| functional annotation |
| Function |
SPA (suppressor of phyA-105) protein family |
|
| GO BP |
|
GO:0048575 [list] [network] short-day photoperiodism, flowering
|
(4 genes)
|
IMP
|
 |
|
GO:0010100 [list] [network] negative regulation of photomorphogenesis
|
(13 genes)
|
IMP
|
|
|
GO:0009585 [list] [network] red, far-red light phototransduction
|
(54 genes)
|
IEA
IGI
|
|
|
GO:0010218 [list] [network] response to far red light
|
(54 genes)
|
IEP
|
|
|
GO:2000028 [list] [network] regulation of photoperiodism, flowering
|
(63 genes)
|
IDA
IMP
|
|
|
GO:0009640 [list] [network] photomorphogenesis
|
(71 genes)
|
IMP
|
|
|
GO:0010114 [list] [network] response to red light
|
(74 genes)
|
IEP
|
|
|
GO:0010017 [list] [network] red or far-red light signaling pathway
|
(76 genes)
|
IMP
|
|
|
GO:0009637 [list] [network] response to blue light
|
(98 genes)
|
IDA
IMP
|
|
|
GO:0009658 [list] [network] chloroplast organization
|
(194 genes)
|
IMP
|
|
|
GO:0006468 [list] [network] protein phosphorylation
|
(921 genes)
|
IEA
|
|
|
| GO CC |
|
| GO MF |
|
GO:0042802 [list] [network] identical protein binding
|
(288 genes)
|
IPI
|
|
|
GO:0004672 [list] [network] protein kinase activity
|
(1017 genes)
|
IEA
|
|
|
GO:0005524 [list] [network] ATP binding
|
(2003 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
ath04712 [list] [network] Circadian rhythm - plant (36 genes) |
 |
| Protein |
NP_001325255.1
NP_182157.2
|
| BLAST |
NP_001325255.1
NP_182157.2
|
| Orthologous |
[Ortholog page]
SPA2 (ath)
LOC4339663 (osa)
LOC7492759 (ppo)
LOC11437198 (mtr)
LOC25500742 (mtr)
LOC100256812 (vvi)
LOC100257085 (vvi)
LOC100384276 (zma)
LOC100776980 (gma)
LOC100778303 (gma)
LOC100784300 (gma)
LOC100799267 (gma)
LOC100802144 (gma)
LOC100813452 (gma)
LOC101249027 (sly)
LOC101263834 (sly)
LOC103635349 (zma)
LOC103833904 (bra)
LOC103858211 (bra)
LOC103866477 (bra)
|
Subcellular
localization
wolf |
|
nucl 9,
chlo 1,
cysk 1
|
(predict for NP_001325255.1)
|
|
nucl 9,
chlo 1,
cysk 1
|
(predict for NP_182157.2)
|
|
Subcellular
localization
TargetP |
|
other 8
|
(predict for NP_001325255.1)
|
|
other 8
|
(predict for NP_182157.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with SPA1 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 13.2 |
TZP |
zinc knuckle (CCHC-type) family protein |
[detail] |
834383 |
| 9.5 |
SPA3 |
SPA1-related 3 |
[detail] |
820767 |
| 9.0 |
SIGE |
sigma factor E |
[detail] |
832477 |
| 7.8 |
SPA4 |
SPA1-related 4 |
[detail] |
841743 |
| 6.6 |
AT3G04140 |
Ankyrin repeat family protein |
[detail] |
819569 |
| 6.2 |
RPT2 |
Phototropic-responsive NPH3 family protein |
[detail] |
817601 |
| 5.9 |
GLR3.3 |
glutamate receptor 3.3 |
[detail] |
840859 |
| 5.4 |
IPK1 |
inositol-pentakisphosphate 2-kinase 1 |
[detail] |
834292 |
| 5.4 |
AT4G14240 |
CBS domain protein with a domain protein (DUF21) |
[detail] |
827065 |
| 5.1 |
AT1G17360 |
LOW protein: protein phosphatase 1 regulatory subunit-like protein |
[detail] |
838308 |
| 4.9 |
BLH6 |
BEL1-like homeodomain 6 |
[detail] |
829613 |
| 4.6 |
AT3G29760 |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
[detail] |
822663 |
|
Coexpressed
gene list |
[Coexpressed gene list for SPA1]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
263780_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
263780_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
263780_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT2G46340 Gene
