KEGG 04712 Circadian rhythm - plant
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 24
ath03008 Ribosome biogenesis in eukaryotes 6
ath04120 Ubiquitin mediated proteolysis 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 66
gma03008 Ribosome biogenesis in eukaryotes 12
gma04075 Plant hormone signal transduction 4
gma00941 Flavonoid biosynthesis 2
gma04120 Ubiquitin mediated proteolysis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 16
sly00941 Flavonoid biosynthesis 3
sly03008 Ribosome biogenesis in eukaryotes 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 15
osa03008 Ribosome biogenesis in eukaryotes 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 45
zma03008 Ribosome biogenesis in eukaryotes 6
zma00941 Flavonoid biosynthesis 3
zma04075 Plant hormone signal transduction 3
zma04120 Ubiquitin mediated proteolysis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 36
bra00941 Flavonoid biosynthesis 6
bra03008 Ribosome biogenesis in eukaryotes 2
bra04120 Ubiquitin mediated proteolysis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 21
vvi00941 Flavonoid biosynthesis 11
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 14
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 34
mtr00941 Flavonoid biosynthesis 14
mtr00940 Phenylpropanoid biosynthesis 3
mtr04075 Plant hormone signal transduction 2
mtr03008 Ribosome biogenesis in eukaryotes 2
Gene list in the network
Symbol Function*
AT2G23070 Protein kinase superfamily protein
ELF3 hydroxyproline-rich glycoprotein family protein
COP1 Transducin/WD40 repeat-like superfamily protein
ELF4 EARLY FLOWERING-like protein (DUF1313)
CKB4 casein kinase II beta subunit 4
SPA1 SPA (suppressor of phyA-105) protein family
PRR9 pseudo-response regulator 9
CCA1 circadian clock associated 1
COL9 CONSTANS-like 9
RVE8 Homeodomain-like superfamily protein
AT3G12320 hypothetical protein
PCL1 Homeodomain-like superfamily protein
CKA2 casein kinase II, alpha chain 2
CKB3 casein kinase II beta chain 3
CRY1 cryptochrome 1
FBW2 F-BOX WITH WD-40 2
AT4G15430 ERD (early-responsive to dehydration stress) family protein
BBX19 B-box type zinc finger family protein
HY5 Basic-leucine zipper (bZIP) transcription factor family protein
AT5G15950 Adenosylmethionine decarboxylase family protein
ABCI20 non-intrinsic ABC protein 9
PRR7 pseudo-response regulator 7
RUP2 Transducin/WD40 repeat-like superfamily protein
PRR5 two-component response regulator-like protein
CKB1 casein kinase II beta chain 1
BBX8 B-box type zinc finger protein with CCT domain-containing protein
RUP1 Transducin/WD40 repeat-like superfamily protein
PDC2 pyruvate decarboxylase-2
PRR3 pseudo-response regulator 3
TOC1 CCT motif -containing response regulator protein
CDF1 cycling DOF factor 1
AT5G64170 dentin sialophosphoprotein-like protein
CKA1 casein kinase alpha 1
AT1G13670 hypothetical protein
GI gigantea protein (GI)
LHY Homeodomain-like superfamily protein
CRY2 cryptochrome 2
ABF1 abscisic acid responsive element-binding factor 1
SPA4 SPA1-related 4
AT1G56300 Chaperone DnaJ-domain superfamily protein
FKF1 flavin-binding, kelch repeat, f box 1
Symbol Function*
PHYA phytochrome A
MYB114 MYB transcription factor MYB114
LCL3 LHY1/CCA1-like protein
LCL4 LHY1/CCA1-like protein
CHS8 chalcone synthase
CRY1a cryptochrome 1
LOC100233234 cryptochrome 2
