic
100252133 O, C LOC100252133 lycopene beta cyclase, chloroplastic
100252385 C, C LOC100252385 phytoene synthase 2, chloroplastic
100252859 C, C LOC100252859 probable carotenoid cleavage dioxygenase 4, chloroplastic
100254497 C, C LOC100254497 probable carotenoid cleavage dioxygenase 4, chloroplastic
100257861 S, C HYD3 abscisic acid 8'-hydroxylase 3-like
100257865 C, Y LOC100257865 violaxanthin de-epoxidase, chloroplastic
100257960 O, C LOC100257960 zeaxanthin epoxidase, chloroplastic
100258367 C, C LOC100258367 15-cis-zeta-carotene isomerase, chloroplastic
100259482 C, C LECY1 lycopene epsilon cyclase, chloroplastic-like
100260462 S, C LOC100260462 abscisic acid 8'-hydroxylase 2
100262162 S, C LOC100262162 phytoene synthase 2, chloroplastic
100263250 O, C LOC100263250 prolycopene isomerase, chloroplastic
100264783 S, C HYD2 hypodontia, autosomal recessive (2)
100265098 O, N LOC100265098 abscisic-aldehyde oxidase
100265470 O, Y LOC100265470 xanthoxin dehydrogenase
100267042 O, N LOC100267042 abscisic-aldehyde oxidase
100268009 C, M LOC100268009 beta-carotene hydroxylase 2, chloroplastic
100853223 S, C LOC100853223 beta-carotene isomerase D27, chloroplastic


List of genes in ppo


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
7457533 M, C LOC7457533 abscisic acid 8'-hydroxylase 4
7457714 C, C LOC7457714 phytoene synthase 2, chloroplastic
7458943 O, C LOC7458943 lycopene beta cyclase, chloroplastic/chromoplastic
7460121 O, N LOC7460121 zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic
7461370 C, C LOC7461370 phytoene synthase 2, chloroplastic
7462030 C, C LOC7462030 15-cis-phytoene desaturase, chloroplastic/chromoplastic
7462440 O, Y LOC7462440 15-cis-phytoene desaturase, chloroplastic/chromoplastic
7462609 C, C LOC7462609 zeaxanthin epoxidase, chloroplastic
7462884 S, C LOC7462884 abscisic acid 8'-hydroxylase 4
7462922 C, Y LOC7462922 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
7464659 C, C LOC7464659 phytoene synthase 2, chloroplastic
7465099 S, C LOC7465099 abscisic acid 8'-hydroxylase 2
7466321 C, C LOC7466321 15-cis-zeta-carotene isomerase, chloroplastic
7468341 C, C LOC7468341 beta-carotene hydroxylase 2, chloroplastic
7468629 S, C LOC7468629 abscisic acid 8'-hydroxylase 2
7470743 C, C LOC7470743 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
7472358 C, C LOC7472358 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
7473341 C, C LOC7473341 zeta-carotene desaturase, chloroplastic/chromoplastic
7474648 C, C LOC7474648 violaxanthin de-epoxidase, chloroplastic
7477718 C, C LOC7477718 protein LUTEIN DEFICIENT 5, chloroplastic
7478577 C, C LOC7478577 capsanthin/capsorubin synthase, chromoplastic
7478602 O, Y LOC7478602 indole-3-acetaldehyde oxidase
7478609 C, C LOC7478609 zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic
7479294 C, C LOC7479294 beta-carotene hydroxylase 2, chloroplastic
7479491 C, C LOC7479491 prolycopene isomerase, chloroplastic
7480715 C, C LOC7480715 phytoene synthase 2, chloroplastic
7487015 O, Y LOC7487015 xanthoxin dehydrogenase
7488070 C, C LOC7488070 prolycopene isomerase, chloroplastic
7489733 C, C LOC7489733 zeaxanthin epoxidase, chloroplastic
7493195 C, C LOC7493195 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
7494613 C, C LOC7494613 probable carotenoid cleavage dioxygenase 4, chloroplastic
7496096 O, Y LOC7496096 lycopene beta cyclase, chloroplastic/chromoplastic
7497045 C, M LOC7497045 probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
18094985 M, C LOC18094985 zeaxanthin epoxidase, chloroplastic
18095516 C, C LOC18095516 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
18096146 M, C LOC18096146 beta-carotene isomerase D27, chloroplastic
18097235 C, C LOC18097235 phytoene synthase 2, chloroplastic
18097786 S, C LOC18097786 abscisic acid 8'-hydroxylase 4
18098019 O, N LOC18098019 abscisic-aldehyde oxidase
18098070 C, C LOC18098070 capsanthin/capsorubin synthase, chromoplastic
18098425 S, C LOC18098425 abscisic acid 8'-hydroxylase 1
18098943 C, C LOC18098943 zeta-carotene desaturase, chloroplastic/chromoplastic
18100110 C, C LOC18100110 carotene epsilon-monooxygenase, chloroplastic
18100367 C, C LOC18100367 lycopene epsilon cyclase, chloroplastic
18102197 C, C LOC18102197 zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic
18102202 O, Y LOC18102202 indole-3-acetaldehyde oxidase
18103239 C, M LOC18103239 probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
18104892 S, C LOC18104892 abscisic acid 8'-hydroxylase 4
18105151 C, C LOC18105151 carotenoid cleavage dioxygenase 7, chloroplastic
18106473 C, C LOC18106473 beta-carotene hydroxylase 2, chloroplastic
18106554 O, C LOC18106554 phytoene synthase 2, chloroplastic
112325979 O, Y LOC112325979 lycopene beta cyclase, chloroplastic/chromoplastic
112327632 C, C LOC112327632 probable carotenoid cleavage dioxygenase 4, chloroplastic
112327644 M, C LOC112327644 beta-carotene isomerase D27, chloroplastic-like


