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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ZDS   zeta-carotene desaturase 
 ath-r.7   ZDS   zeta-carotene desaturase 
 ath-m.9   ZDS   zeta-carotene desaturase 
 ath-e.2   ZDS   zeta-carotene desaturase 
 ath-m.4.bio   ZDS   zeta-carotene desaturase 
 ath-m.4.hor   ZDS   zeta-carotene desaturase 
 ath-m.4.lig   ZDS   zeta-carotene desaturase 
 ath-m.4.str   ZDS   zeta-carotene desaturase 
 ath-m.4.tis   ZDS   zeta-carotene desaturase 
 bra-r.6   103849152   zeta-carotene desaturase, chloroplastic/chromoplastic 
 bna-r.1   106427407   zeta-carotene desaturase, chloroplastic/chromoplastic 
 bna-r.1   106453079   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ghi-r.1   107888796   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ghi-r.1   107945977   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ghi-r.1   107920020   zeta-carotene desaturase, chloroplastic/chromoplastic 
 cit-r.1   102577969   ZDS 
 gma-u.5   100816122   zeta-carotene desaturase, chloroplastic/chromoplastic 
 gma-u.5   100776502   zeta-carotene desaturase, chloroplastic/chromoplastic 
 vvi-u.5   100245154   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ppo-u.5   18098943   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ppo-u.5   7473341   zeta-carotene desaturase, chloroplastic/chromoplastic 
 mtr-u.5   11415648   zeta-carotene desaturase, chloroplastic/chromoplastic 
 sly-u.5   zds   zeta-carotene desaturase 
 sot-r.1   102598493   zeta-carotene desaturase, chloroplastic/chromoplastic 
 nta-r.1   107830915   zeta-carotene desaturase, chloroplastic/chromoplastic 
 nta-r.1   107772271   zeta-carotene desaturase, chloroplastic/chromoplastic-like 
 osa-u.5   4342680   zeta-carotene desaturase, chloroplastic/chromoplastic 
 zma-u.5   542604   zeta carotene desaturase candidate 
 tae-r.2   123044758   zeta-carotene desaturase, chloroplastic/chromoplastic 
 tae-r.2   100270658   zeta-carotene desaturase, chloroplastic/chromoplastic 
 tae-r.2   123052650   zeta-carotene desaturase, chloroplastic/chromoplastic 
 hvu-r.1   123425989   zeta-carotene desaturase, chloroplastic/chromoplastic 
 sbi-r.1   8078415   zeta-carotene desaturase, chloroplastic/chromoplastic 
 bdi-r.1   100836583   zeta-carotene desaturase, chloroplastic/chromoplastic 
 cre-r.1   CHLRE_07g314150v5   uncharacterized protein 

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Top 50 coexpressed genes to ZDS (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ZDS (ath-u.5 coexpression data)

CoexMap"819647"