LCL1 late elongated hypocotyl and circadian clock associated-1-like protein 1
TOC1 timing of CAB expression 1
ZTL1 PAS protein ZEITLUPE 1
ZTL2 clock-associated PAS protein ZEITLUPE 2
FKF1 circadian clock-associated FKF1
LOC100775912 uncharacterized LOC100775912
LOC100776388 casein kinase II subunit alpha
LOC100777119 two-component response regulator-like PRR95
LOC100778303 protein SPA1-RELATED 2
GIGANTEA protein GIGANTEA
LOC100779346 two-component response regulator-like APRR5
LOC100779376 lysine-specific demethylase JMJ30
LOC100779717 protein LNK3-like
LOC100779812 uncharacterized LOC100779812
LOC100780095 putative casein kinase II subunit beta
LOC100781565 protein LNK2
LOC100781641 protein GIGANTEA
LOC100782271 transcription factor TCP7
LOC100782655 zinc finger protein CONSTANS-LIKE 9
CHS7 chalcone synthase 7
LOC100783074 uncharacterized LOC100783074
LOC100784300 protein SPA1-RELATED 2
LOC100784315 putative casein kinase II subunit beta
LOC100784383 two-component response regulator-like APRR9
PIF3 bHLH transcription factor PIF3
LOC100784848 putative casein kinase II subunit beta
PRR3A two-component response regulator PRR3A
LOC100786522 two-component response regulator-like APRR1
LOC100786551 cryptochrome-1-like
LOC100787778 probable protein phosphatase 2C 60
LOC100788038 protein EARLY FLOWERING 3
LOC100788166 uncharacterized LOC100788166
LOC100788171 E3 ubiquitin-protein ligase COP1
LOC100788246 cyclic dof factor 1
LOC100789357 putative casein kinase II subunit beta
E4 phytochrome A
LOC100791698 two-component response regulator-like PRR95
ELF3A protein EARLY FLOWERING 3a
LOC100793573 putative casein kinase II subunit beta-4
LOC100794090 exocyst complex component SEC5A
LOC100794865 phytochrome B-like
LOC100794974 transcription factor PIF3
LOC100796933 two-component response regulator-like APRR7
LOC100797839 cryptochrome-1-like
LOC100798442 plant intracellular Ras-group-related LRR protein 5
DNAJ chaperone protein DnaJ-like
LOC100799005 transcription factor TCP7
LOC100799267 protein SUPPRESSOR OF PHYA-105 1
LOC100799304 putative casein kinase II subunit beta
LOC100799728 two-component response regulator-like APRR1
PHYB phytochrome B-like
LOC100800443 transcription factor TCP7
E2 protein GIGANTEA
LOC100800844 NADP-dependent malic enzyme
LOC100802144 protein SUPPRESSOR OF PHYA-105 1
LOC100802442 26S proteasome regulatory subunit 4 homolog A
LOC100802674 two-component response regulator-like PRR95
ZTL adagio protein 1
PRR3B two-component response regulator PRR3B
LOC100804665 transcription factor PIF3
LOC100805161 tubby-like F-box protein 3-like
LOC100805523 adagio protein 1
LOC100806368 transcription factor bHLH122
LOC100806454 two-component response regulator-like APRR7
LOC100808627 cryptochrome-2-like
LOC100809490 two-component response regulator-like PRR95
LOC100810748 casein kinase II subunit alpha-2
LOC100811457 protein SPA1-RELATED 3
LOC100812253 adagio protein 3
LOC100813528 casein kinase II subunit alpha-2
LOC100813745 E3 ubiquitin-protein ligase COP1
LOC100813917 two-component response regulator-like APRR1
LOC100815428 cryptochrome-1-like
GLYII-7 putative hydroxyacylglutathione hydrolase
LOC100817795 casein kinase II subunit alpha-4, chloroplastic
ELF3B protein EARLY FLOWERING 3b
LOC100819679 casein kinase II subunit alpha-2
LOC100820151 transcription factor PIF3
