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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125610300   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 bna-r.1   106360920   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 bna-r.1   106377068   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 bna-r.1   106422225   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 bra-r.6   103857159   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 bra-r.6   103834110   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ath-u.5   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ghi-r.1   107947364   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ghi-r.1   107946820   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 cit-r.1   102612995   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 gma-u.5   100777875   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 vvi-u.5   100252859   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 vvi-u.5   100251100   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ppo-u.5   7494613   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ppo-u.5   112327632   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11416550   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11413490   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11409428   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sly-u.5   101250828   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sly-u.5   101250535   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sot-r.1   102581808   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 nta-r.1   107767418   putative carotenoid cleavage dioxygenase 4, chloroplastic 
 nta-r.1   107823578   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 nta-r.1   107791323   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 osa-u.5   4330451   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 
 osa-u.5   4352125   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 
 zma-u.5   103627610   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 zma-u.5   100501454   nine-cis-epoxycarotenoid dioxygenase6 
 tae-r.2   123128116   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 tae-r.2   123137906   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 tae-r.2   123145208   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 hvu-r.1   123401792   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 
 sbi-r.1   110434687   zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like 
 bdi-r.1   100845393   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 

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Top 50 coexpressed genes to 125610300 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125610300 (bna-r.1 coexpression data)

CoexMap"125610300"


bnaLOC125610300 | Entrez gene ID : 125610300    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 1 2 2 3 2 1 3 2 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00906 [list] [network] Carotenoid biosynthesis (106 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (34 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (365 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (34 genes)  IEA  
Protein XP_048638594.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  cyto_mito 1  (predict for XP_048638594.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_048638594.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125610300
bna-r.1
for
106360920
bna-r.1
for
106377068
bna-r.1
for
106422225
bra-r.6
for
103857159
bra-r.6
for
103834110
ath-u.5
for
NCED4
ghi-r.1
for
107947364
ghi-r.1
for
107946820
cit-r.1
for
102612995
gma-u.5
for
100777875
vvi-u.5
for
100252859
vvi-u.5
for
100251100
ppo-u.5
for
7494613
ppo-u.5
for
112327632
mtr-u.5
for
11416550
mtr-u.5
for
11413490
mtr-u.5
for
11409428
sly-u.5
for
101250828
sly-u.5
for
101250535
sot-r.1
for
102581808
nta-r.1
for
107767418
nta-r.1
for
107823578
nta-r.1
for
107791323
osa-u.5
for
4330451
osa-u.5
for
4352125
zma-u.5
for
103627610
zma-u.5
for
100501454
tae-r.2
for
123128116
tae-r.2
for
123137906
tae-r.2
for
123145208
hvu-r.1
for
123401792
sbi-r.1
for
110434687
bdi-r.1
for
100845393


Ortholog ID: 6042
Species bna bna bna bra bra ath ghi ghi cit gma vvi vvi ppo ppo mtr mtr mtr sly sly sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi
Symbol LOC125610300 LOC106360920 LOC106377068 LOC103857159 LOC103834110 NCED4 LOC107947364 LOC107946820 LOC102612995 LOC100777875 LOC100252859 LOC100251100 LOC7494613 LOC112327632 LOC11416550 LOC11413490 LOC11409428 LOC101250828 LOC101250535 LOC102581808 LOC107767418 LOC107823578 LOC107791323 LOC4330451 LOC4352125 LOC103627610 LOC100501454 LOC123128116 LOC123137906 LOC123145208 LOC123401792 LOC110434687 LOC100845393
Function* probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic nine-cis-epoxycarotenoid dioxygenase 4 probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic putative carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic nine-cis-epoxycarotenoid dioxygenase6 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00630 Glyoxylate and dicarboxylate metabolism 3
ppo01200 Carbon metabolism 3
ppo00195 Photosynthesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 4
mtr00906 Carotenoid biosynthesis 3
mtr04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 4
tae00906 Carotenoid biosynthesis 3
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00908 Zeatin biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125610300 106360920 106377068 103857159 103834110 827655 107947364 107946820 102612995 100777875 100252859 100251100 7494613 112327632 11416550 11413490 11409428 101250828 101250535 102581808 107767418 107823578 107791323 4330451 4352125 103627610 100501454 123128116 123137906 123145208 123401792 110434687 100845393
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