ATTED-II : GeneID search result

[←][→] ath At5g12900 Gene

functional annotation

Function

DNA double-strand break repair RAD50 ATPase

GO BP

GO:0009737 [list] [network] response to abscisic acid

(1086 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

ISM

GO MF

GO:0005515 [list] [network] protein binding

(5066 genes)

IPI

KEGG

Protein

NP_196794.1

BLAST

NP_196794.1

Orthologous

[Ortholog page] LOC4345989 (osa) LOC4347434 (osa) LOC7487041 (ppo) LOC11431422 (mtr) LOC18097272 (ppo) LOC25492609 (mtr) LOC100779911 (gma) LOC100786740 (gma) LOC100806871 (gma) LOC100814681 (gma) LOC101252211 (sly) LOC101266150 (sly) LOC103846620 (bra) LOC103850832 (bra) LOC103855985 (bra) LOC112941069 (sly) LOC123104165 (tae) LOC123112403 (tae) LOC123121925 (tae) LOC123151187 (tae) LOC123160115 (tae) LOC123166450 (tae) LOC123399385 (hvu) LOC123410543 (hvu)

Subcellular
localization
wolf

nucl 4, cyto 1, golg 1, chlo 1, mito 1, plas 1, vacu 1, E.R. 1, chlo_mito 1, E.R._vacu 1, cyto_pero 1, E.R._plas 1, mito_plas 1

(predict for NP_196794.1)

Subcellular
localization
TargetP

chlo 7, other 3

(predict for NP_196794.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT5G12900 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
5.3	AT3G51950	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	[detail]	824358
5.2	AT5G09460	transcription factor bHLH143	[detail]	830805
4.9	BAM1	Leucine-rich receptor-like protein kinase family protein	[detail]	836699
4.7	AT4G33440	Pectin lyase-like superfamily protein	[detail]	829481
4.3	AT2G43340	hypothetical protein (DUF1685)	[detail]	818935

Coexpressed
gene list

[Coexpressed gene list for AT5G12900]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

250265_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

250265_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

250265_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	831130
Refseq ID (protein)	NP_196794.1

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