ATTED-II : GeneID search result

[←][→] ath At4g17940 Gene

functional annotation

Function

Tetratricopeptide repeat (TPR)-like superfamily protein

GO BP

GO:0001666 [list] [network] response to hypoxia	(325 genes)	IEA
GO:0009737 [list] [network] response to abscisic acid	(1086 genes)	IEA
GO:0048364 [list] [network] root development	(1192 genes)	IEA
GO:0023052 [list] [network] signaling	(2117 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(5004 genes)

ISM

GO MF

KEGG

Protein

NP_567545.1

BLAST

NP_567545.1

Orthologous

[Ortholog page] LOC4349493 (osa) LOC11434959 (mtr) LOC18094150 (ppo) LOC100788211 (gma) LOC100809078 (gma) LOC101247449 (sly) LOC103834041 (bra) LOC103855897 (bra) LOC123091586 (tae) LOC123127768 (tae) LOC123168442 (tae) LOC123410974 (hvu)

Subcellular
localization
wolf

chlo 5, mito 4

(predict for NP_567545.1)

Subcellular
localization
TargetP

mito 7, chlo 5

(predict for NP_567545.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	3

Genes directly connected with AT4G17940 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
4.8	AT3G02340	RING/U-box superfamily protein	[detail]	821090
4.7	CSP3	cold shock domain protein 3	[detail]	816297
4.6	NSP5	nitrile specifier protein 5	[detail]	834871

Coexpressed
gene list

[Coexpressed gene list for AT4G17940]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254702_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254702_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254702_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827519
Refseq ID (protein)	NP_567545.1

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