List of genes in mtr


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
11408134 C, C LOC11408134 capsanthin/capsorubin synthase, chromoplastic
11408584 C, C LOC11408584 zeaxanthin epoxidase, chloroplastic
11409428 C, C LOC11409428 probable carotenoid cleavage dioxygenase 4, chloroplastic
11409691 C, C LOC11409691 protein LUTEIN DEFICIENT 5, chloroplastic
11413490 C, C LOC11413490 probable carotenoid cleavage dioxygenase 4, chloroplastic
11414529 S, C LOC11414529 abscisic acid 8'-hydroxylase CYP707A1
11414690 O, Y LOC11414690 xanthoxin dehydrogenase
11415565 S, C LOC11415565 abscisic acid 8'-hydroxylase CYP707A2
11415648 C, C LOC11415648 zeta-carotene desaturase, chloroplastic/chromoplastic
11416550 O, C LOC11416550 probable carotenoid cleavage dioxygenase 4, chloroplastic
11417046 C, C LOC11417046 neoxanthin synthase, chloroplastic
11419142 O, C LOC11419142 lycopene beta cyclase, chloroplastic/chromoplastic
11419279 O, C LOC11419279 zeaxanthin epoxidase, chloroplastic
11421788 C, C LOC11421788 phytoene synthase 2, chloroplastic
11423389 C, Y LOC11423389 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
11424160 C, C LOC11424160 beta-carotene hydroxylase 2, chloroplastic
11426744 C, C LOC11426744 phytoene synthase 2, chloroplastic
11429551 C, C LOC11429551 carotene epsilon-monooxygenase, chloroplastic
11429816 O, C LOC11429816 violaxanthin de-epoxidase, chloroplastic
11430619 O, N LOC11430619 abscisic-aldehyde oxidase-like
11431387 O, N LOC11431387 indole-3-acetaldehyde oxidase
11436315 C, C LOC11436315 15-cis-zeta-carotene isomerase, chloroplastic
11437285 C, C LOC11437285 phytoene synthase 2, chloroplastic
11437558 C, C LOC11437558 15-cis-zeta-carotene isomerase, chloroplastic
11438775 C, C LOC11438775 lycopene epsilon cyclase, chloroplastic
11438975 C, C LOC11438975 carotenoid cleavage dioxygenase 7, chloroplastic
11440521 S, S LOC11440521 abscisic acid 8'-hydroxylase CYP707A2
11444685 S, C LOC11444685 abscisic acid 8'-hydroxylase 4
11445728 S, C LOC11445728 abscisic acid 8'-hydroxylase 4
25482830 S, C LOC25482830 abscisic acid 8'-hydroxylase 2
25483622 C, C LOC25483622 prolycopene isomerase, chloroplastic
25485781 O, C LOC25485781 beta-carotene isomerase D27, chloroplastic-like
25487063 C, C LOC25487063 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
25490580 M, C LOC25490580 phytoene synthase 2, chloroplastic
25496443 M, C LOC25496443 beta-carotene hydroxylase 2, chloroplastic
25498599 O, Y LOC25498599 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
25499185 M, C LOC25499185 beta-carotene isomerase D27, chloroplastic-like
112421126 O, Y LOC112421126 abscisate beta-glucosyltransferase-like
120577445 C, C LOC120577445 zeaxanthin epoxidase, chloroplastic-like
120577706 C, C LOC120577706 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like


