cis; GCGTTCG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCGTTCG

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCGTTCG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.47At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.41At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.41At2g46830myb-related transcription factor (CCA1) ((CCA1)) MYB-related
0.40At1g22510zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
←GCGTTCG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CGAACGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCGTTCG1.000.0794
CTCCGCG0.810.07100
GCGTATG0.730.0653
ATACGCG0.720.0639
CGCGTTT0.710.1193
ACCGCGT0.700.1098
AACCGTG0.690.07113
AACCGCG0.690.0985
TACGCGG0.690.0653
AATCCCA0.680.068