cis; CGTCACA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGTCACA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGTCACA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.64At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.58At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.58At1g77450no apical meristem (NAM) family protein NAC
0.56At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.55At3g61890homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 ((ATHB-12)) Homeobox
0.54At4g05100myb family transcription factor (MYB74) MYB
0.53At2g46680homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 ((ATHB-7)) Homeobox
0.52At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.51At5g62020heat shock factor protein, putative (HSF6) / heat shock transcription factor, putative (HTSF6) ((AT-HSFB2A)) HSF
0.51At4g21440myb family transcription factor (MYB102) MYB
0.51At2g46270G-box binding factor 3 (GBF3) ((GBF3)) bZIP
0.50At2g38250DNA-binding protein-related Trihelix
0.48At4g36900AP2 domain-containing protein RAP2.10 (RAP2.10) AP2-EREBP
0.48At1g52890no apical meristem (NAM) family protein NAC
0.48At5g12840CCAAT-binding transcription factor (CBF-B/NF-YA) family protein ((HAP2A)) CCAAT-HAP2

link to other 304 cis elements in ATTED

similar seq.
←CGTCACA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGTGACG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGTCACA1.000.07131
AACGTGT0.830.0790
CGCGTCA0.800.07193
AACACGT0.780.0794
ACGCGTC0.760.0790
CTCGACA0.740.06103
CACGTGT0.720.1292
CACACGT0.710.0670
ACACGTT0.710.0633
CGCGTAA0.700.07199