[←][→] ath   AT4G13930 Gene
functional annotation
Function   serine hydroxymethyltransferase 4  
GO BP
GO:0006565 [list] [network] L-serine catabolic process  (7 genes)  IBA  
GO:0019264 [list] [network] glycine biosynthetic process from serine  (7 genes)  IBA  
GO:1904482 [list] [network] cellular response to tetrahydrofolate  (7 genes)  IBA  
GO:0046655 [list] [network] folic acid metabolic process  (13 genes)  IBA  
GO:0035999 [list] [network] tetrahydrofolate interconversion  (14 genes)  IEA  
GO:0006544 [list] [network] glycine metabolic process  (17 genes)  IBA  
GO:0006730 [list] [network] one-carbon metabolic process  (29 genes)  IBA  
GO:0046653 [list] [network] tetrahydrofolate metabolic process  (29 genes)  IBA  
GO:0007623 [list] [network] circadian rhythm  (111 genes)  IEP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO CC
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA ISS  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (7 genes)  IBA  
GO:0070905 [list] [network] serine binding  (7 genes)  IBA  
GO:0016597 [list] [network] amino acid binding  (26 genes)  IBA  
GO:0050897 [list] [network] cobalt ion binding  (51 genes)  IBA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IBA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (69 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (20 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_193129.1 
BLAST NP_193129.1 
Orthologous [Ortholog page] EDA36 (ath)  LOC4350456 (osa)  LOC4352058 (osa)  LOC11415840 (mtr)  LOC11442479 (mtr)  LOC100192461 (zma)  LOC100248779 (vvi)  SHMT (gma)  LOC100815417 (gma)  LOC101256090 (sly)  LOC101259725 (sly)  LOC103833148 (bra)  LOC103863581 (bra) 
Subcellular
localization
wolf
chlo 4,  cyto 3,  nucl 1,  cysk 1,  cysk_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_193129.1)
Subcellular
localization
TargetP
other 9  (predict for NP_193129.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 10
ath00270 Cysteine and methionine metabolism 7
ath01200 Carbon metabolism 4
ath00670 One carbon pool by folate 3
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
Genes directly connected with SHM4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
14.8 MAT3 methionine adenosyltransferase 3 [detail] 818260
11.0 ATMS1 Cobalamin-independent synthase family protein [detail] 831660
9.7 SAHH2 S-adenosyl-l-homocysteine (SAH) hydrolase 2 [detail] 821964
9.0 HOG1 S-adenosyl-L-homocysteine hydrolase [detail] 827028
7.7 MTHFR1 methylenetetrahydrofolate reductase 1 [detail] 825167
Coexpressed
gene list		 [Coexpressed gene list for SHM4]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 827027      
Refseq ID (protein) NP_193129.1 


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