LOC100820316 serine acetyltransferase 1, chloroplastic
LOC100820471 casein kinase II subunit alpha-1-like
LOC102662861 uncharacterized LOC102662861
LOC112998553 receptor-like protein kinase HSL1
Symbol Function*
CRY1a cryptochrome 1
CHS1 chalcone synthase
CHS2 chalcone synthase
UBC3 ubiquitin conjugating enzyme
LOC101245655 putative casein kinase II subunit beta-4
LOC101247525 serine/threonine-protein kinase AFC2
LOC101248645 heat stress transcription factor C-1
LOC101249224 two-component response regulator-like PRR73
LOC101249856 putative casein kinase II subunit beta-4
LOC101250283 two-component response regulator-like APRR5
Cyp-3 cysteine proteinase 3
LOC101253545 protein REVEILLE 8
LOC101253569 homeobox-leucine zipper protein HDG11
LOC101253889 uncharacterized LOC101253889
LOC101254090 zinc finger protein CONSTANS-LIKE 14-like
LOC101254785 two-component response regulator-like PRR37
LOC101255788 protein GIGANTEA
LOC101255826 probable sodium/metabolite cotransporter BASS3, chloroplastic
LOC101256908 adagio protein 3
LOC101257080 uncharacterized LOC101257080
LOC101258346 protein GIGANTEA-like
LOC101259425 two-component response regulator-like APRR1
LOC101261662 protein LHY
PHYB1 phytochrome B1
LOC101262866 two-component response regulator-like APRR9
LOC101263619 dof zinc finger protein DOF5.4
PHYB2 phytochrome B2
LOC101266223 probable chalcone--flavonone isomerase 3
LOC101268238 peptide chain release factor PrfB3, chloroplastic
LOC113002614 transcription factor LUX-like
Symbol Function*
LOC4324539 protein LNK2
LOC4325329 protein GIGANTEA-like
LOC4327159 uncharacterized LOC4327159
LOC4327616 RING-H2 finger protein ATL74
LOC4329738 cryptochrome-1
LOC4330000 two-component response regulator-like PRR1
LOC4330868 E3 ubiquitin-protein ligase COP1
LOC4332464 two-component response regulator-like PRR73
LOC4336008 cryptochrome-1
LOC4339306 CBL-interacting protein kinase 19-like
LOC4339663 protein SUPPRESSOR OF PHYA-105 1
LOC4341923 adagio-like protein 1
LOC4343287 putative casein kinase II subunit beta-4
LOC4344171 F-box protein SKIP5
LOC4344399 two-component response regulator-like PRR37
LOC4344703 protein LHY
LOC4346686 ethylene-responsive transcription factor ERF117
LOC4346746 bifunctional protein FolD 1, mitochondrial
LOC4347674 two-component response regulator-like PRR95
LOC4349414 putative casein kinase II subunit beta-4
LOC4349831 two-component response regulator-like APRR3
LOC4350698 adagio-like protein 3
LOC4352641 uncharacterized LOC4352641
LOC9269734 lysine-specific demethylase JMJ30
Symbol Function*
LOC541824 casein kinase II subunit beta-4
LOC541918 early light-inducible protein ELIP
LOC542460 CK2 protein kinase alpha 2
LOC542628 uncharacterized LOC542628
LOC100147733 uncharacterized LOC100147733
LOC100191603 uncharacterized LOC100191603
LOC100192856 SAM domain protein
LOC100192868 uncharacterized LOC100192868
LOC100192956 uncharacterized LOC100192956
LOC100193013 uncharacterized LOC100193013
LOC100194126 cryptochrome2
LOC100272683 uncharacterized LOC100272683
LOC100272803 uncharacterized LOC100272803
LOC100273598 Two-component response regulator-like APRR9
LOC100274415 chalcone synthase
LOC100274468 uncharacterized LOC100274468
LOC100275443 uncharacterized LOC100275443
LOC100275707 uncharacterized LOC100275707
LOC100277218 uncharacterized LOC100277218
