[←][→] ath   AT4G36690 Gene
functional annotation
Function   U2 snRNP auxilliary factor, large subunit, splicing factor  
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  ISS  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA IPI ISM  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001190937.1  NP_195387.1  NP_849509.1  NP_974695.1 
BLAST NP_001190937.1  NP_195387.1  NP_849509.1  NP_974695.1 
Orthologous [Ortholog page] AT1G60900 (ath)  LOC4350981 (osa)  LOC4351124 (osa)  LOC7473154 (ppo)  LOC11405354 (mtr)  LOC11429844 (mtr)  LOC100192903 (zma)  LOC100241076 (vvi)  LOC100272843 (zma)  LOC100286059 (zma)  LOC100779915 (gma)  LOC100793801 (gma)  LOC101251944 (sly)  LOC101263485 (sly)  LOC101266099 (sly)  LOC103830142 (bra)  LOC103834995 (bra)  LOC103838474 (bra)  LOC103854638 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001190937.1)
nucl 10  (predict for NP_195387.1)
nucl 8,  vacu 1  (predict for NP_849509.1)
nucl 9  (predict for NP_974695.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190937.1)
other 9  (predict for NP_195387.1)
other 9  (predict for NP_849509.1)
other 9  (predict for NP_974695.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
Genes directly connected with ATU2AF65A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.4 UBA2A UBP1-associated protein 2A [detail] 824853
12.1 U1-70K U1 small nuclear ribonucleoprotein-70K [detail] 824230
11.1 AT1G20920 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 838685
11.0 AT5G09880 Splicing factor, CC1-like protein [detail] 830848
9.8 SR34b RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 828027
9.3 AT1G60900 U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 842382
9.3 AT2G39580 zinc finger C3H1 domain protein [detail] 818543
9.2 AT5G17440 LUC7 related protein [detail] 831610
8.5 SR34 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 839262
8.0 AT2G16940 Splicing factor, CC1-like protein [detail] 816197
7.1 RS31 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 825359
6.9 AT2G48100 Exonuclease family protein [detail] 819422
5.6 AT5G24620 Pathogenesis-related thaumatin superfamily protein [detail] 832533
Coexpressed
gene list		 [Coexpressed gene list for ATU2AF65A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246257_at
246257_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246257_at
246257_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246257_at
246257_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829822      
Refseq ID (protein) NP_001190937.1 
NP_195387.1 
NP_849509.1 
NP_974695.1 


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