[←][→] ath   AT5G48140 Gene
functional annotation
Function   Pectin lyase-like superfamily protein  
GO BP
GO:0071555 [list] [network] cell wall organization  (538 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (995 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  IEA ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (52 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  IEA  
KEGG
Protein NP_199625.1 
BLAST NP_199625.1 
Orthologous [Ortholog page] LOC542387 (zma)  LOC732772 (zma)  AT2G15450 (ath)  AT2G15460 (ath)  AT2G15470 (ath)  AT2G26620 (ath)  AT2G33160 (ath)  AT2G40310 (ath)  AT3G07820 (ath)  AT3G07830 (ath)  AT3G07840 (ath)  AT3G07850 (ath)  AT3G14040 (ath)  AT4G13760 (ath)  AT4G18180 (ath)  AT1G17150 (ath)  AT1G43080 (ath)  AT1G43090 (ath)  AT1G43100 (ath)  AT1G78400 (ath)  LOC4323970 (osa)  LOC4328617 (osa)  LOC4341242 (osa)  LOC4341243 (osa)  LOC4341514 (osa)  LOC4341515 (osa)  LOC4345285 (osa)  LOC7468605 (ppo)  LOC7477987 (ppo)  LOC7481681 (ppo)  LOC7491350 (ppo)  LOC11415149 (mtr)  LOC11422898 (mtr)  LOC11427911 (mtr)  LOC11434881 (mtr)  LOC25490499 (mtr)  LOC25500883 (mtr)  LOC100191230 (zma)  LOC100242022 (vvi)  LOC100242658 (vvi)  LOC100243609 (vvi)  LOC100247162 (vvi)  LOC100247792 (vvi)  LOC100251285 (vvi)  LOC100254136 (vvi)  LOC100259750 (vvi)  LOC100264306 (vvi)  LOC100264944 (vvi)  LOC100267512 (vvi)  LOC100273711 (zma)  LOC100273946 (zma)  LOC100285881 (zma)  LOC100779447 (gma)  LOC100779556 (gma)  LOC100780097 (gma)  LOC100780628 (gma)  LOC100784156 (gma)  LOC100788863 (gma)  LOC100795460 (gma)  LOC100810484 (gma)  LOC100812594 (gma)  LOC100819348 (gma)  LOC101244096 (sly)  LOC101245486 (sly)  LOC101248339 (sly)  LOC101248624 (sly)  LOC101249384 (sly)  LOC101249539 (sly)  LOC101268588 (sly)  LOC103626843 (zma)  LOC103626848 (zma)  LOC103629730 (zma)  LOC103629733 (zma)  LOC103629734 (zma)  LOC103629735 (zma)  LOC103629743 (zma)  LOC103631311 (zma)  LOC103639332 (zma)  LOC103653359 (zma)  LOC103828990 (bra)  LOC103831485 (bra)  LOC103832320 (bra)  LOC103849010 (bra)  LOC103849020 (bra)  LOC103849039 (bra)  LOC103854518 (bra)  LOC103857474 (bra)  LOC103857926 (bra)  LOC103858095 (bra)  LOC103858475 (bra)  LOC103859243 (bra)  LOC103859244 (bra)  LOC103859245 (bra)  LOC103860974 (bra)  LOC103863172 (bra)  LOC103865247 (bra)  LOC103865787 (bra)  MF16 (bra)  LOC103872502 (bra)  LOC103874929 (bra)  LOC109121790 (vvi)  LOC109123473 (vvi) 
Subcellular
localization
wolf
extr 7,  cyto 1,  chlo 1,  nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_199625.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_199625.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
Genes directly connected with AT5G48140 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
16.7 AT3G01240 splicing regulatory glutamine/lysine-rich-like protein [detail] 821219
16.6 AT3G07820 Pectin lyase-like superfamily protein [detail] 819973
16.2 AT3G43120 SAUR-like auxin-responsive protein family [detail] 823371
10.6 AT4G03290 EF hand calcium-binding protein family [detail] 827993
9.5 AT2G02720 Pectate lyase family protein [detail] 814801
9.2 AT1G01980 FAD-binding Berberine family protein [detail] 839296
7.8 AT3G62640 DUF3511 domain protein (DUF3511) [detail] 825438
5.6 CSLD1 cellulose synthase-like D1 [detail] 817872
Coexpressed
gene list		 [Coexpressed gene list for AT5G48140]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248714_at
248714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248714_at
248714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248714_at
248714_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834866      
Refseq ID (protein) NP_199625.1 


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