[←][→] ath   AT4G21100 Gene
functional annotation
Function   damaged DNA binding protein 1B  
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (54 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (188 genes)  IBA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IEA  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA RCA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (40 genes)  IBA ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03420 [list] [network] Nucleotide excision repair (69 genes)
ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
Protein NP_193842.1 
BLAST NP_193842.1 
Orthologous [Ortholog page] DDB1 (sly)  DDB1A (ath)  LOC4339794 (osa)  LOC7470811 (ppo)  LOC11435521 (mtr)  LOC100256664 (vvi)  LOC100279448 (zma)  LOC100777459 (gma)  LOC103635427 (zma)  LOC103834207 (bra)  LOC103839745 (bra) 
Subcellular
localization
wolf
nucl 2,  plas 2,  nucl_plas 2,  cyto 1,  vacu 1,  E.R. 1,  golg_plas 1,  E.R._vacu 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_193842.1)
Subcellular
localization
TargetP
other 4  (predict for NP_193842.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03013 RNA transport 2
Genes directly connected with DDB1B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 AT5G64420 DNA polymerase V family [detail] 836563
7.9 AT4G10320 tRNA synthetase class I (I, L, M and V) family protein [detail] 826624
7.3 AT4G19610 nucleotide/nucleic acid binding protein [detail] 827703
Coexpressed
gene list		 [Coexpressed gene list for DDB1B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254452_at
254452_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254452_at
254452_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254452_at
254452_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827857      
Refseq ID (protein) NP_193842.1 


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