LOC100279342 E3 ubiquitin-protein ligase COP1
LOC100279726 Adagio protein 3
LOC100279991 uncharacterized LOC100279991
LOC100280240 PseuodARR-B transcription factor
LOC100280972 uncharacterized LOC100280972
LOC100281064 B-box zinc finger family protein
LOC100281091 LHY protein
LOC100281158 uncharacterized LOC100281158
LOC100281433 uncharacterized LOC100281433
LOC100281577 uncharacterized LOC100281577
LOC100282642 chalcone synthase
LOC100282872 holocarboxylase synthetase
LOC100283448 casein kinase II subunit beta-4
LOC100284018 chalcone--flavonone isomerase
LOC100284201 uncharacterized LOC100284201
LOC100285170 two-component response regulator-like PRR95
LOC100285610 uncharacterized LOC100285610
LOC100286122 ubiquitin ligase protein COP1
LOC100286123 uncharacterized LOC100286123
LOC100381775 Two-component response regulator-like APRR9
LOC100381811 phytochromeB2
LOC100382453 uncharacterized LOC100382453
LOC100383277 uncharacterized LOC100383277
LOC100383702 Phytochrome B
LOC100383823 Topoisomerase II-associated protein PAT1
LOC100384276 Protein SUPPRESSOR OF PHYA-105 1
LOC100384475 uncharacterized LOC100384475
LOC100501093 uncharacterized LOC100501093
LOC100502340 uncharacterized LOC100502340
LOC100502533 cryptochrome 2
LOC100526751 TOC1b
LOC103625865 casein kinase II subunit alpha-2
LOC103626364 adagio-like protein 1
LOC103626626 putative adagio-like protein 2
LOC103627461 transcription factor TCP21
LOC103629610 adagio-like protein 1
LOC103630007 BTB/POZ domain-containing protein
LOC103630699 uncharacterized LOC103630699
LOC103630791 ELF3-like protein 2
LOC103633528 F-box protein SKIP5
LOC103633607 two-component response regulator-like PRR37
LOC103634871 transcription factor HY5
LOC103635349 protein SUPPRESSOR OF PHYA-105 1
LOC103638645 transcription factor HY5
LOC103641361 transcription factor APG
LOC103641861 transcription factor PCF1
LOC103643916 phytochrome A-like
LOC103647963 two-component response regulator-like PRR37
LOC103654587 probable NAD kinase 2, chloroplastic
LOC109942404 BTB/POZ domain-containing protein At2g30600
LOC109945291 transcription factor PCL1
Symbol Function*
LOC103249166 protein GIGANTEA
LOC103827964 uncharacterized LOC103827964
LOC103828354 adagio protein 2-like
LOC103829037 zinc finger protein CONSTANS-LIKE 15-like
LOC103830010 chalcone--flavonone isomerase-like
LOC103831048 4-coumarate--CoA ligase 3
LOC103831057 protein TWIN SISTER of FT-like
LOC103831556 probable galacturonosyltransferase-like 9
LOC103833609 tryptophan aminotransferase-related protein 4-like
LOC103833904 protein SPA1-RELATED 2
LOC103835148 B-box zinc finger protein 20
LOC103836661 protein LHY-like
LOC103837062 two-component response regulator-like APRR5
LOC103837378 two-component response regulator-like APRR1
LOC103838086 CRM-domain containing factor CFM3, chloroplastic/mitochondrial
LOC103839218 WD repeat-containing protein 26
LOC103841428 chalcone--flavonone isomerase
LOC103841538 uncharacterized LOC103841538
LOC103842445 casein kinase II subunit alpha-4, chloroplastic
LOC103843176 serine carboxypeptidase-like 50
LOC103843908 protein DETOXIFICATION 33
LOC103844616 protein LHY
LOC103845423 two-component response regulator-like APRR3
LOC103845579 protein STRICTOSIDINE SYNTHASE-LIKE 3
LOC103846527 chalcone synthase 1
HY5 transcription factor HY5
LOC103846880 probable chalcone--flavonone isomerase 3