List of genes in tae


Shaded genes do not have coexpression data.
For search Locus* Target* Alias Function*
542859 C, C LOC542859 violaxanthin de-epoxidase, chloroplastic
542878 O, E LOC542878 zeaxanthin epoxidase, chloroplastic
100037655 C, C LOC100037655 15-cis-phytoene desaturase, chloroplastic/chromoplastic
100270658 M, C LOC100270658 zeta-carotene desaturase, chloroplastic/chromoplastic
100415846 C, C LOC100415846 beta-carotene 3-hydroxylase, chloroplastic
100682449 S, C LOC100682449 abscisic acid 8'-hydroxylase 3
101290666 C, C LOC101290666 lycopene beta cyclase, chloroplastic
123041264 C, C LOC123041264 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like
123044758 C, C LOC123044758 zeta-carotene desaturase, chloroplastic/chromoplastic-like
123045021 O, C LOC123045021 indole-3-acetaldehyde oxidase-like
123045605 O, C LOC123045605 zeaxanthin epoxidase, chloroplastic-like
123046235 C, C LOC123046235 beta-carotene 3-hydroxylase, chloroplastic-like
123046402 C, C LOC123046402 carotenoid cleavage dioxygenase 7, chloroplastic-like
123048173 C, M LOC123048173 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
123051536 C, C LOC123051536 carotene epsilon-monooxygenase, chloroplastic-like
123052650 M, C LOC123052650 zeta-carotene desaturase, chloroplastic/chromoplastic
123052812 O, C LOC123052812 indole-3-acetaldehyde oxidase-like
123053120 C, C LOC123053120 violaxanthin de-epoxidase, chloroplastic-like
123053443 O, C LOC123053443 zeaxanthin epoxidase, chloroplastic-like
123054106 C, C LOC123054106 beta-carotene 3-hydroxylase, chloroplastic-like
123054247 C, C LOC123054247 carotenoid cleavage dioxygenase 7, chloroplastic-like
123055773 C, C LOC123055773 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like
123056732 C, C LOC123056732 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like
123058519 C, C LOC123058519 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic
123065607 C, C LOC123065607 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like
123067325 C, C LOC123067325 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like
123069994 C, C LOC123069994 lycopene epsilon cyclase, chloroplastic
123074700 C, C LOC123074700 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like
123084692 C, C LOC123084692 15-cis-phytoene desaturase, chloroplastic/chromoplastic-like
123089378 M, C LOC123089378 beta-carotene 3-hydroxylase, chloroplastic-like
123098691 C, C LOC123098691 15-cis-phytoene desaturase, chloroplastic/chromoplastic
123102037 M, C LOC123102037 phytoene synthase 2, chloroplastic-like
123102131 C, C LOC123102131 15-cis-zeta-carotene isomerase, chloroplastic-like
123103964 S, C LOC123103964 abscisic acid 8'-hydroxylase 3-like
123104764 C, C LOC123104764 phytoene synthase 2, chloroplastic-like
123104904 C, C LOC123104904 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
123105588 C, C LOC123105588 zerumbone synthase-like
123108286 M, C LOC123108286 beta-carotene 3-hydroxylase, chloroplastic-like
123109998 M, C LOC123109998 prolycopene isomerase, chloroplastic-like
123110153 M, C LOC123110153 phytoene synthase 2, chloroplastic-like
123110233 C, C LOC123110233 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
123110269 C, C LOC123110269 15-cis-zeta-carotene isomerase, chloroplastic-like
