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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   CrtR-b2   beta-carotene hydroxylase 
 sly-r.6   CrtR-b2   beta-carotene hydroxylase 
 sly-m.5   CrtR-b2   beta-carotene hydroxylase 
 sly-u.5   CrtR-b1   beta-carotene hydroxylase 
 ath-u.5   BETA-OHASE 1   beta-hydroxylase 1 
 ath-u.5   BETA-OHASE 2   beta-carotene hydroxylase 2 
 gma-u.5   BCH3   beta-carotene hydroxylase BCH3 
 gma-u.5   BCH2   beta-carotene hydroxylase BCH2 
 gma-u.5   BCH4   beta-carotene hydroxylase 4 
 vvi-u.5   BCH1   beta-carotene hydroxylase 
 vvi-u.5   100268009   beta-carotene hydroxylase 2, chloroplastic 
 ppo-u.5   18106473   beta-carotene hydroxylase 2, chloroplastic 
 ppo-u.5   7468341   beta-carotene hydroxylase 2, chloroplastic 
 mtr-u.5   25496443   beta-carotene hydroxylase 2, chloroplastic 
 mtr-u.5   11424160   beta-carotene hydroxylase 2, chloroplastic 
 osa-u.5   4349224   beta-carotene hydroxylase 2, chloroplastic 
 osa-u.5   4331460   beta-carotene hydroxylase 2, chloroplastic 
 zma-u.5   103631225   beta-carotene 3-hydroxylase, chloroplastic 
 zma-u.5   732825   beta-carotene hydroxylase 
 zma-u.5   732775   beta-carotene hydroxylase 

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Top 50 coexpressed genes to CrtR-b2 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CrtR-b2 (sly-u.5 coexpression data)

CoexMap"544297"


slyCrtR-b2 | Entrez gene ID : 544297      
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 2 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00906 [list] [network] Carotenoid biosynthesis (39 genes)
GO BP
GO:0016123 [list] [network] xanthophyll biosynthetic process  (4 genes)  IEA  
GO:0016119 [list] [network] carotene metabolic process  (17 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO MF
GO:0010291 [list] [network] beta-carotene 3-hydroxylase activity  (3 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (371 genes)  IEA  
Protein NP_001265981.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 4,  cyto 1,  plas 1,  golg 1,  golg_plas 1,  cyto_plas 1  (predict for NP_001265981.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001265981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
CrtR-b2
sly-r.6
for
CrtR-b2
sly-m.5
for
CrtR-b2
sly-u.5
for
CrtR-b1
ath-u.5
for
BETA-OHASE 1
ath-u.5
for
BETA-OHASE 2
gma-u.5
for
BCH3
gma-u.5
for
BCH2
gma-u.5
for
BCH4
vvi-u.5
for
BCH1
vvi-u.5
for
100268009
ppo-u.5
for
18106473
ppo-u.5
for
7468341
mtr-u.5
for
25496443
mtr-u.5
for
11424160
osa-u.5
for
4349224
osa-u.5
for
4331460
zma-u.5
for
103631225
zma-u.5
for
732825
zma-u.5
for
732775


Ortholog ID: 2749
Species sly sly sot sot nta nta ath ath gma gma bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna cit osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol CrtR-b2 CrtR-b1 LOC102580250 LOC102582135 LOC107789701 LOC107824034 BETA-OHASE 1 BETA-OHASE 2 BCH5 BCH2 BCH BCH1 LOC100268009 LOC7468341 LOC18106473 LOC25496443 LOC11424160 LOC121211198 LOC107890752 LOC106406976 LOC106442837 LOC102578021 LOC4349224 LOC732775 LOC103631225 LOC123054106 LOC123046235 LOC123430624 LOC123449828 LOC8060428 LOC8085716 LOC100837035 LOC100836591 CHLRE_04g215050v5
Function* beta-carotene hydroxylase beta-carotene hydroxylase beta-carotene hydroxylase 1, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic-like beta-hydroxylase 1 beta-carotene hydroxylase 2 beta-carotene hydroxylase 5 beta-carotene hydroxylase BCH2 beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene hydroxylase beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic-like beta-carotene hydroxylase beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic-like beta-carotene 3-hydroxylase, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04075 Plant hormone signal transduction 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 11
nta04016 MAPK signaling pathway - plant 9
nta00906 Carotenoid biosynthesis 2
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 9
nta04016 MAPK signaling pathway - plant 7
nta00906 Carotenoid biosynthesis 2
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00350 Tyrosine metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00360 Phenylalanine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00900 Terpenoid backbone biosynthesis 4
gma00860 Porphyrin metabolism 3
gma00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04016 MAPK signaling pathway - plant 4
ppo00906 Carotenoid biosynthesis 3
ppo00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 3
ghi04981 Folate transport and metabolism 3
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
ghi00051 Fructose and mannose metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00196 Photosynthesis - antenna proteins 4
osa00906 Carotenoid biosynthesis 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 4
zma01240 Biosynthesis of cofactors 4
zma00051 Fructose and mannose metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 7
zma04016 MAPK signaling pathway - plant 6
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae00310 Lysine degradation 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae01240 Biosynthesis of cofactors 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 544297 544133 102580250 102582135 107789701 107824034 828675 835334 100813368 100785541 103861586 100232875 100268009 7468341 18106473 25496443 11424160 121211198 107890752 106406976 106442837 102578021 4349224 732775 103631225 123054106 123046235 123430624 123449828 8060428 8085716 100837035 100836591 5724272
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