[←][→] ath   AT3G13570 Gene
functional annotation
Function   SC35-like splicing factor 30A  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IGI TAS  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_187966.1 
BLAST NP_187966.1 
Orthologous [Ortholog page] SCL30 (ath)  LOC4328900 (osa)  LOC4344009 (osa)  LOC7457708 (ppo)  LOC7458142 (ppo)  LOC7467550 (ppo)  LOC9268085 (osa)  LOC11432730 (mtr)  LOC11433183 (mtr)  LOC25483590 (mtr)  LOC100193374 (zma)  LOC100193775 (zma)  LOC100258210 (vvi)  LOC100259677 (vvi)  LOC100263951 (vvi)  LOC100283836 (zma)  LOC100285628 (zma)  LOC100775883 (gma)  LOC100779321 (gma)  LOC100792397 (gma)  LOC100804294 (gma)  LOC100816913 (gma)  LOC101259473 (sly)  LOC103628634 (zma)  LOC103849767 (bra)  LOC103863157 (bra)  LOC103870289 (bra)  LOC103871046 (bra)  LOC107275752 (osa) 
Subcellular
localization
wolf
nucl 9  (predict for NP_187966.1)
Subcellular
localization
TargetP
chlo 7,  mito 4  (predict for NP_187966.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
Genes directly connected with SCL30A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.0 SC35 serine/arginine-rich splicing factor-like protein, putative [detail] 836541
8.9 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
7.5 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835279
7.4 AT4G28990 RNA-binding protein-like protein [detail] 829020
6.6 RBP47C RNA-binding protein 47C [detail] 841157
5.6 UBP1B oligouridylate binding protein 1B [detail] 838309
Coexpressed
gene list		 [Coexpressed gene list for SCL30A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256649_at
256649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256649_at
256649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256649_at
256649_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820559      
Refseq ID (protein) NP_187966.1 


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