cis; CTGCCGA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CTGCCGA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CTGCCGA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.53At5g01380expressed protein Trihelix
0.50At4g32800AP2 domain-containing transcription factor TINY, putative AP2-EREBP
0.49At1g22810AP2 domain-containing transcription factor, putative AP2-EREBP
-0.49At2g21240expressed protein BBR%2FBPC
0.49At2g38250DNA-binding protein-related Trihelix
0.47At3g52800zinc finger (AN1-like) family protein C2H2
0.46At5g43170zinc finger (C2H2 type) protein 3 (AZF3) ((AZF3)) C2H2
0.46At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.45At4g01250WRKY family transcription factor ((WRKY22)) WRKY
-0.45At1g80400zinc finger (C3HC4-type RING finger) family protein C3H
0.45At3g02150TCP family transcription factor, putative ((PTF1, TFPD)) TCP
0.45At3g01560proline-rich family protein Trihelix
-0.44At5g40710zinc finger (C2H2 type) family protein C2H2
0.44At2g45680TCP family transcription factor, putative TCP
0.44At1g80840WRKY family transcription factor ((WRKY40)) WRKY

link to other 304 cis elements in ATTED

similar seq.
←CTGCCGA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TCGGCAG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CTGCCGA1.000.081
GGACGGC0.860.0772
CGCGTTT0.780.1193
ACCGCGT0.760.1098
ACGCGGT0.750.09141
TTACGCG0.740.07194
AACCGCG0.740.0985
ACGCGTT0.730.1096
CCGCGTT0.730.1017
ATACGCG0.730.0639