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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106452665   lycopene beta cyclase, chloroplastic-like 
 bna-r.1   106377177   lycopene beta cyclase, chloroplastic 
 bra-r.6   103870482   lycopene beta cyclase, chloroplastic 
 ath-u.5   LYC   lycopene cyclase 
 ghi-r.1   107954454   lycopene beta cyclase, chloroplastic/chromoplastic 
 ghi-r.1   107935548   lycopene beta cyclase, chloroplastic/chromoplastic 
 cit-r.1   102578042   lycopene beta-cyclase 1 
 gma-u.5   100810895   lycopene beta cyclase, chloroplastic 
 gma-u.5   100783830   lycopene beta cyclase, chloroplastic 
 vvi-u.5   100252133   lycopene beta cyclase, chloroplastic 
 ppo-u.5   7496096   lycopene beta cyclase, chloroplastic/chromoplastic 
 ppo-u.5   7458943   lycopene beta cyclase, chloroplastic/chromoplastic 
 mtr-u.5   11419142   lycopene beta cyclase, chloroplastic/chromoplastic 
 sly-u.5   LCY1   lycopene beta-cyclase 
 sly-u.5   101267662   lycopene beta cyclase, chloroplastic 
 sot-r.1   102595971   lycopene beta cyclase, chloroplastic 
 sot-r.1   102597428   lycopene beta cyclase, chloroplastic 
 nta-r.1   107809095   lycopene beta cyclase, chloroplastic-like 
 nta-r.1   107763207   lycopene beta cyclase, chloroplastic 
 osa-u.5   4328572   lycopene beta cyclase, chloroplastic 
 zma-u.5   100383002   pink scutellum 1 
 tae-r.2   123127204   lycopene beta cyclase, chloroplastic 
 tae-r.2   123136803   lycopene beta cyclase, chloroplastic 
 tae-r.2   101290666   lycopene beta cyclase, chloroplastic 
 hvu-r.1   123404754   lycopene beta cyclase, chloroplastic 
 sbi-r.1   8077659   lycopene beta cyclase, chloroplastic 
 bdi-r.1   104583450   lycopene beta cyclase, chloroplastic 
 cre-r.1   CHLRE_08g358538v5   uncharacterized protein 

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Top 50 coexpressed genes to 106452665 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106452665 (bna-r.1 coexpression data)

CoexMap"106452665"


bnaLOC106452665 | Entrez gene ID : 106452665    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 2 1 2 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00906 [list] [network] Carotenoid biosynthesis (106 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (36 genes)  IEA  
GO CC
GO MF
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (1035 genes)  IEA  
Protein NP_001303063.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  chlo 1,  cysk 1,  nucl_plas 1  (predict for NP_001303063.1)
Subcellular
localization
TargetP
other 5  (predict for NP_001303063.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106452665
bna-r.1
for
106377177
bra-r.6
for
103870482
ath-u.5
for
LYC
ghi-r.1
for
107954454
ghi-r.1
for
107935548
cit-r.1
for
102578042
gma-u.5
for
100810895
gma-u.5
for
100783830
vvi-u.5
for
100252133
ppo-u.5
for
7496096
ppo-u.5
for
7458943
mtr-u.5
for
11419142
sly-u.5
for
LCY1
sly-u.5
for
101267662
sot-r.1
for
102595971
sot-r.1
for
102597428
nta-r.1
for
107809095
nta-r.1
for
107763207
osa-u.5
for
4328572
zma-u.5
for
100383002
tae-r.2
for
123127204
tae-r.2
for
123136803
tae-r.2
for
101290666
hvu-r.1
for
123404754
sbi-r.1
for
8077659
bdi-r.1
for
104583450
cre-r.1
for
CHLRE_08g358538v5


Ortholog ID: 8452
Species bna bna bra ath ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106452665 LOC106377177 LOC103870482 LYC LOC107954454 LOC107935548 LOC102578042 LOC100810895 LOC100783830 LOC100252133 LOC7496096 LOC7458943 LOC11419142 LCY1 LOC101267662 LOC102595971 LOC102597428 LOC107809095 LOC107763207 LOC4328572 LOC100383002 LOC123127204 LOC123136803 LOC101290666 LOC123404754 LOC8077659 LOC104583450 CHLRE_08g358538v5
Function* lycopene beta cyclase, chloroplastic-like lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene cyclase lycopene beta cyclase, chloroplastic/chromoplastic lycopene beta cyclase, chloroplastic/chromoplastic lycopene beta-cyclase 1 lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic/chromoplastic lycopene beta cyclase, chloroplastic/chromoplastic lycopene beta cyclase, chloroplastic/chromoplastic lycopene beta-cyclase lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic-like lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic pink scutellum 1 lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic lycopene beta cyclase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 6
bna00220 Arginine biosynthesis 5
bna00250 Alanine, aspartate and glutamate metabolism 5
bna00260 Glycine, serine and threonine metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna00040 Pentose and glucuronate interconversions 2
bna00220 Arginine biosynthesis 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00630 Glyoxylate and dicarboxylate metabolism 6
bra01230 Biosynthesis of amino acids 5
bra00710 Carbon fixation by Calvin cycle 4
bra00220 Arginine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
gma01240 Biosynthesis of cofactors 3
gma00906 Carotenoid biosynthesis 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
gma01240 Biosynthesis of cofactors 3
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 6
ppo00630 Glyoxylate and dicarboxylate metabolism 4
ppo00250 Alanine, aspartate and glutamate metabolism 3
ppo00260 Glycine, serine and threonine metabolism 3
ppo01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 8
sly00710 Carbon fixation by Calvin cycle 5
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly00260 Glycine, serine and threonine metabolism 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 4
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa01200 Carbon metabolism 3
osa00785 Lipoic acid metabolism 2
osa01230 Biosynthesis of amino acids 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 2
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00270 Cysteine and methionine metabolism 2
bdi00543 Exopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106452665 106377177 103870482 820185 107954454 107935548 102578042 100810895 100783830 100252133 7496096 7458943 11419142 544104 101267662 102595971 102597428 107809095 107763207 4328572 100383002 123127204 123136803 101290666 123404754 8077659 104583450 5729253
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