cis; CGCGTCA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGCGTCA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGCGTCA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.73At3g49530no apical meristem (NAM) family protein NAC
0.73At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.72At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.71At5g59820zinc finger (C2H2 type) family protein (ZAT12) ((RHL41)) C2H2
0.70At5g24590turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) ((TIP)) NAC
0.70At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.70At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.70At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.68At3g23250myb family transcription factor (MYB15) MYB
0.68At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.67At3g52800zinc finger (AN1-like) family protein C2H2
0.67At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.67At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.67At5g67300myb family transcription factor MYB
0.66At2g38470WRKY family transcription factor ((WRKY33)) WRKY

link to other 304 cis elements in ATTED

similar seq.
←CGCGTCA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGACGCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGCGTCA1.000.07193
ACGCGTC0.950.0790
ACGCGTA0.890.1074
ACGCGTT0.890.1096
ACGCGGT0.880.09141
AACGCGT0.870.10127
CCGCGTT0.870.1017
CGCGTAA0.870.07199
GACGCGT0.860.0622
CGCGTTT0.850.1193