[←][→] ath   AT3G55460 Gene
functional annotation
Function   SC35-like splicing factor 30  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  TAS  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO:0006979 [list] [network] response to oxidative stress  (442 genes)  IDA  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_567021.1 
BLAST NP_567021.1 
Orthologous [Ortholog page] SCL30A (ath)  LOC4328900 (osa)  LOC4344009 (osa)  LOC7457708 (ppo)  LOC7458142 (ppo)  LOC7467550 (ppo)  LOC9268085 (osa)  LOC11432730 (mtr)  LOC11433183 (mtr)  LOC25483590 (mtr)  LOC100193374 (zma)  LOC100193775 (zma)  LOC100258210 (vvi)  LOC100259677 (vvi)  LOC100263951 (vvi)  LOC100283836 (zma)  LOC100285628 (zma)  LOC100775883 (gma)  LOC100779321 (gma)  LOC100792397 (gma)  LOC100804294 (gma)  LOC100816913 (gma)  LOC101259473 (sly)  LOC103628634 (zma)  LOC103849767 (bra)  LOC103863157 (bra)  LOC103870289 (bra)  LOC103871046 (bra)  LOC107275752 (osa) 
Subcellular
localization
wolf
chlo 5,  nucl 4  (predict for NP_567021.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_567021.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03015 mRNA surveillance pathway 2
Genes directly connected with SCL30 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.3 RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 [detail] 818311
8.1 HTA9 histone H2A protein 9 [detail] 841707
7.7 RSZ21 RS-containing zinc finger protein 21 [detail] 838997
7.7 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 836117
6.9 TAFII15 TBP-associated factor II 15 [detail] 829300
5.8 AT3G03330 NAD(P)-binding Rossmann-fold superfamily protein [detail] 821281
5.6 AT5G58110 chaperone binding / ATPase activator [detail] 835923
Coexpressed
gene list		 [Coexpressed gene list for SCL30]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251798_at
251798_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251798_at
251798_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251798_at
251798_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824712      
Refseq ID (protein) NP_567021.1 


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