LOC103847150 transcription factor TCP21-like
LOC103847424 two-component response regulator-like APRR7
LOC103848060 protein REVEILLE 8-like
LOC103850461 two-component response regulator-like APRR7
LOC103850694 transcription factor TCP21-like
LOC103850763 transcription factor HY5-like
LOC103850907 chalcone synthase 3-like
LOC103851089 glutathione S-transferase F12
LOC103852241 protein FLOWERING LOCUS T
LOC103853110 F-box protein At1g78100-like
LOC103854859 two-component response regulator-like APRR5
LOC103855006 cyclic dof factor 1-like
LOC103855503 protein REVEILLE 4-like
LOC103856040 chalcone synthase 3-like
LOC103857028 TBC1 domain family member 15-like
LOC103858211 protein SUPPRESSOR OF PHYA-105 1-like
LOC103859441 protein LNK3-like
LOC103859717 transcription factor HY5-like
LOC103859900 protein EARLY FLOWERING 3-like
LOC103860589 two-component response regulator-like APRR1
LOC103863377 protein DETOXIFICATION 35-like
LOC103864454 casein kinase II subunit alpha-4, chloroplastic
LOC103864705 protein EARLY FLOWERING 3
LOC103865141 B-box zinc finger protein 25-like
LOC103865427 transcription factor TCP7-like
LOC103865631 WD repeat-containing protein RUP2
LOC103865795 putative sodium-coupled neutral amino acid transporter 7
LOC103866306 two-component response regulator-like APRR9
CCA1 cataract, congenital, cerulean type, 1
LOC103866432 two-component response regulator-like APRR9
LOC103866477 protein SUPPRESSOR OF PHYA-105 1
LOC103867497 nudix hydrolase 22, chloroplastic
LOC103867588 E3 ubiquitin-protein ligase COP1
LOC103869673 transcription factor HY5-like
LOC103870531 protein REVEILLE 8
LOC103871728 phytochrome A
LOC103874198 transcription factor TCP7-like
LOC103874318 two-component response regulator-like APRR5
Symbol Function*
STS stilbene synthase
CHS chalcone synthase
CHI chalcone isomerase
LOC100241164 stilbene synthase 6-like
LOC100241575 phenylalanine ammonia-lyase-like
LOC100242903 stilbene synthase 4
STS stilbene synthase
LOC100243038 deoxyribodipyrimidine photo-lyase
LOC100244123 carbon catabolite repressor protein 4 homolog 3
LOC100246063 E3 ubiquitin-protein ligase COP1
LOC100246283 stilbene synthase 5
LOC100246836 two-component response regulator-like PRR37
LOC100248068 protein LNK2
LOC100252509 uncharacterized LOC100252509
LOC100253166 stilbene synthase 1
LOC100253885 two-component response regulator-like APRR9
LOC100254045 stilbene synthase 4-like
LOC100254197 protein GIGANTEA
LOC100254423 zinc finger protein CONSTANS-LIKE 9
LOC100254525 WD repeat-containing protein LWD1
LOC100255380 zinc finger protein CONSTANS-LIKE 9
LOC100255961 protein EARLY FLOWERING 3
LOC100255972 adagio protein 3
LOC100256592 protein EARLY FLOWERING 3
LOC100256937 two-component response regulator-like PRR37
CHS3 chalcone synthase
LOC100259281 F-box/LRR-repeat protein 14
LOC100260554 stilbene synthase 4-like
LOC100261472 transcription factor HY5-like
LOC100262321 stilbene synthase 2
LOC100263024 protein NUCLEAR FUSION DEFECTIVE 4
LOC100263437 stilbene synthase 1
CHS chalcone synthase
LOC100853219 two-component response regulator-like APRR5
LOC100853675 stilbene synthase 4
LOC104879018 transcription factor HY5
LOC104879582 extensin-like
Symbol Function*
LOC7457536 uncharacterized LOC7457536
LOC7458626 two-component response regulator-like PRR37
LOC7459749 adagio protein 3
