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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100263250   prolycopene isomerase, chloroplastic 
 vvi-r.5   100263250   prolycopene isomerase, chloroplastic 
 vvi-m.5   100263250   prolycopene isomerase, chloroplastic 
 ath-u.5   CRTISO   carotenoid isomerase 
 gma-u.5   100811616   prolycopene isomerase, chloroplastic 
 gma-u.5   100798275   prolycopene isomerase, chloroplastic 
 bra-r.6   103843494   prolycopene isomerase, chloroplastic 
 ppo-u.5   7488070   prolycopene isomerase, chloroplastic 
 mtr-u.5   25483622   prolycopene isomerase, chloroplastic 
 ghi-r.1   107940426   prolycopene isomerase, chloroplastic 
 ghi-r.1   107922266   prolycopene isomerase, chloroplastic 
 bna-r.1   106420156   prolycopene isomerase, chloroplastic 
 bna-r.1   125578640   prolycopene isomerase, chloroplastic 
 cit-r.1   102577949   prolycopene isomerase, chloroplastic 
 sly-u.5   CRTISO   prolycopene isomerase, chloroplastic 
 sot-r.1   102591604   prolycopene isomerase, chloroplastic 
 nta-r.1   107791326   prolycopene isomerase, chloroplastic 
 nta-r.1   107832559   prolycopene isomerase, chloroplastic-like 
 osa-u.5   4350758   prolycopene isomerase 1, chloroplastic 
 zma-u.5   100281663   carotenoid isomerase 2 
 zma-u.5   100281747   carotenoid isomerase 
 tae-r.2   123180287   prolycopene isomerase, chloroplastic 
 tae-r.2   123109998   prolycopene isomerase, chloroplastic 
 tae-r.2   123189717   prolycopene isomerase, chloroplastic 
 hvu-r.1   123413860   prolycopene isomerase, chloroplastic 
 sbi-r.1   8071947   prolycopene isomerase, chloroplastic 
 bdi-r.1   100840652   prolycopene isomerase, chloroplastic 
 bdi-r.1   100838443   prolycopene isomerase, chloroplastic 
 cre-r.1   CHLRE_16g651923v5   uncharacterized protein 

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Top 50 coexpressed genes to 100263250 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100263250 (vvi-u.5 coexpression data)

CoexMap"100263250"


vviLOC100263250 | Entrez gene ID : 100263250    
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 1 1 2 2 1 1 1 2 1 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00906 [list] [network] Carotenoid biosynthesis (39 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (14 genes)  IEA  
GO CC
GO MF
GO:0046608 [list] [network] carotenoid isomerase activity  (1 genes)  IEA  
GO:0016491 [list] [network] oxidoreductase activity  (1452 genes)  IEA  
Protein XP_002269554.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 2,  nucl 1,  mito 1  (predict for XP_002269554.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002269554.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100263250
vvi-r.5
for
100263250
vvi-m.5
for
100263250
ath-u.5
for
CRTISO
gma-u.5
for
100811616
gma-u.5
for
100798275
bra-r.6
for
103843494
ppo-u.5
for
7488070
mtr-u.5
for
25483622
ghi-r.1
for
107940426
ghi-r.1
for
107922266
bna-r.1
for
106420156
bna-r.1
for
125578640
cit-r.1
for
102577949
sly-u.5
for
CRTISO
sot-r.1
for
102591604
nta-r.1
for
107791326
nta-r.1
for
107832559
osa-u.5
for
4350758
zma-u.5
for
100281663
zma-u.5
for
100281747
tae-r.2
for
123180287
tae-r.2
for
123109998
tae-r.2
for
123189717
hvu-r.1
for
123413860
sbi-r.1
for
8071947
bdi-r.1
for
100840652
bdi-r.1
for
100838443
cre-r.1
for
CHLRE_16g651923v5


Ortholog ID: 8680
Species vvi ath gma gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC100263250 CRTISO LOC100811616 LOC100798275 LOC103843494 LOC7488070 LOC25483622 LOC107940426 LOC107922266 LOC106420156 LOC125578640 LOC102577949 CRTISO LOC102591604 LOC107791326 LOC107832559 LOC4350758 LOC100281663 LOC100281747 LOC123180287 LOC123109998 LOC123189717 LOC123413860 LOC8071947 LOC100840652 LOC100838443 CHLRE_16g651923v5
Function* prolycopene isomerase, chloroplastic carotenoid isomerase prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic-like prolycopene isomerase 1, chloroplastic carotenoid isomerase 2 carotenoid isomerase prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
bra03020 RNA polymerase 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 9
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00062 Fatty acid elongation 2
bna01040 Biosynthesis of unsaturated fatty acids 2
bna01212 Fatty acid metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly00051 Fructose and mannose metabolism 2
sly01240 Biosynthesis of cofactors 2
sly00010 Glycolysis / Gluconeogenesis 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00900 Terpenoid backbone biosynthesis 3
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 6
nta00900 Terpenoid backbone biosynthesis 3
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00500 Starch and sucrose metabolism 2
tae00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 4
cre00860 Porphyrin metabolism 4
cre00900 Terpenoid backbone biosynthesis 2
cre00970 Aminoacyl-tRNA biosynthesis 2
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100263250 837193 100811616 100798275 103843494 7488070 25483622 107940426 107922266 106420156 125578640 102577949 101267857 102591604 107791326 107832559 4350758 100281663 100281747 123180287 123109998 123189717 123413860 8071947 100840652 100838443 5723787
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