cis; GGACGGC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGACGGC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGACGGC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.46At2g46510basic helix-loop-helix (bHLH) family protein BHLH
0.42At1g74430myb family transcription factor (MYB95) ((MYB95)) MYB
0.40At1g64380AP2 domain-containing transcription factor, putative AP2-EREBP
-0.40At1g65040zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
←GGACGGC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GCCGTCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGACGGC1.000.0772
CTGCCGA0.860.081
TCCGCGT0.720.07156
ACGCGGA0.700.07116
CGTCCCG0.690.11129
CGCGTTC0.690.06177
CCGCGTT0.670.1017
CGCGTTT0.660.1193
AACGCGT0.650.10127
ATACGCG0.650.0639