LOC7462882 uncharacterized LOC7462882
LOC7468530 E3 ubiquitin-protein ligase COP1
LOC7468625 transcription factor BOA
LOC7469344 zinc finger protein CONSTANS-LIKE 9
LOC7470724 protein EARLY FLOWERING 3
LOC7474031 uncharacterized LOC7474031
LOC7482913 adagio protein 3
LOC7485825 phytochrome B
LOC7485902 phytochrome B
LOC7486597 cryptochrome-1
LOC7486808 two-component response regulator-like APRR9
LOC7486837 transcription factor PIF3
LOC7487745 two-component response regulator-like APRR5
LOC7488720 protein DETOXIFICATION 44, chloroplastic
LOC7492485 protein GIGANTEA
LOC7492759 protein SUPPRESSOR OF PHYA-105 1
LOC7495156 cryptochrome-1
Symbol Function*
LOC11405950 phytochrome A
LOC11406493 transcription factor PIF3
LOC11407003 chalcone synthase 4
LOC11407242 geraniol 8-hydroxylase
LOC11407388 uncharacterized LOC11407388
LOC11409835 nudix hydrolase 8
LOC11410562 protein GIGANTEA
LOC11410839 casein kinase II subunit alpha-2
LOC11412120 two-component response regulator-like APRR3
LOC11412566 uncharacterized LOC11412566
LOC11413539 feruloyl CoA ortho-hydroxylase 1
LOC11417024 adagio protein 3
LOC11418495 dirigent protein 2
LOC11418796 chalcone synthase 2
LOC11420025 phytochrome B
LOC11420334 chalcone synthase 8
LOC11420610 chalcone synthase 2
LOC11420611 chalcone synthase 2
LOC11420758 E3 ubiquitin-protein ligase COP1
LOC11421144 chalcone synthase 2
LOC11421945 uncharacterized LOC11421945
LOC11423615 transcription factor TCP7
LOC11423831 protein LNK3
LOC11423879 transcription factor TCP7
LOC11424172 chalcone synthase 2
LOC11424990 dehydration-responsive element-binding protein 2A
LOC11426040 4-coumarate--CoA ligase 2
LOC11426713 two-component response regulator-like APRR9
LOC11428875 cryptochrome-1
LOC11429020 dihydrofolate reductase
LOC11429351 phenylalanine ammonia-lyase class 3
LOC11430084 probable calcium-binding protein CML18
LOC11430161 casein kinase II subunit beta-1
LOC11431402 protein EARLY FLOWERING 3
LOC11432044 probable terpene synthase 11
LOC11432385 protein LHY
LOC11433811 heat stress transcription factor B-3
LOC11435974 zinc finger protein CONSTANS-LIKE 9
LOC11436702 chalcone synthase 4
LOC11437345 two-component response regulator-like APRR9
LOC11438457 ethanolamine-phosphate cytidylyltransferase
LOC11438511 chalcone synthase 1A
LOC11438557 zinc finger protein CONSTANS-LIKE 15
LOC11439469 chalcone synthase 1B
LOC11440965 probable serine/threonine-protein kinase WNK6
LOC11442534 chalcone synthase 4
LOC11443162 uncharacterized LOC11443162
LOC11443391 26S proteasome regulatory subunit 7
LOC11444240 ABC transporter F family member 5
LOC25482360 abscisic acid receptor PYL8
LOC25484061 two-component response regulator-like APRR7
LOC25485043 chalcone synthase 8
LOC25487200 B-box zinc finger protein 22
LOC25487872 putative E3 ubiquitin-protein ligase XBAT31
LOC25488813 two-component response regulator-like APRR1
LOC25492970 uncharacterized LOC25492970
LOC25493836 two-component response regulator-like APRR1
LOC25494362 protein STICHEL
LOC25494497 chalcone synthase 9
LOC25494498 chalcone synthase 9
LOC25498574 ultraviolet-B receptor UVR8
LOC25499576 secreted acidic protein 2
LOC25500611 two-component response regulator-like APRR5
LOC25500758 ribonuclease 2
LOC25502460 mitogen-activated protein kinase 19


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