cis; CTGCCGA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CTGCCGA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CTGCCGA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.53At5g01380expressed protein Trihelix
0.50At4g32800AP2 domain-containing transcription factor TINY, putative AP2-EREBP
0.49At1g22810AP2 domain-containing transcription factor, putative AP2-EREBP
-0.49At2g21240expressed protein BBR%2FBPC
0.49At2g38250DNA-binding protein-related Trihelix
0.47At3g52800zinc finger (AN1-like) family protein C2H2
0.46At5g43170zinc finger (C2H2 type) protein 3 (AZF3) ((AZF3)) C2H2
0.46At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.45At4g01250WRKY family transcription factor ((WRKY22)) WRKY
-0.45At1g80400zinc finger (C3HC4-type RING finger) family protein C3H
0.45At3g02150TCP family transcription factor, putative ((PTF1, TFPD)) TCP
0.45At3g01560proline-rich family protein Trihelix
-0.44At5g40710zinc finger (C2H2 type) family protein C2H2
0.44At2g45680TCP family transcription factor, putative TCP
0.44At1g80840WRKY family transcription factor ((WRKY40)) WRKY

link to other 304 cis elements in ATTED

similar seq.
CTGCCGA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TCGGCAG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CTGCCGA1.000.081
GGACGGC0.860.0772
CGCGTTT0.780.1193
ACCGCGT0.760.1098
ACGCGGT0.750.09141
TTACGCG0.740.07194
AACCGCG0.740.0985
ACGCGTT0.730.1096
CCGCGTT0.730.1017
ATACGCG0.730.0639