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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11409691   protein LUTEIN DEFICIENT 5, chloroplastic 
 mtr-r.5   11409691   protein LUTEIN DEFICIENT 5, chloroplastic 
 mtr-m.5   11409691   protein LUTEIN DEFICIENT 5, chloroplastic 
 gma-u.5   100791400   protein LUTEIN DEFICIENT 5, chloroplastic 
 gma-u.5   CYP97C10   protein LUTEIN DEFICIENT 5, chloroplastic 
 ppo-u.5   7477718   protein LUTEIN DEFICIENT 5, chloroplastic 
 ath-u.5   CYP97A3   cytochrome P450, family 97, subfamily A, polypeptide 3 
 vvi-u.5   100240996   protein LUTEIN DEFICIENT 5, chloroplastic 
 sly-u.5   CYP97A29   cytochrome P450-type monooxygenase 97A29 
 osa-u.5   4331152   protein LUTEIN DEFICIENT 5, chloroplastic 
 zma-u.5   103627895   protein LUTEIN DEFICIENT 5, chloroplastic 

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Top 50 coexpressed genes to 11409691 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11409691 (mtr-u.5 coexpression data)

CoexMap"11409691"


mtrLOC11409691 | Entrez gene ID : 11409691      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00906 [list] [network] Carotenoid biosynthesis (45 genes)
GO BP
GO:0016123 [list] [network] xanthophyll biosynthetic process  (6 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (642 genes)  IEA  
GO MF
GO:0010291 [list] [network] beta-carotene 3-hydroxylase activity  (3 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (450 genes)  IEA  
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (468 genes)  IEA  
GO:0020037 [list] [network] heme binding  (538 genes)  IEA  
Protein XP_003624118.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_003624118.3)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003624118.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11409691

.
mtr-r.5
for
11409691

.
mtr-m.5
for
11409691

.
gma-u.5
for
100791400

.
gma-u.5
for
CYP97C10

.
ppo-u.5
for
7477718

.
ath-u.5
for
CYP97A3

.
vvi-u.5
for
100240996

.
sly-u.5
for
CYP97A29

.
osa-u.5
for
4331152

.
zma-u.5
for
103627895

.


Ortholog ID: 9243
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol CYP97A3 LOC100791400 CYP97C10 CYP97A29 LOC4331152 LOC103627895 LOC103833794 LOC100240996 LOC7477718 LOC11409691 LOC123139872 LOC123128994 LOC123405873 LOC123403226 LOC107919219 LOC107912958 LOC106401087 LOC106414823 CHLRE_16g678437v5 CHLRE_02g142266v5 LOC8055312 LOC102591173 LOC102620327 LOC100834203 LOC107820237 LOC107775451
Function* cytochrome P450, family 97, subfamily A, polypeptide 3 protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic cytochrome P450-type monooxygenase 97A29 protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic-like protein LUTEIN DEFICIENT 5, chloroplastic-like protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic uncharacterized protein uncharacterized protein protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00260 Glycine, serine and threonine metabolism 3
ath01200 Carbon metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00500 Starch and sucrose metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
sly03010 Ribosome 2
sly00906 Carotenoid biosynthesis 2
sly00561 Glycerolipid metabolism 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00906 Carotenoid biosynthesis 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 2
bra00230 Purine metabolism 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 7
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae04075 Plant hormone signal transduction 2
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 6
cre00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 4
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840067 100791400 100780770 100322875 4331152 103627895 103833794 100240996 7477718 11409691 123139872 123128994 123405873 123403226 107919219 107912958 106401087 106414823 5724445 5726062 8055312 102591173 102620327 100834203 107820237 107775451
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