athZDS | Entrez gene ID : 819647      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00906 [list] [network] Carotenoid biosynthesis (32 genes)
GO BP
GO:0052889 [list] [network] 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene  (1 genes)  IDA  
GO:1901177 [list] [network] lycopene biosynthetic process  (1 genes)  IDA  
GO:0016120 [list] [network] carotene biosynthetic process  (7 genes)  IDA  
GO:0016117 [list] [network] carotenoid biosynthetic process  (21 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0016719 [list] [network] 9,9'-di-cis-zeta-carotene desaturase activity  (1 genes)  IDA IEA  
Protein NP_001319473.1 [sequence] [blastp]
NP_001319474.1 [sequence] [blastp]
NP_187138.1 [sequence] [blastp]
NP_974222.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  cyto_mito 1,  plas 1,  extr 1  (predict for NP_001319473.1)
chlo 7,  mito 1,  cyto_mito 1,  plas 1,  extr 1  (predict for NP_001319474.1)
chlo 7,  mito 1,  cyto_mito 1,  plas 1,  extr 1  (predict for NP_187138.1)
chlo 7,  mito 1,  cyto_mito 1,  plas 1,  extr 1  (predict for NP_974222.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001319473.1)
chlo 5  (predict for NP_001319474.1)
chlo 5  (predict for NP_187138.1)
chlo 5  (predict for NP_974222.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ZDS
ath-r.7
for
ZDS
ath-m.9
for
ZDS
ath-e.2
for
ZDS
ath-m.4.bio
for
ZDS
ath-m.4.hor
for
ZDS
ath-m.4.lig
for
ZDS
ath-m.4.str
for
ZDS
ath-m.4.tis
for
ZDS
bra-r.6
for
103849152
bna-r.1
for
106427407
bna-r.1
for
106453079
ghi-r.1
for
107888796
ghi-r.1
for
107945977
ghi-r.1
for
107920020
cit-r.1
for
102577969
gma-u.5
for
100816122
gma-u.5
for
100776502
vvi-u.5
for
100245154
ppo-u.5
for
18098943
ppo-u.5
for
7473341
mtr-u.5
for
11415648
sly-u.5
for
zds
sot-r.1
for
102598493
nta-r.1
for
107830915
nta-r.1
for
107772271
osa-u.5
for
4342680
zma-u.5
for
542604
tae-r.2
for
123044758
tae-r.2
for
100270658
tae-r.2
for
123052650
hvu-r.1
for
123425989
sbi-r.1
for
8078415
bdi-r.1
for
100836583
cre-r.1
for
CHLRE_07g314150v5


Ortholog ID: 8439
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol ZDS LOC103849152 LOC106427407 LOC106453079 LOC107888796 LOC107920020 LOC107893220 LOC102577969 LOC100816122 LOC100776502 LOC100245154 LOC18098943 LOC7473341 LOC11415648 zds LOC102598493 LOC107830915 LOC107772271 LOC4342680 LOC542604 LOC123044758 LOC100270658 LOC123052650 LOC123425989 LOC8078415 LOC100836583 CHLRE_07g314150v5
Function* zeta-carotene desaturase zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic ZDS zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic-like zeta-carotene desaturase, chloroplastic/chromoplastic zeta carotene desaturase candidate zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic zeta-carotene desaturase, chloroplastic/chromoplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 8
bna00860 Porphyrin metabolism 4
bna00010 Glycolysis / Gluconeogenesis 2
bna00053 Ascorbate and aldarate metabolism 2
bna00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 8
bna00860 Porphyrin metabolism 4
bna00010 Glycolysis / Gluconeogenesis 2
bna00053 Ascorbate and aldarate metabolism 2
bna00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
ghi03060 Protein export 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
ghi03060 Protein export 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
ghi03060 Protein export 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 5
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 6
gma03060 Protein export 2
gma03010 Ribosome 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00500 Starch and sucrose metabolism 3
vvi00460 Cyanoamino acid metabolism 2
vvi01200 Carbon metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00260 Glycine, serine and threonine metabolism 2
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 5
ppo00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 6
mtr00906 Carotenoid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 8
nta00860 Porphyrin metabolism 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 8
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00860 Porphyrin metabolism 3
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 3
osa00053 Ascorbate and aldarate metabolism 2
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 3
zma00566 Sulfoquinovose metabolism 3
zma00906 Carotenoid biosynthesis 2
zma03060 Protein export 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 6
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 6
tae03013 Nucleocytoplasmic transport 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 6
tae00260 Glycine, serine and threonine metabolism 5
tae00630 Glyoxylate and dicarboxylate metabolism 5
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 4
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 4
cre01230 Biosynthesis of amino acids 3
cre00900 Terpenoid backbone biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819647 103849152 106427407 106453079 107888796 107920020 107893220 102577969 100816122 100776502 100245154 18098943 7473341 11415648 543629 102598493 107830915 107772271 4342680 542604 123044758 100270658 123052650 123425989 8078415 100836583 5726519
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