123112199 S, C LOC123112199 abscisic acid 8'-hydroxylase 3-like
123113055 M, C LOC123113055 phytoene synthase 2, chloroplastic-like
123113194 C, C LOC123113194 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
123113898 C, C LOC123113898 zerumbone synthase-like
123119179 M, C LOC123119179 phytoene synthase 2, chloroplastic-like
123119285 C, C LOC123119285 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
123119310 C, C LOC123119310 15-cis-zeta-carotene isomerase, chloroplastic-like
123122573 M, C LOC123122573 phytoene synthase 2, chloroplastic-like
123122716 C, C LOC123122716 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
123123404 C, C LOC123123404 zerumbone synthase-like
123127204 C, C LOC123127204 lycopene beta cyclase, chloroplastic-like
123127494 C, C LOC123127494 carotene epsilon-monooxygenase, chloroplastic-like
123128115 S, C LOC123128115 abscisic acid 8'-hydroxylase 1-like
123128116 C, Y LOC123128116 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
123128994 C, C LOC123128994 protein LUTEIN DEFICIENT 5, chloroplastic-like
123133128 C, C LOC123133128 carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like
123136803 C, C LOC123136803 lycopene beta cyclase, chloroplastic-like
123137905 S, C LOC123137905 abscisic acid 8'-hydroxylase 1-like
123137906 C, Y LOC123137906 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
123139250 O, Y LOC123139250 phytoene synthase 2, chloroplastic-like
123139251 O, Y LOC123139251 uncharacterized LOC123139251
123139872 C, C LOC123139872 protein LUTEIN DEFICIENT 5, chloroplastic-like
123145207 S, C LOC123145207 abscisic acid 8'-hydroxylase 1
123145208 C, Y LOC123145208 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
123146173 C, C LOC123146173 protein LUTEIN DEFICIENT 5, chloroplastic-like
123146215 M, C LOC123146215 uncharacterized LOC123146215
123148636 C, C LOC123148636 beta-carotene isomerase D27, chloroplastic-like
123149475 M, N LOC123149475 putative aldehyde oxidase-like protein
123149840 O, C LOC123149840 phytoene synthase 1, chloroplastic-like
123156221 C, C LOC123156221 phytoene synthase 1, chloroplastic-like
123157236 C, C LOC123157236 beta-carotene isomerase D27, chloroplastic-like
123159401 M, C LOC123159401 putative aldehyde oxidase-like protein
123160002 M, C LOC123160002 putative aldehyde oxidase-like protein
123164721 C, C LOC123164721 beta-carotene isomerase D27, chloroplastic-like
123165432 C, C LOC123165432 phytoene synthase 1, chloroplastic-like
123166649 O, C LOC123166649 putative aldehyde oxidase-like protein
123166651 M, C LOC123166651 putative aldehyde oxidase-like protein
123180287 M, C LOC123180287 prolycopene isomerase, chloroplastic-like
123181586 C, C LOC123181586 carotene epsilon-monooxygenase, chloroplastic-like
123188694 O, C LOC123188694 indole-3-acetaldehyde oxidase-like
123189027 C, C LOC123189027 violaxanthin de-epoxidase, chloroplastic-like
123189717 M, C LOC123189717 prolycopene isomerase, chloroplastic-like
123189994 C, C LOC123189994 beta-carotene 3-hydroxylase, chloroplastic-like
123190133 C, C LOC123190133 carotenoid cleavage dioxygenase 7, chloroplastic-like
123191449 C, C LOC123191449 carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like


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