[←][→] ath   AT4G16250 Gene
functional annotation
Function   phytochrome D  
GO BP
GO:0009584 [list] [network] detection of visible light  (5 genes)  IEA  
GO:0017006 [list] [network] protein-tetrapyrrole linkage  (7 genes)  IEA  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0009585 [list] [network] red, far-red light phototransduction  (54 genes)  IEA  
GO:0010017 [list] [network] red or far-red light signaling pathway  (76 genes)  IGI  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IEA  
GO CC
GO:0005886 [list] [network] plasma membrane  (3771 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO MF
GO:0009883 [list] [network] red or far-red light photoreceptor activity  (3 genes)  IGI  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (16 genes)  IEA  
GO:0009881 [list] [network] photoreceptor activity  (16 genes)  IEA  
GO:0042803 [list] [network] protein homodimerization activity  (158 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_193360.1 
BLAST NP_193360.1 
Orthologous [Ortholog page] PHYB (ath)  PHYE (ath)  LOC4332623 (osa)  LOC7485825 (ppo)  LOC7485902 (ppo)  LOC11417317 (mtr)  LOC11420025 (mtr)  LOC100261882 (vvi)  PHYE (vvi)  LOC100381811 (zma)  LOC100383702 (zma)  PHYB (gma)  PHYE2 (gma)  PHYE1 (gma)  PHYE (sly)  PHYB1 (sly)  PHYB2 (sly)  LOC103856075 (bra)  LOC103869720 (bra) 
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  mito 1,  cysk 1,  nucl_plas 1  (predict for NP_193360.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for NP_193360.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with PHYD on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.1 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family protein [detail] 821872
4.0 FRS7 FAR1-related sequence 7 [detail] 819799
3.9 AT5G58410 HEAT/U-box domain-containing protein [detail] 835954
Coexpressed
gene list		 [Coexpressed gene list for PHYD]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245487_at
245487_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245487_at
245487_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245487_at
245487_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827319      
Refseq ID (protein) NP_193360.1 


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